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Author SHA1 Message Date
Nicolas Goaziou e0e9aa116e
gnu: emacs-geiser: Update to 0.19. 
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.19.
 2021-12-05 21:22:43 +01:00
jgart a3dea002c1
gnu: Add hex. 
* gnu/packages/rust-apps.scm (hex): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 19:46:10 +01:00
jgart 13f2f2d14d
gnu: Add rust-no-color-0.1. 
* gnu/packages/crates-io.scm (rust-no-color-0.1): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 19:44:26 +01:00
simendsjo c4699914c9
gnu: font-iosevka: Update to 11.2.0. 
* gnu/packages/fonts.scm (font-iosevka): Update to 11.2.0

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 19:40:09 +01:00
Aleksandr Vityazev df4debda05
gnu: sbcl-slynk: Update to 1.0.43-5.0470c02 
* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 1.0.43-5.0470c02.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 19:37:59 +01:00
Aleksandr Vityazev 23e1f3e4f6
gnu: emacs-sly: Update to 1.0.43-5.0470c02 
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 1.0.43-5.0470c02.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 19:37:58 +01:00
Nicolas Goaziou b4e97063ba
gnu: trezor-agent: Fix hash. 
* gnu/packages/finance.scm (trezor-agent): Update hash.

Hash was not updated when committing
c7c4f80881.
 2021-12-05 19:17:01 +01:00
Marius Bakke 10554e0a57
gnu: python-django-netfields: Update to 1.2.4. 
* gnu/packages/django.scm (python-django-netfields): Update to 1.2.4.
 2021-12-05 14:40:08 +01:00
Marius Bakke 50fff94b5a
gnu: python-django: Update to 3.2.9. 
* gnu/packages/django.scm (python-django): Update to 3.2.9.
 2021-12-05 14:40:08 +01:00
Marius Bakke f63fb61d0c
import: PyPI: Validate GPG signatures when applicable. 
* guix/import/pypi.scm (<distribution>): Fix funny typo.
(latest-release): When the distribution has a cryptographic signature, pass it
along to UPSTREAM-SOURCE.
 2021-12-05 14:40:08 +01:00
Marius Bakke e166e6acf6
gnu: drbd-utils: Update to 9.19.1. 
* gnu/packages/cluster.scm (drbd-utils): Update to 9.19.1.
 2021-12-05 14:40:07 +01:00
Nicolas Goaziou 21e2be5968
gnu: emacs-peg: Update to 0.10.3. 
* gnu/packages/emacs-xyz.scm (emacs-peg): Update to 0.10.3.
 2021-12-05 14:20:16 +01:00
Sharlatan Hellseher bf9a1dfd59
gnu: Add imppg 
* gnu/packages/astronomy.scm: (imppg): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 12:35:55 +01:00
dissent c663d037aa
gnu: Add pqiv. 
* gnu/packages/image-viewers.scm (pqiv): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 12:27:02 +01:00
jgart 66a2d3830c
gnu: Add pudb. 
* gnu/packages/python-xyz.scm (pudb): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 12:18:24 +01:00
Nicolas Goaziou 53afb3cf2a
gnu: leo: Use GIT-VERSION. 
* gnu/packages/web-browsers.scm (leo)[source]: Use `git-version' instead of
crafting version string.  Also fix indentation.
 2021-12-05 12:08:16 +01:00
jgart 2149515808
gnu: Add leo. 
* gnu/packages/web-browsers.scm (leo): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-05 11:03:14 +01:00
Efraim Flashner e70e26423b
gnu: minimap2: Update to 2.23. 
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.23.
 2021-12-05 11:51:10 +02:00
Artyom V. Poptsov 030d9b261f
gnu: Add guile-ini. 
* gnu/packages/guile-xyz.scm (guile-ini): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-12-05 09:53:59 +01:00
Ryan Desfosses 20d525a842
gnu: Add libphonenumber 
* gnu/package/messaging.scm (libphonenumber): New variable

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-04 23:03:54 +01:00
Artyom V. Poptsov ac872546fc
gnu: Add guile-smc 
* gnu/packages/guile-xyz.scm (guile-smc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-12-04 22:45:27 +01:00
Ludovic Courtès f044ffc1c4
gnu: ocaml4.07-ppx-let: Make 'properties' an alist. 
The incorrect 'properties' value was introduced in
3649c56a5f.

* gnu/packages/ocaml.scm (ocaml4.07-ppx-let)[properties]: Turn into an
alist.
 2021-12-04 21:57:27 +01:00
Julien Lepiller 7fcb20a8fa
nls: Update translations. 2021-12-04 19:40:52 +01:00
Nicolas Goaziou f199427c1b
gnu: emacs-org-roam-bibtex: Update to 0.6.1. 
* gnu/packages/emacs-xyz.scm (emacs-org-roam-bibtex): Update to 0.6.1.
 2021-12-04 16:17:58 +01:00
Jonathan Brielmaier 1e5656e7bd
news: Add copyright line for myself. 
* etc/news.scm: Add myself to the copyright headers.
 2021-12-04 15:10:29 +01:00
jgart da70132ee9
gnu: janet: Update to 1.19.0. 
* gnu/packages/lisp.scm (janet): Update to 1.19.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-04 13:51:49 +01:00
cage 612fe425b4
gnu: tinmop: Update to 0.9.2. 
* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.2.
  [inputs]: Move nano, openssl and xdg-utils to...
  [native-inputs]: ... here. Add automake, autoconf and mandoc. Remove curl
  and gnupg.
  [arguments]: Add 'fix-configure.ac' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-04 13:44:17 +01:00
Ricardo Wurmus 18a85213ae
gnu: pigx-sars-cov2-ww: Update to 0.0.4. 
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.4.
[inputs]: Add bbmap, bedtools, fastp, ivar, and r-r-utils.
 2021-12-04 12:42:51 +01:00
Ricardo Wurmus ce9bfcddb5
gnu: imp: Update to 2.15.0. 
* gnu/packages/bioinformatics.scm (imp): Update to 2.15.0.
[arguments]: Disable one more test.
 2021-12-03 22:29:52 +01:00
Ricardo Wurmus dcf857e486
gnu: Add r-fpeek. 
* gnu/packages/cran.scm (r-fpeek): New variable.
 2021-12-03 22:29:40 +01:00
Liliana Marie Prikler 15404ff19b
gnu: emacs: Load package descriptors from packages referenced by subdirs.el 
* gnu/packages/aux-files/emacs/guix-emacs.el
(guix-emacs--non-core-load-path): New procedure.
(guix-emacs-autoload-packages): Use it here.
(guix-emacs-load-package-descriptors): New procedure.
* gnu/packages/emacs.scm (emacs)[install-site-start]: Install advice to run
‘guix-emacs-load-package-descriptors’.
 2021-12-03 21:39:50 +01:00
Liliana Marie Prikler 98cec36957
build-system: emacs: Keep -pkg.el files. 
Partly fixes <https://bugs.gnu.org/48331> -- package descriptions can now be
found in the install directory.

* guix/build/emacs-build-system.scm (%default-exclude): Remove "-pkg\\.el$".
 2021-12-03 21:39:50 +01:00
Liliana Marie Prikler 4baeb72717
gnu: emacs: Make DocView PDF work out of the box. 
* gnu/packages/emacs.scm (emacs)[patch-program-file-names]: Add patches for
the programs “gs”, “dvipdf”, “ps2pdf” and “pdftotext”.
[inputs]: Add ghostscript and poppler.
 2021-12-03 21:39:49 +01:00
Liliana Marie Prikler f725279cdd
gnu: emacs: Find real GVFS processes. 
* gnu/packages/emacs.scm (emacs)[#:phases]<patch-program-file-names>: Expand
calls to “tramp-compat-process-running-p” so that Guix wrappers are also
matched.
 2021-12-03 21:39:49 +01:00
phodina 269baba919
gnu: Add valeronoi. 
* gnu/packages/engineering.scm (valeronoi): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-03 21:38:30 +01:00
jgart 19528e39bb
gnu: st: Install terminfo files. 
* gnu/packages/suckless.scm (st)[native-inputs]: Add ncurses.
[make-flags](TERMINFO): New flag.
[phases](inhibit-terminfo-install): Remove phase.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2021-12-03 15:27:41 -05:00
Morgan Smith 170cb4c881
gnu: emacs-org: Preserve version information. 
* gnu/packages/emacs-xyz.scm (emacs-org)[#:phases]: Prevent install phase from
deleting the version information.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-12-03 21:14:25 +01:00
Nicolas Goaziou 85ed37c170
gnu: emacs-consult-notmuch: Update to 0.6. 
* gnu/packages/emacs-xyz.scm (emacs-consult-notmuch): Update to 0.6.
 2021-12-03 19:43:12 +01:00
Nicolas Goaziou 6557f17000
gnu: emacs-helm: Update to 3.8.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.8.2.
 2021-12-03 19:41:27 +01:00
Nicolas Goaziou a7776d5ac0
gnu: emacs-vertico: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.17.
 2021-12-03 19:36:35 +01:00
Ricardo Wurmus b8d6e77476
gnu: python-ont-fast5-api: Update to 4.0.0. 
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): Update to 4.0.0.
[source]: Remove bundled plugin binaries.
[arguments]: Install plugin from inputs.
[inputs]: Add vbz-compression.
[propagated-inputs]: Remove python-six; add python-packaging.
 2021-12-03 14:55:38 +01:00
Ricardo Wurmus d0aa14a43d
gnu: Add vbz-compression. 
* gnu/packages/bioinformatics.scm (vbz-compression): New variable.
 2021-12-03 14:55:38 +01:00
Mathieu Othacehe 3354e41c1e
system: vm: Remove the vga argument. 
* gnu/system/vm.scm (common-qemu-options): Remove the "-vga std" argument that
is the default since QEMU 2.2.

Suggested-by: Attila Lendvai <attila@lendvai.name>
 2021-12-03 14:25:57 +01:00
Attila Lendvai b42bfbdfe5
guix system vm: Add --no-graphic CLI argument. 
It configures QEMU to use the tty it was started in for IO (as opposed to
opening a separate graphical window).  This enables copy-pasting and
scrollback.  Exit QEMU with C-a x.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): Also add the
'-nographic' QEMU argument when called with #:graphic? #false.
* guix/scripts/system.scm (system-derivation-for-action): Propagate
the #:graphic? keyword arg.
(perform-action): Add and propagate the #:graphic? keyword arg.
(show-help): Add --no-graphic CLI arg.
(%options): Process the new --no-graphic CLI arg.
(process-action): Feed in the CLI arg through the #:graphic? keyword arg.
* doc/guix.texi (Invoking guix system): Add example to combine guix system and
invoking the vm start script into one command.  Split the description of the
various options into separate paragraphs.  Add a paragraph to describe
--no-graphic.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-12-03 14:18:32 +01:00
Charles 5a18cf3604
gnu: cl-coalton: Update to 0.0.1-2.012f6c8. 
* gnu/packages/lisp-xyz.scm (sbcl-coalton): Update to 0.0.1-2.012f6c8.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-03 14:08:14 +01:00
Charles 6e0c4a28b9
gnu: cl-float-features: Update to 1.0.0-2.c1f86ae. 
* gnu/packages/lisp-xyz.scm (sbcl-float-features): Update to 1.0.0-2.c1f86ae.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-12-03 13:59:46 +01:00
Ricardo Wurmus b7aaf6c418
gnu: ivar: Disable parallel tests. 
* gnu/packages/bioinformatics.scm (ivar)[arguments]: Disable parallel tests.
 2021-12-03 13:48:41 +01:00
Ricardo Wurmus aa2d5ca02e
gnu: Remove python2-biom-format. 
There are no users of this variant, and the current version of biom-format
does not support Python 2.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove variable.
(python-biom-format)[properties]: Remove field.
 2021-12-03 13:31:32 +01:00
Ricardo Wurmus 8fa7de386c
gnu: r-flowclust: Add gsl. 
* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally
committed comment character.
 2021-12-03 13:31:32 +01:00
Mark H Weaver 3e9dc2754e
gnu: icecat: Remove vestigial icecat-78-makeicecat.patch. 
This is a followup to commit a63231003e.

* gnu/packages/patches/icecat-78-makeicecat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-12-03 04:45:15 -05:00