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Author SHA1 Message Date
Maxim Cournoyer c9cfcd5159
gnu: mesa: Update to 20.1.8. 
* gnu/packages/gl.scm (mesa): Update to 20.1.8.
(mesa-20.0.8): Remove variable.
 2020-09-26 01:20:36 -04:00
Ludovic Courtès 0b40d1a3b4
gnu: gnutls: Remove dependency on the Autotools. 
This is a followup to 5cf6f6fe7b.

* gnu/packages/tls.scm (gnutls)[arguments]: In 'disable-failing-tests'
phase, change 'tests/fastopen.sh' instead of 'tests/Makefile.am'.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, GETTEXT-MINIMAL, and
LIBTOOL.
 2020-09-25 15:15:59 +02:00
Ludovic Courtès e7ab9c33cc
gnu: gnutls: Enable more testing. 
* gnu/packages/tls.scm (gnutls)[native-inputs]: Add NET-TOOLS, IPROUTE,
and SOCAT.
[arguments]: Adjust #:disallowed-references accordingly.
 2020-09-25 14:50:56 +02:00
Ludovic Courtès 0e54d63dfa
gnu: gnutls: Update to 3.6.15. 
* gnu/packages/tls.scm (gnutls): Update to 3.6.15.
[replacement]: Remove.
(gnutls-3.6.14): Remove.
* gnu/packages/vpn.scm (openconnect)[inputs]: Adjust accordingly.
* gnu/packages/package-management.scm (guix)[propagated-inputs]:
Likewise.
 2020-09-25 14:50:02 +02:00
Ludovic Courtès a83860cd22
gnu: ld-wrapper: Unset 'GUILE_SYSTEM_COMPILED_PATH'. 
'GUILE_SYSTEM_COMPILED_PATH' is set by guile-bootstrap@2.0.  Unsetting
it ensures it does not interfere.

* gnu/packages/ld-wrapper.in: Unset GUILE_SYSTEM_COMPILED_PATH.
 2020-09-25 14:50:02 +02:00
Maxim Cournoyer def6e2ae46
gnu: util-linux: Search for setuid helper programs as well. 
To allow using mount as an unprivileged user, the helper commands must also be
setuid.  Before this change, the 'mount' command would only look under
/run/current/profile/sbin.  Extend the default path to include
/run/setuid-programs as well.

Partially addresses <https://issues.guix.gnu.org/39670>.

* gnu/packages/linux.scm (util-linux)[configure-flags]: Prepend
"/run/setuid-programs:" to the default search path.

Reported-by: Nathan Dehnel <ncdehnel@gmail.com>
 2020-09-24 15:21:04 -04:00
Maxim Cournoyer 5cf6f6fe7b
gnu: gnutls: Fix build. 
Fixes <http://issues.guix.gnu.org/43561>.

* gnu/packages/tls.scm (gnutls)[phases]{disable-failing-tests}: Add phase.
[native-inputs]: Add autoconf, automake, gettext-minimal, libtool and texinfo.
 2020-09-23 22:41:06 -04:00
Efraim Flashner ddda703840
gnu: libgcrypt: Update to 1.8.6. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.6.
 2020-09-23 09:57:08 +03:00
Efraim Flashner 923bb70a1b
gnu: glibc-for-bootstrap: Fix patch. 
This is a follow-up to d08f5299e6.

* gnu/packages/patches/glibc-bootstrap-system.patch: Update.
 2020-09-23 08:13:10 +03:00
Paul Garlick 73b67eeea4
gnu: texlive-latex-psnfss: Ensure that font definition files are installed. 
* gnu/packages/tex.scm (texlive-latex-psnfss): Use
simple-texlive-package to install font definition files and
documentation.
 2020-09-22 17:22:27 +01:00
Efraim Flashner d08f5299e6
gnu: glibc-for-bootstrap: Refresh patch. 
This is a follow-up to d2a01e3b5b.

* gnu/packages/patches/glibc-bootstrap-system.patch: Update for glibc-2.32.
 2020-09-21 18:33:38 +03:00
Ludovic Courtès dd36f508d5
gnu: node: Update to 10.22.0. 
* gnu/packages/node.scm (node): Update to 10.22.0.
(node-10.22): Remove.  It was referring to 'nghttp2-1.41', which is
unbound.
 2020-09-20 23:56:30 +02:00
Ludovic Courtès 2a3fccf70f
gnu: binutils: Update to 2.35.1. 
* gnu/packages/base.scm (binutils): Update to 2.35.1.
[arguments]: Remove #:make-flags.
[properties]: Remove.
(binutils+documentation): Remove.
(binutils-gold): Inherit from BINUTILS.
* gnu/packages/make-bootstrap.scm (%binutils-static)[arguments]:
Remove #:make-flags.
 2020-09-20 23:56:30 +02:00
Ludovic Courtès 855bc05e11
gnu: glibc: Add version 2.31. 
* gnu/packages/base.scm (glibc-2.31): New variable.
* gnu/system/locale.scm (%default-locale-libcs): Add it.
 2020-09-20 23:56:17 +02:00
Ludovic Courtès 3b49071fd1
gnu: gawk-boot0: Inherit from gawk. 
Until now the version number would be wrong.

* gnu/packages/commencement.scm (gawk-boot0): Inherit from GAWK, not
PATCH.
 2020-09-20 13:07:55 +02:00
Ludovic Courtès 32e5ffaa78
gnu: gawk: Update to 5.1.0. 
* gnu/packages/gawk.scm (gawk): Update to 5.1.0.
 2020-09-20 12:44:29 +02:00
Ludovic Courtès d2a01e3b5b
gnu: glibc: Update to 2.32. 
* gnu/packages/base.scm (glibc): Update to 2.32.
[arguments]: Add #:make-flags.
 2020-09-20 01:01:27 +02:00
Ludovic Courtès 18fa433bf5
gnu: gcc-mesboot: Remove redundant input. 
Fixes <https://bugs.gnu.org/43508>.

* gnu/packages/commencement.scm (gcc-mesboot)[native-inputs]: Remove
GCC-MESBOOT1, which is already in %BOOT-MESBOOT4-INPUTS.
 2020-09-19 17:28:47 +02:00
Ludovic Courtès d845e3af7c
utils: Add 'call-with-temporary-output-file'. 
* guix/utils.scm: Re-export 'call-with-temporary-output-file'.
(call-with-temporary-output-file): Move to...
* guix/build/utils.scm (call-with-temporary-output-file): ... here.
 2020-09-19 17:28:47 +02:00
Ludovic Courtès a08cb3ca95
Remove (guix build rpath). 
This file was unused and is now superseded by (guix build gremlin).

* guix/build/rpath.scm: Remove.
* Makefile.am (MODULES): Remove it.
 2020-09-19 17:28:46 +02:00
Ludovic Courtès 49a1203d67
gremlin: Add 'set-file-runpath', 'file-runpath', and 'file-needed'. 
* guix/build/gremlin.scm (file-dynamic-info, file-runpath, file-needed):
New procedures.
(&missing-runpath-error, &runpath-too-long-error): New condition types.
(set-file-runpath): New procedure.
* tests/gremlin.scm ("set-file-runpath + file-runpath"): New test.
 2020-09-19 17:28:46 +02:00
Jakub Kądziołka e0f31baacc
build-system/gnu: strip with --strip-unneeded [v2] 
[Accidentally pushed patch v1, this commit contains the rest of the
changes. Revised commit message follows.]

Apart from debug information, one can also strip some symbols. This can
be a significant difference, the closure of gcc-toolchain@7 got reduced
by 15 MB in my tests.

As per [1], --strip-debug is included in --strip-unneeded, and
the debug files created also contain a copy of the information removed
by --strip-unneeded.

Linux From Scratch suggests that this option shouldn't be used on static
libraries [2], however other sources [3] indicate otherwise. Building a
toolchain with this patch succeeds, and the result works fine for
'gcc -static hello-world.c'.

[1]: https://stackoverflow.com/a/52555093
[2]: http://www.linuxfromscratch.org/lfs/view/9.1/chapter05/stripping.html
[3]: https://www.technovelty.org/linux/stripping-shared-libraries.html

* guix/build/gnu-build-system.scm (strip): Use --strip-unneeded.
* guix/build-system/gnu.scm (static-package, gnu-build, gnu-cross-build): Likewise.
 2020-09-19 15:43:03 +02:00
Jakub Kądziołka f32a6055a5
build-system/gnu: strip with --strip-unneeded 
Apart from debug information, one can also strip some symbols. This can
be a significant difference, qtbase:out consists of about 5 MB of those
symbols. As per [1], --strip-debug is included in --strip-unneeded, and
the debug files created also contain a copy of the information removed
by --strip-unneeded.

Linux From Scratch suggests that this option shouldn't be used on static
libraries [2], however other sources [3] indicate otherwise. Building a
toolchain with this patch succeeds, and the result works fine for
'gcc -static hello-world.c'.

[1]: https://stackoverflow.com/a/52555093
[2]: http://www.linuxfromscratch.org/lfs/view/9.1/chapter05/stripping.html
[3]: https://www.technovelty.org/linux/stripping-shared-libraries.html

* guix/build/gnu-build-system.scm (strip): Use --strip-unneeded.
 2020-09-19 15:37:07 +02:00
Greg Hogan d7f776888b
gnu: boost: Update to 1.74.0. 
* gnu/packages/boost.scm (boost): Update to 1.74.0.
[source]: Remove patches and defunct substitute.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan 66e3812e2f
gnu: llvm: Update to 10.0.1. 
* gnu/packages/llvm.scm (llvm, clang, clang-runtime,
clang-toolchain, lld): Update to 10.0.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan e364758d44
gnu: openblas: Update to 0.3.10. 
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan 8944f1a4a4
gnu: Python 3: Update to 3.8.5. 
* gnu/packages/python.scm (python-3.8): Update to 3.8.5.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-09-18 14:41:48 -04:00
Tobias Geerinckx-Rice e943343912
gnu: cups-filters: Wrap with grep. 
* gnu/packages/cups.scm (cups-filters)[inputs]: Add grep.
[arguments]: Wrap all filters with it in $PATH.
 2020-09-18 18:57:59 +02:00
Vagrant Cascadian 7467f9857d
gnu: commencement: bash-mesboot0: Remove store file name. 
This is a follow-up to commit d9484fba91, and
fixes "make dist".

* gnu/packages/commencement (bash-mesboot0): Remove reference to store item.
 2020-09-16 23:30:01 +02:00
Maxim Cournoyer fa8fe90edb
Merge remote-tracking branch 'origin/master' into core-updates 2020-09-14 16:17:19 -04:00
Ricardo Wurmus d60739dff2
gnu: r-quantreg: Update to 5.67. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 2feb943558
gnu: r-cowplot: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 995641369e
gnu: r-ggdendro: Update to 0.1.22. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 7e2aa0efba
gnu: r-stringi: Update to 1.5.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 98f76dbcfb
gnu: r-mass: Update to 7.3-53. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 1c1b941902
gnu: r-diversitree: Update to 0.9-14. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 8731d274ae
gnu: r-seurat: Update to 3.2.1. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus e6711231ed
gnu: r-rfast: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 0982ffa898
gnu: r-scatterpie: Update to 0.1.5. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus df2210be8b
gnu: r-forecast: Update to 8.13. 
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus ad10a45225
gnu: r-gamlss: Update to 5.2-0. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus bf37420fe7
gnu: r-parameters: Update to 0.8.5. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus 515b746945
gnu: r-systemfonts: Update to 0.3.1. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus 3f67fb11cf
gnu: r-dalex: Update to 2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus ef59d57841
gnu: r-sf: Update to 0.9-6. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus b426f79602
gnu: r-deldir: Update to 0.1-29. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0435f7eec1
gnu: r-shinyjs: Update to 2.0.0. 
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus 11f448ba74
gnu: r-etm: Update to 1.1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus ffe714b5f4
gnu: r-fields: Update to 11.4. 
* gnu/packages/cran.scm (r-fields): Update to 11.4.
 2020-09-14 19:07:46 +02:00