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Author SHA1 Message Date
Ricardo Wurmus c827f20286
gnu: Add r-chipkernels. 
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools. 
* gnu/packages/statistics.scm (r-gtools): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus f05c7eb48d
gnu: Add r-kernlab. 
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus d71605294f
gnu: Add r-wgcna. 
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e619a5c245
gnu: Add r-r4rna. 
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus e48ddb9628
doc: Suggest installing gvfs. 
* gnu/system/examples/desktop.tmpl: Add gvfs to the system-wide list of
packages.
 2016-11-28 22:09:38 +01:00
Ricardo Wurmus eb21d24806
gnu: lv2: Update to 1.14.0. 
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
 2016-11-28 22:08:37 +01:00
Ricardo Wurmus 1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f. 
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
 2016-11-28 22:07:20 +01:00
Efraim Flashner 5e9cce55b5
gnu: ntp: Update to 4.2.8p9. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
 2016-11-28 21:56:30 +02:00
Efraim Flashner d35de59b64
gnu: ntp: Fix indentation. 
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
 2016-11-28 20:53:14 +02:00
John Darrington f0ddc5e55b
gnu: Add editres. 
* gnu/packages/xorg.scm (editres): New variable.
 2016-11-28 18:22:15 +01:00
Ben Woodcroft 9926875572
gnu: Add newick-utils. 
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
 2016-11-28 09:00:41 +10:00
Ludovic Courtès aa28ecc40a
pull: Hack to allow compilation with older Guile-SSH packages. 
Reported by iyzsong@member.fsf.org (宋文武)
at <https://lists.gnu.org/archive/html/guix-devel/2016-11/msg01045.html>.

* build-aux/build-self.scm (build): Set 'LTDL_LIBRARY_PATH' when
GUILE-SSH has a "0.9." version prefix.
 2016-11-27 23:06:09 +01:00
Efraim Flashner c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues]. 
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
 2016-11-27 22:19:55 +02:00
Tobias Geerinckx-Rice f6c44a3f04
gnu: gphoto2: Update to 2.5.11. 
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
 2016-11-27 20:58:18 +01:00
Tobias Geerinckx-Rice 69874f5fd2
gnu: libgphoto2: Update to 2.5.11. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
 2016-11-27 20:58:18 +01:00
Leo Famulari f27ec24d88
gnu: beets: Update to 1.4.1. 
* gnu/packages/music.scm (beets): Update to 1.4.1.
[inputs]: Add python2-discogs-client.
 2016-11-27 14:49:36 -05:00
Leo Famulari d3db5efbf9
gnu: Add python-discogs-client. 
* gnu/packages/music.scm (python-discogs-client,
python2-discogs-client): New variables.
 2016-11-27 14:49:36 -05:00
Leo Famulari 6782444764
gnu: python-rarfile: Update to 2.8. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-27 14:49:35 -05:00
Leo Famulari 8c4964dd51
gnu: python-jellyfish: Update to 0.5.6. 
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to
0.5.6.
 2016-11-27 14:49:35 -05:00
Leo Famulari b04d9b97c4
gnu: python-pylast: Update 1.6.0. 
* gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
 2016-11-27 14:49:35 -05:00
Leo Famulari daedf34db9
gnu: python-musicbrainzngs: Update to 0.6. 
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update
to 0.6.
[arguments]: Disable the test suites.
 2016-11-27 14:49:35 -05:00
Leo Famulari 38e81a2c55
gnu: python-munkres: Update to 1.0.8. 
* gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
 2016-11-27 14:49:34 -05:00
Leo Famulari 4228a79e6f
gnu: python-mutagen: Update to 1.35.1. 
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1.
[native-inputs]: Add python-pytest.
 2016-11-27 14:49:30 -05:00
Ricardo Wurmus 1bf5a7e920
gnu: gcj: Inherit source field from "gcc". 
* gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
 2016-11-27 19:00:57 +01:00
Ricardo Wurmus bac6409970
gnu: gcj: Correct paths in ARM patch. 
* gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
 2016-11-27 18:59:54 +01:00
Marius Bakke 8c4140e49e
gnu: notmuch: Update to 0.23.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.23.3.
[arguments]: Re-enable previously failing tests.
 2016-11-27 18:29:44 +01:00
Leo Famulari cd569f0d29
gnu: gcj: Fix typo in patch filename. 
This is a followup to commit dbf8f84f15.

Reported by quigonjinn on #guix.

* gnu/packages/gcc.scm (gcj)[source]: Fix typo.
 2016-11-27 10:57:33 -05:00
Danny Milosavljevic 7574cecf0f
gnu: python2-flask: Pick up python-flask's native-inputs. 
* gnu/packages/python.scm (python2-flask)[native-inputs]:
  Pick up python-flask's native-inputs.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-27 13:23:53 +01:00
Marius Bakke 988e1dca4b
gnu: udisks: Update to 2.1.8. 
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.8.
[home-page]: Use HTTPS.
 2016-11-27 11:13:50 +01:00
Maxim Cournoyer aef5055ff9
gnu: udisks: Add manpages. 
* gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml
and docbook-xsl.
[arguments]: Add #:make-flags to specify XML catalog files for manuals.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-27 11:10:31 +01:00
Ricardo Wurmus dbf8f84f15
gnu: gcj: Fix build on armhf. 
* gnu/packages/patches/gcj-arm-mode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gcc.scm (gcj): Add patch.
[arguments]: Delete failing tests.
 2016-11-27 10:04:57 +01:00
Ricardo Wurmus 253cdd6c14
gnu: Add biber-2.5. 
* gnu/packages/tex.scm (biber-2.5): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus d400068085
gnu: Add biber. 
* gnu/packages/tex.scm (biber): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus ebcf74daf8
gnu: Add perl-text-bibtex. 
* gnu/packages/tex.scm (perl-text-bibtex): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus 93863a5e72
gnu: Add perl-xml-libxslt. 
* gnu/packages/xml.scm (perl-xml-libxslt): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus df669244f9
gnu: perl-unicode-linebreak: Update to 2016.003. 
* gnu/packages/perl.scm (perl-unicode-linebreak): Update to 2016.003.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus 5d2ecbffb2
gnu: Add perl-unicode-collate. 
* gnu/packages/perl.scm (perl-unicode-collate): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus 37e7a4929f
gnu: Add perl-unicode-normalize. 
* gnu/packages/perl.scm (perl-unicode-normalize): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus dc32ee5381
gnu: Add perl-text-roman. 
* gnu/packages/perl.scm (perl-text-roman): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus 44c31aaae8
gnu: Add perl-text-csv-xs. 
* gnu/packages/perl.scm (perl-text-csv-xs): New variable.
 2016-11-27 09:48:42 +01:00
Ricardo Wurmus 0ef5191c88
gnu: Add perl-sort-key. 
* gnu/packages/perl.scm (perl-sort-key): New variable.
 2016-11-27 09:48:42 +01:00