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Author SHA1 Message Date
Ludovic Courtès
e42f026eb5
ui: Present 'use-modules' hints with a question mark. 
Suggested by myglc2 <myglc2@gmail.com>.

* guix/ui.scm (report-load-error): Write "Did you forget" rather than
"Try adding."
 2017-11-30 18:14:56 +01:00
Ricardo Wurmus
117d8cc40e
gnu: jellyfish: Update to 2.2.7. 
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
 2017-11-30 17:38:36 +01:00
Ricardo Wurmus
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus
b50a4b1391
gnu: r-cowplot: Update to 0.9.1. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4. 
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus
0382d37734
gnu: r-rmarkdown: Update to 1.8. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus
e35cac9581
gnu: r-batchjobs: Update to 1.7. 
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
 2017-11-30 17:28:25 +01:00
Ricardo Wurmus
05fd8e6b46
gnu: r-pracma: Update to 2.1.1. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
 2017-11-30 17:28:24 +01:00
Ricardo Wurmus
9b8d02011f
gnu: r-annotationhub: Update to 2.10.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
 2017-11-30 17:28:24 +01:00
Ricardo Wurmus
87e91a9fff
gnu: r-msnid: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
 2017-11-30 17:28:23 +01:00
Ricardo Wurmus
439492654b
gnu: r-maldiquant: Update to 1.17. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
 2017-11-30 17:28:23 +01:00
Ricardo Wurmus
06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
 2017-11-30 17:28:22 +01:00
Ricardo Wurmus
1ce5d32b49
gnu: r-limma: Update to 3.34.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
 2017-11-30 17:28:22 +01:00
Ricardo Wurmus
8131cf4162
gnu: r-variantannotation: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
 2017-11-30 17:28:21 +01:00
Ricardo Wurmus
d2081a17ed
gnu: r-getopt: Update to 1.20.1. 
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
 2017-11-30 17:28:20 +01:00
Ricardo Wurmus
4220ab0c81
gnu: r-gseabase: Update to 1.40.1. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
 2017-11-30 17:28:20 +01:00
Ricardo Wurmus
d259932ca8
gnu: r-dexseq: Update to 1.24.1. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
 2017-11-30 17:28:19 +01:00
Ricardo Wurmus
058644c0f2
gnu: r-deseq2: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
 2017-11-30 17:28:18 +01:00
Ricardo Wurmus
654c29aceb
gnu: r-annotate: Update to 1.56.1. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
 2017-11-30 17:28:18 +01:00
Ricardo Wurmus
814fd32670
gnu: r-circlize: Update to 0.4.2. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
 2017-11-30 17:28:17 +01:00
Ricardo Wurmus
d76f987c42
gnu: r-rcpp: Update to 0.12.14. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
 2017-11-30 17:28:17 +01:00
Ricardo Wurmus
26007cd5ee
gnu: r-timedate: Update to 3042.101. 
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
 2017-11-30 17:28:16 +01:00
Ricardo Wurmus
87313f64d9
gnu: r-stringi: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
 2017-11-30 17:28:16 +01:00
Ricardo Wurmus
3e11bddcc7
gnu: r-devtools: Update to 1.13.4. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus
20b0f8a5ec
gnu: r-mclust: Update to 5.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus
6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus
a0a3184925
gnu: r-car: Update to 2.1-6. 
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus
c8fb593502
gnu: r-sn: Update to 1.5-1. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus
b796f9e6be
gnu: r-openssl: Update to 0.9.9. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus
09c0107f75
gnu: r-hms: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
 2017-11-30 17:28:12 +01:00
Ricardo Wurmus
6c84c735a5
gnu: r-dendextend: Update to 1.6.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
 2017-11-30 17:28:12 +01:00
Ricardo Wurmus
18a11c6d62
gnu: r-recipes: Update to 0.1.1. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
 2017-11-30 17:28:11 +01:00
Ricardo Wurmus
6c8c8c6b75
gnu: Add r-broom. 
* gnu/packages/cran.scm (r-broom): New variable.
 2017-11-30 17:28:10 +01:00
Ricardo Wurmus
cdc129dc53
gnu: Add r-psych. 
* gnu/packages/cran.scm (r-psych): New variable.
 2017-11-30 17:28:10 +01:00
Arun Isaac
6e385b76e6
gnu: mongodb: Use scons-build-system. 
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
 2017-11-30 18:21:23 +05:30
Arun Isaac
bc27eb3b56
gnu: klick: Use scons-build-system. 
* gnu/packages/music.scm (klick): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac
3f3f8f494e
gnu: pingus: Use scons-build-system. 
* gnu/packages/games.scm (pingus): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac
92b51d127f
gnu: godot: Use scons-build-system. 
* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac
9364a520ce
gnu: metabat: Use scons-build-system. 
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac
82cc8253de
gnu: serf: Use scons-build-system. 
* gnu/packages/web.scm (serf): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac
2235abb2a2
gnu: gpick: Use scons-build-system. 
* gnu/packages/image.scm (gpick): Switch to scons-build-system.
 2017-11-30 18:19:31 +05:30
Arun Isaac
2b1a5ed854
gnu: linuxdcpp: Use scons-build-system. 
* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
 2017-11-30 18:19:31 +05:30
Arun Isaac
3d0aa7f70b
build-system: Add scons-build-system. 
* guix/build-system/scons.scm: New file.
* guix/build/scons-build-system.scm: New file.
* Makefile.am (MODULES): Register them.
* doc/guix.texi (Build Systems): Add scons-build-system.
 2017-11-30 18:19:31 +05:30
Arun Isaac
bf630276a1
gnu: scons: Update to 3.0.1. 
* gnu/packages/python.scm (scons): Update to 3.0.1.
(scons-python2): New variable.
 2017-11-30 18:18:47 +05:30
Mathieu Othacehe
c5b2905d92
gnu: dtc: Fix build on 32 bits platforms. 
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and
  dtc-format-modifier.patch to fix build and tests on 32 bits platforms.
* gnu/packages/patches/dtc-32-bits-check.patch : New file.
* gnu/packages/patches/dtc-format-modifier.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add two above patches.
 2017-11-30 13:32:28 +01:00
Roel Janssen
8937abefb2
gnu: Update r-matrix to 1.2-12. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
 2017-11-30 12:52:25 +01:00
Roel Janssen
c71558ffed
gnu: Update r-cluster to 2.0.6. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
 2017-11-30 12:51:54 +01:00
Roel Janssen
cbe1314a7e
gnu: Update r-minimal to 3.4.3. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
 2017-11-30 12:50:23 +01:00
Ludovic Courtès
8833a647bb
gnu: guix: Move 'bootstrap' phase after 'unpack'. 
Suggested by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00389.html>.

* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase back after 'unpack'.
 2017-11-30 11:14:34 +01:00
Ludovic Courtès
d65d7759f0
doc: Give the absolute file name of 'hydra.gnu.org.pub' in snippets. 
* doc/guix.texi (Substitute Server Authorization): Give the absolute
file name of 'hydra.gnu.org.pub' in the snippet.
 2017-11-30 10:34:04 +01:00