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Author SHA1 Message Date
Maxim Cournoyer e2c58b9150
gnu: Add python-pytest-repeat. 
* gnu/packages/python-check.scm (python-pytest-repeat): New variable.
 2021-09-30 10:27:55 -04:00
Efraim Flashner 7b59508ca7
gnu: Add julia-documenter. 
These four variables are added in the same commit to avoid a cyclic
dependency.

* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-bootstrap): New hidden variable.
 2021-09-30 14:25:48 +03:00
Efraim Flashner 647edfd0d3
gnu: Add julia-sass. 
* gnu/packages/julia-xyz.scm (julia-sass): New variable.
 2021-09-30 14:20:15 +03:00
Efraim Flashner ac1166fbdb
gnu: Add julia-libsass-jll. 
* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
 2021-09-30 14:20:15 +03:00
Efraim Flashner 60d3484f7c
gnu: Add julia-ansicoloredprinters. 
* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
 2021-09-30 14:20:14 +03:00
Efraim Flashner 3893f13669
gnu: Add julia-pycall. 
* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
 2021-09-30 14:20:14 +03:00
Efraim Flashner 25bb6f0822
gnu: Add julia-mlstyle. 
* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
 2021-09-30 14:20:14 +03:00
Efraim Flashner 55e1fa89f1
gnu: Add julia-measurements. 
* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
 2021-09-30 14:20:14 +03:00
Efraim Flashner 8733d2c235
gnu: Add julia-quadgk. 
* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
 2021-09-30 14:20:14 +03:00
Ricardo Wurmus b28cd884b8
gnu: r-gdsfmt: Adjust bad substitution. 
* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line
anchor in substitution regular expression.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus 0398a89fa1
gnu: r-delayedmatrixstats: Update to 1.14.3. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus 425c53b568
gnu: r-s4vectors: Update to 0.30.1. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
 2021-09-30 12:39:49 +02:00
Ricardo Wurmus 3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 74e2186731
gnu: r-gdsfmt: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 494b7c4eca
gnu: r-cicero: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 3278daa726
gnu: r-zinbwave: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus a88e7abf2f
gnu: r-clusterprofiler: Update to 4.0.5. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 1359fc7fbd
gnu: r-ggtree: Update to 3.0.4. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 538618552b
gnu: r-matrixgenerics: Update to 1.4.3. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus ce23a074f0
gnu: r-chippeakanno: Update to 3.26.4. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
 2021-09-30 12:39:48 +02:00
Ricardo Wurmus 4fb187b79e
gnu: r-diffbind: Update to 3.2.7. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 43ac163bdf
gnu: r-genomicfeatures: Update to 1.44.2. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 7c6046a6db
gnu: r-genomeinfodb: Update to 1.28.4. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 0ac7b8b6ad
gnu: r-edger: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 77a5fdd51c
gnu: r-biocparallel: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus e8aab58d0c
gnu: r-affxparser: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 74717852d4
gnu: r-r-filesets: Fix build by setting HOME. 
* gnu/packages/cran.scm (r-r-filesets)[arguments]: Add build phase to set HOME
variable.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 655a23fa8b
gnu: r-glinternet: Update to 1.0.12. 
* gnu/packages/statistics.scm (r-glinternet): Update to 1.0.12.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus 1322fe25a6
gnu: r-pbapply: Update to 1.5-0. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.5-0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus 8170baded5
gnu: r-rrcov: Update to 1.6-0. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.6-0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus 849d0f0f63
gnu: r-fastica: Update to 1.2-3. 
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-3.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus f5cfcd0110
gnu: r-sfsmisc: Update to 1.1-12. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-12.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus 745e373982
gnu: r-matrixstats: Update to 0.61.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.61.0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus a94068188c
gnu: r-r-utils: Update to 2.11.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.11.0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus 295b984fbc
gnu: r-e1071: Update to 1.7-9. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-9.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus 031c6f65a2
gnu: r-rngtools: Update to 1.5.2. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.5.2.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus 0ac0dfdf7b
gnu: r-xml: Update to 3.99-0.8. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.8.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus d866a9c829
gnu: r-rmarkdown: Update to 2.11. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.11.
[propagated-inputs]: Add r-jquerylib.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 087ccfcab2
gnu: r-plotrix: Update to 3.8-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-2.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 3a803eacce
gnu: r-hms: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-hms): Update to 1.1.1.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 5317e53ae6
gnu: r-openssl: Update to 1.4.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.5.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 7eef4503e9
gnu: r-roxygen2: Update to 7.1.2. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus b64c0e98f6
gnu: r-ade4: Update to 1.7-18. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-18.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 60d7bdf53d
gnu: r-tibble: Update to 3.1.4. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.4.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 3f631e9a6f
gnu: r-knitr: Update to 1.34. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.34.
[propagated-inputs]: Remove r-markdown.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 7465095951
gnu: r-stringi: Update to 1.7.4. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.4.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 81781becae
gnu: r-digest: Update to 0.6.28. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.28.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus b70124ee3f
gnu: r-survival: Update to 3.2-13. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-13.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus 924dc71e57
gnu: r-mgcv: Update to 1.8-37. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-37.
 2021-09-30 12:39:44 +02:00