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Author SHA1 Message Date
Ricardo Wurmus 9558da5bb4
gnu: Add python-bcbio-gff/biopython-1.73. 
* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): New variable.
 2023-01-25 00:22:53 +01:00
Ricardo Wurmus 45f2d7eb90
gnu: Add emacs-malyon. 
* gnu/packages/emacs-xyz.scm (emacs-malyon): New variable.
 2023-01-25 00:22:53 +01:00
Sughosha dfcd913578
gnu: Add synthpod. 
* gnu/packages/music.scm (synthpod): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-25 00:22:53 +01:00
Maxim Cournoyer f9c151b936
gnu: rpm: Update to 4.18.0. 
* gnu/packages/package-management.scm (rpm): Update to 4.18.0.
[arguments]: Improve robustness of fix-lua-check phase.  Delete obsolete
set-nss-library-path phase.
[inputs]: Remove bdb, cpio, nspr, and nss.  Move python to...
[native-inputs]: ... here.
 2023-01-24 16:48:33 -05:00
Bruno Victal f912d5c740
doc: Substitute @deffn usage with @defvar for Scheme variables. 
* doc/guix.texi (Base Services) (Networking Setup)
(Networking Services) (Printing Services) (Desktop Services)
(Sound Services) (Database Services) (Mail Services) (Messaging Services)
(File-Sharing Services) (Web Services) (DNS Services)
(Power Management Services) (Virtualization Services) (Linux Services)
(Miscellaneous Services): Substitute @deffn usage with @defvar for Scheme variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:51:33 +01:00
Bruno Victal f88e855f9f
doc: Use @defvar instead of @defvr for Scheme variables. 
* doc/guix.texi (Build Systems) (Search Paths) (The Store)
(The Store Monad) (File Systems) (Mapped Devices) (User Accounts)
(Locales) (Base Services) (Scheduled Job Execution) (Log Rotation)
(Networking Setup) (Networking Services) (Unattended Upgrades)
(X Window) (Desktop Services) (Database Services) (Messaging Services)
(Kerberos Services) (Web Services) (Certificate Services) (VPN Services)
(Network File System) (Samba Services) (Power Management Services)
(Audio Services) (Virtualization Services) (Linux Services) (Hurd Services)
(Miscellaneous Services) (Setuid Programs) (Name Service Switch)
(Initial RAM Disk) (Service Reference) (Shepherd Services)
(Essential Home Services) (Mcron Home Service)
(Power Management Home Services) (Shepherd Home Service) (Secure Shell)
(Desktop Home Services) (Guix Home Services) (Supported Platforms)
(Instantiate an Image) (image-type Reference): Use @defvar instead of @defvr for Scheme variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:51:02 +01:00
Bruno Victal d2454e91b3
doc: Fix incorrect use of @defvar. 
* doc/guix.texi (Monitoring Services) (VNC Services)
(Samba Services) (Game Services) (PAM Mount Service)
(Guix Services): Fix incorrect use of @defvar.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:49:45 +01:00
Ludovic Courtès 5aef6a55a2
doc: Document the 'release-monitoring-url' package property. 
* doc/guix.texi (Invoking guix refresh): Mention the
'release-monitoring-url' property.
 2023-01-23 23:23:08 +01:00
Ludovic Courtès 3b744e9975
gnu: flint: Add 'release-monitoring-url' property. 
* gnu/packages/algebra.scm (flint)[properties]: New field.
 2023-01-23 23:23:08 +01:00
Ludovic Courtès e6c01420db
channels: 'channel->code' emits 'channel' field only when necessary. 
* guix/channels.scm (channel->code): Emit 'commit' field only when it is
true.
 2023-01-23 23:23:07 +01:00
Ludovic Courtès a8792bc796
import: opam: Do not crash when description is missing. 
Previous 'guix import opam coccinelle' would crash due to the lack of a
description.

* guix/import/opam.scm (opam->guix-package): Call 'beautify-description'
only when "description" metadata is available.
 2023-01-23 23:23:07 +01:00
Maxim Cournoyer 9e4f1f8c33
gnu: universal-ctags: Update to 6.0.20230122.0. 
* gnu/packages/code.scm (universal-ctags): Update to 6.0.20230122.0.
 2023-01-23 12:10:09 -05:00
Clément Lassieur 4da229d777
gnu: woof: Update to 20220202. 
* gnu/packages/web.scm (woof): Update to 20220202.
[source]: Change to Github.
[arguments]: Update source path, change to python3, remove chmod.
[inputs]: Change to python3.
 2023-01-23 16:53:14 +01:00
Pierre Neidhardt 3a1b18aa45
gnu: Add dwarfs. 
* gnu/packages/file-systems.scm (dwarfs): New variable.
 2023-01-23 14:19:11 +01:00
Pierre Neidhardt 04ade01beb
gnu: Add libdwarf. 
* gnu/packages/elf.scm (libdwarf): New variable.
 2023-01-23 14:19:11 +01:00
Jan (janneke) Nieuwenhuizen be07379630
gnu: dezyne: Update to 2.17.0. 
* gnu/packages/dezyne.scm (dezyne): Update to 2.17.0.
 2023-01-23 13:10:59 +01:00
Maxim Cournoyer 2b1e5cb6a8
gnu: diffoscope: Simplify the build-man-page phase. 
* gnu/packages/diffoscope.scm (diffoscope) [phases]: Remove MAKE-FLAGS binding
in the build-man-page phase, as the python-build-system has no such argument.
 2023-01-22 19:50:48 -05:00
Maxim Cournoyer e5dc6541fe
gnu: diffoscope: Fix indentation. 
* gnu/packages/diffoscope.scm (diffoscope): Fix indentation.
 2023-01-22 19:46:49 -05:00
Vagrant Cascadian eea8a872ff
gnu: diffoscope: Update to 233. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 233.
[native-inputs]: Add lzip and python-pypdf, drop python-pypdf2.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 19:40:32 -05:00
Vagrant Cascadian f8400b2cbd
gnu: Add python-pypdf. 
* gnu/packages/pdf.scm (python-pypdf): New variable.
* gnu/packages/patches/python-pypdf-annotate-tests-appropriately.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register patch.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 19:40:10 -05:00
Sergiu Ivanov 356e33641a
gnu: volctl: Update to 0.9.3. 
Fixes <https://issues.guix.gnu.org/58120>.

* gnu/packages/gtk.scm (volctl): Update to 0.9.3.
[arguments]: Update substitutions in patch-path phase and delete
trailing #t.
[inputs]: Delete pulseaudio.  Move gtk+ to...
[propagated-inputs] ... here.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 16:24:10 -05:00
Sergiu Ivanov 7a932ccf85
gnu: Add python-pulsectl. 
* gnu/packages/audio.scm (python-pulsectl): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 16:24:04 -05:00
Sergiu Ivanov 9aa674151a
gnu: volctl: Make the synopsis line shorter. 
* gnu/packages/gtk.scm (volctl): Make the synopsis line shorter.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 16:14:41 -05:00
Simon Tournier 5965d74c8c
gnu: libarchive: Mention bsdcat, bsdcpio and bsdtar in description. 
* gnu/packages/backup.scm (libarchive)[description]: Mention the bsdcat,
bsdcpio and bsdtar commands.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 14:16:11 -05:00
Ludovic Courtès 6ffeef92e6
services: hpcguix-web: Provide default values. 
* gnu/services/web.scm (<hpcguix-web-configuration>)[specs]: Default to #f.
(hpcguix-web-shepherd-service): Do not pass '--config' when SPECS is #f.
(hpcguix-web-service-type)[default-value]: New field.
* doc/guix.texi (Web Services): Adjust accordingly.
 2023-01-22 18:12:09 +01:00
Ludovic Courtès e1dbac04c3
gnu: hpcguix-web: Update to 0.3.0. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.3.0.
[inputs]: Add GUILE-SYNTAX-HIGHLIGHT.
[arguments]: In 'wrap-program' phase, take guile-syntax-highlight into
account.
* gnu/tests/web.scm (%hpcguix-web-specs): Remove 'define'.
* doc/guix.texi (Web Services): Adjust accordingly.
 2023-01-22 18:12:09 +01:00
Andreas Enge 15eda456a7
gnu: pari-gp: Update to 2.15.2. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.15.2.
 2023-01-22 18:03:07 +01:00
Tobias Geerinckx-Rice 091c4d7f0e
gnu: libxmlb: Update to 0.3.10. 
* gnu/packages/xml.scm (libxmlb): Update to 0.3.10.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice d2d38add07
gnu: libucl: Update to 0.8.2. 
* gnu/packages/wm.scm (libucl): Update to 0.8.2.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice f887a0085d
gnu: memcached: Update to 1.6.18. 
* gnu/packages/databases.scm (memcached): Update to 1.6.18.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice 6fb3dfdfa9
gnu: klavaro: Update to 3.14. 
* gnu/packages/education.scm (klavaro): Update to 3.14.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice 494a2e0707
gnu: gvfs: Update to 1.50.3. 
* gnu/packages/gnome.scm (gvfs): Update to 1.50.3.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice 4ce0304c70
gnu: barrage: Update to 1.0.6. 
* gnu/packages/games.scm (barrage): Update to 1.0.6.
 2023-01-15 01:00:21 +01:00
Liliana Marie Prikler 3174affaf4
gnu: gnome-latex: Update to 3.44.0. 
* gnu/packages/gnome.scm (gnome-latex): Update to 3.44.0.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler 7fef5c1e2a
gnu: devhelp: Update to 43.0. 
* gnu/packages/gnome.scm (devhelp): Update to 43.0.
[arguments]: Update ‘skip-gtk-update-icon-cache’ accordingly.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler 14d8c4fe6f
gnu: gedit: Update to 44.1. 
* gnu/packages/gnome.scm (gedit): Update to 44.1.
[native-inputs]: Add gtk-doc.
[inputs]: Add amtk and tepl.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler 19e1bab4a0
gnu: amtk: Update to 5.6.1. 
* gnu/packages/gnome.scm (amtk): Update to 5.6.1.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler d88dcdadbd
gnu: tepl: Update to 6.4.0. 
* gnu/packages/gnome.scm (tepl): Update to 6.4.0.
 2023-01-22 12:54:36 +01:00
André Batista a5a990d074
gnu: lighttpd: Update to 1.4.68. 
* gnu/packages/web.scm (lighttpd): Update to 1.4.68.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-01-22 11:27:56 +02:00
Sughosha 1fe2088eb9
gnu: gnome-shell-extension-radio: Update to 20. 
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-radio): Update to 20.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-01-22 10:05:30 +01:00
Wamm K. D c49f2ac412
gnu: Add libxapp. 
* gnu/packages/cinnamon.scm (libxapp): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-01-22 10:05:30 +01:00
Liliana Marie Prikler 1267cc97a9
gnu: emacs-minimal: Do not patch compilation driver. 
The ‘patch-compilation-driver’ phase pulls in libgccjit even though it has
been deliberately removed from emacs-minimal.

* gnu/packages/emacs.scm (emacs)[#:phases]: Delete ‘patch-compilation-driver’.
 2023-01-22 10:05:30 +01:00
Liliana Marie Prikler ebea3815e6
gnu: emacs-company-box: Remove unclearly licensed icons from source. 
emacs-company-box bundles icons with unclear licenses.
Confer <https://github.com/emacs-lsp/lsp-treemacs/issues/123>.

* gnu/packages/emacs-xyz.scm (%emacs-company-box-upstream-source): New variable.
(emacs-company-box)[source]: Use a computed origin to remove unclearly licensed
icons.  Also remove source code which mentions said icons.
 2023-01-22 10:05:30 +01:00
r0man e0d2ec418b
gnu: emacs-lsp-treemacs: Remove unclearly licensed icons. 
emacs-lsp-treemacs bundles icons with unclear licenses.
See also <https://github.com/emacs-lsp/lsp-treemacs/issues/123>.

* gnu/packages/emacs-xyz.scm (%emacs-lsp-treemacs-upstream-source): New
variable.
(emacs-treemacs)[source]: Use a computed origin to remove unclearly licensed
icons.  Also remove source code which mentions said icons.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-01-22 10:05:30 +01:00
Mădălin Ionel Patrașcu 6564a04efa
gnu: Add perl-memory-usage. 
* gnu/packages/perl.scm (perl-memory-usage): New variable.
 2023-01-22 09:17:37 +01:00
Mădălin Ionel Patrașcu ac32f93df3
gnu: Add r-anvil. 
* gnu/packages/bioconductor.scm (r-anvil): New variable.
 2023-01-22 09:16:18 +01:00
Mădălin Ionel Patrașcu 452039f35e
gnu: Add r-rapiclient. 
* gnu/packages/cran.scm (r-rapiclient): New variable.
 2023-01-22 09:15:27 +01:00
Ricardo Wurmus 9fc3e4fb26
gnu: r-speaq: Fix description. 
* gnu/packages/bioconductor.scm (r-speaq)[description]: Reword.
 2023-01-22 09:12:50 +01:00
Mădălin Ionel Patrașcu 3d9516344e
gnu: Add r-alpsnmr. 
* gnu/packages/bioconductor.scm (r-alpsnmr): New variable.
 2023-01-22 08:56:51 +01:00
Mădălin Ionel Patrașcu b374a45eb0
gnu: Add r-speaq. 
* gnu/packages/bioconductor.scm (r-speaq): New variable.
 2023-01-22 08:56:51 +01:00