TakeV/guix
1
0
Fork 0
Code Issues Pull requests Packages Projects Releases Wiki Activity
15681 commits 102 branches 35 tags 561 MiB
Commit graph

11790 commits

Author SHA1 Message Date
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 2ffcd6607b
gnu: r-curl: Update to 2.2. 
* gnu/packages/web.scm (r-curl): Update to 2.2.
 2016-10-26 16:23:26 +02:00
Ricardo Wurmus a46cc723ff
gnu: r-seqinr: Update to 3.3-3. 
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
 2016-10-26 16:23:26 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0. 
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus c70271ec48
gnu: bioperl-minimal: Update to 1.7.0. 
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
 2016-10-26 16:23:24 +02:00
Marius Bakke 39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a. 
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.

This is a follow-up to 47a04fca99.

* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
 2016-10-26 15:03:42 +01:00
ng0 b2a2232c33
gnu: python-certifi: Update to 2016.8.31. 
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 14:31:16 +03:00
Marius Bakke 07b1fb8675
gnu: security-token: Use 'license:' prefix. 
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
 2016-10-26 11:00:58 +01:00
Marius Bakke f9c339603d
gnu: yubico.scm: Rename to security-token.scm. 
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2016-10-26 10:45:49 +01:00
Marius Bakke 7a6213cbd7
gnu: offlineimap: Install documentation. 
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
 2016-10-26 10:45:49 +01:00
Marius Bakke d2a9b531fb
gnu: notmuch: Update to 0.23.1. 
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
 2016-10-26 10:45:49 +01:00
Efraim Flashner 8f5f6c922f
gnu: vlc: Add x265 support. 
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
 2016-10-26 12:19:19 +03:00
Efraim Flashner e3cb00d210
gnu: gst-plugins-bad: Add x265 support. 
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
 2016-10-26 12:19:18 +03:00
Efraim Flashner d505801a06
gnu: ffmpeg: Add x265 support. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
 2016-10-26 12:19:18 +03:00
Efraim Flashner 7bc7ffc243
gnu: Add x265. 
* gnu/packages/video.scm (x265): New variable.
 2016-10-26 12:19:18 +03:00
ng0 1df790d50d
gnu: Add psyclpc. 
* gnu/packages/psyc.scm (psyclpc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 11:29:35 +03:00
Ludovic Courtès 19262a718e
gnu: opensmtpd: Fix 'license' field. 
* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
 2016-10-26 10:19:18 +02:00
Ricardo Wurmus 59198f8fff
gnu: r-genomationdata: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
 2016-10-26 09:28:23 +02:00
Ricardo Wurmus e357bec836
gnu: r-bamsignals: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
 2016-10-26 09:28:23 +02:00
Ricardo Wurmus 53ca52f013
gnu: r-rhtslib: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
 2016-10-26 09:28:23 +02:00
Ricardo Wurmus da22da862b
gnu: r-zlibbioc: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
 2016-10-26 09:28:22 +02:00
Ricardo Wurmus 809251e164
gnu: r-motifrg: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
 2016-10-26 09:28:22 +02:00
Ricardo Wurmus 21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
 2016-10-26 09:28:22 +02:00
Ricardo Wurmus 51c3c4900f
gnu: r-genomation: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
 2016-10-26 09:28:21 +02:00
Ricardo Wurmus e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
 2016-10-26 09:28:21 +02:00
Ricardo Wurmus acf6f7e0c3
gnu: r-impute: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
 2016-10-26 09:28:21 +02:00
Ricardo Wurmus 3d74c04451
gnu: r-bsgenome: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
 2016-10-26 09:28:20 +02:00
Ricardo Wurmus 30ec4de738
gnu: r-topgo: Update to 2.26.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
 2016-10-26 09:28:20 +02:00
Ricardo Wurmus 3587b464fc
gnu: r-graph: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
 2016-10-26 09:28:19 +02:00
Ricardo Wurmus d1b1587cad
gnu: r-go-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
 2016-10-26 09:28:19 +02:00
Ricardo Wurmus b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
 2016-10-26 09:28:18 +02:00
Ricardo Wurmus 6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
 2016-10-26 09:28:18 +02:00
Ricardo Wurmus 4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
 2016-10-26 09:28:18 +02:00
Ricardo Wurmus 08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
 2016-10-26 09:28:17 +02:00
Ricardo Wurmus c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
 2016-10-26 09:28:17 +02:00
Ricardo Wurmus 47d39b6e7a
gnu: r-biostrings: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
 2016-10-26 09:28:17 +02:00
Ricardo Wurmus 89559a124e
gnu: r-biocparallel: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
 2016-10-26 09:28:16 +02:00
Ricardo Wurmus 9405333186
gnu: r-biomart: Update to 2.30.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
 2016-10-26 09:28:16 +02:00
Ricardo Wurmus e45dc05781
gnu: r-annotationdbi: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
 2016-10-26 09:28:16 +02:00
Ricardo Wurmus 464870caf7
gnu: r-biobase: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
 2016-10-26 09:28:15 +02:00
Ricardo Wurmus 92a740afac
gnu: r-genomicranges: Update to 1.26.1. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
 2016-10-26 09:28:15 +02:00
Ricardo Wurmus 1d048589ca
gnu: r-xvector: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus 753bc32b8e
gnu: r-limma: Update to 3.30.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus 37d96f1dde
gnu: r-variantannotation: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus 5e48005fa9
gnu: r-edger: Update to 3.16.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
 2016-10-26 09:28:14 +02:00
Ricardo Wurmus dece310a25
gnu: r-genomeinfodb: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
 2016-10-26 09:28:13 +02:00
Ricardo Wurmus 7f354dafb1
gnu: r-iranges: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
 2016-10-26 09:28:13 +02:00
Ricardo Wurmus b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
 2016-10-26 09:28:13 +02:00
Ricardo Wurmus 22c5d736af
gnu: r-dnacopy: Update to 1.48.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
 2016-10-26 09:28:12 +02:00
Ricardo Wurmus 5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
 2016-10-26 09:28:12 +02:00
Ricardo Wurmus f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
 2016-10-26 09:28:11 +02:00
Ricardo Wurmus c9b5046a18
gnu: r-grohmm: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
 2016-10-26 09:28:11 +02:00
Ricardo Wurmus 1265d3877b
gnu: r-systempiper: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
 2016-10-26 09:28:11 +02:00
Ricardo Wurmus b87b41a74d
gnu: r-shortread: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
 2016-10-26 09:28:10 +02:00
Ricardo Wurmus ae6899b683
gnu: r-gostats: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
 2016-10-26 09:28:10 +02:00
Ricardo Wurmus 816599c1e7
gnu: r-category: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
 2016-10-26 09:28:10 +02:00
Ricardo Wurmus 558d02c361
gnu: r-gseabase: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
 2016-10-26 09:28:09 +02:00
Ricardo Wurmus 700c780dcf
gnu: r-rbgl: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
 2016-10-26 09:28:09 +02:00
Ricardo Wurmus 55cd914c3d
gnu: r-annotationforge: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
 2016-10-26 09:28:09 +02:00
Ricardo Wurmus e1db8dd813
gnu: r-deseq2: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
 2016-10-26 09:28:08 +02:00
Ricardo Wurmus 1e66e71921
gnu: r-genefilter: Update to 1.56.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
 2016-10-26 09:28:08 +02:00
Ricardo Wurmus 6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
 2016-10-26 09:28:08 +02:00
Ricardo Wurmus 9beba74f66
gnu: r-annotate: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
 2016-10-26 09:28:07 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2016-10-26 09:28:07 +02:00
Ricardo Wurmus f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10. 
* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
 2016-10-26 09:28:07 +02:00
Leo Famulari 6c18c4f603
gnu: elfutils: Update to 0.167. 
* gnu/packages/elf.scm (elfutils): Update to 0.167.
 2016-10-25 22:11:59 -04:00
Leo Famulari 3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447]. 
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
 2016-10-25 16:33:13 -04:00
Kei Kebreau 47a04fca99
gnu: mupdf: Fix CVE-2016-8674. 
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
 2016-10-25 12:50:50 -04:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries. 
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-25 14:56:37 +02:00
Ludovic Courtès 8ce84bf1f5
svg: Autoload Guile-RSVG and Guile-Cairo. 
Fixes compilation by 'guix pull' where Guile-{RSVG,Cairo} are missing.
Reported by Efraim Flashner.

* gnu/build/svg.scm: Use 'module-autoload!' rather than 'module-use!'.
 2016-10-25 13:57:28 +02:00
Mark H Weaver e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35.  Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-24 22:53:18 -04:00
Ludovic Courtès ffde82c9ec
system: grub: Use Guile-{RSVG,Cairo} instead of Inkscape + ImageMagick. 
Based on a suggestion by Andy Wingo at
<https://lists.gnu.org/archive/html/guix-devel/2015-08/msg00753.html>.

* gnu/build/svg.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/system/grub.scm (svg->png): Add #:width and #:height.  Rewrite to
use (gnu build svg).
(resize-image): Remove.
(grub-background-image): Adjust accordingly.
 2016-10-25 01:21:28 +02:00
Thomas Danckaert d91025e3d0
gnu: Add coda. 
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:05:20 +02:00
Amirouche 3b5783fcd9
gnu: Add guile-bytestructures 
* gnu/packages/guile.scm (guile-bytestructures): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 22:51:52 +02:00
Julien Lepiller 8c00b83818
services: nginx: Virtual hosts are first-class configuration items. 
* gnu/services/web.scm (<nginx-vhost-configuration>): New record type.
(config-domain-strings): New procedure.
(config-index-strings): New procedure.
(default-nginx-vhost-config): New procedure.
(default-nginx-config): Add vhost support and temporary directories
(nginx-activation): Create temporary directories
(nginx-service): Add vhost-list key.
* doc/guix.texi (Web Services): Document 'nginx-vhost-configuration'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 22:50:40 +02:00
Efraim Flashner 405be8dceb
gnu: efl: Update to 1.18.2. 
* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
 2016-10-24 22:01:00 +03:00
Kei Kebreau c201b28bfa
gnu: red-eclipse: Update to 1.5.6. 
* gnu/packages/games.scm (red-eclipse): Update to 1.5.6.
[arguments]: Adjust phases.
 2016-10-24 13:25:39 -04:00
ng0 9c798f9036
gnu: Add whois. 
* gnu/packages/networking.scm (whois): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-24 17:40:53 +01:00
宋文武 bd1b1e0517
gnu: gnumeric: Use 'glib-or-gtk-build-system'. 
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/gnome.scm (gnumeric)[build-systems]: Switch to
GLIB-OR-GTK-BUILD-SYSTEM.
 2016-10-24 19:19:34 +08:00
Leo Famulari 02cfea6627
gnu: musl: Fix CVE-2016-8859. 
* gnu/packages/patches/musl-CVE-2016-8859.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/musl.scm (musl)[source]: Use it.
 2016-10-23 18:08:17 -04:00
Kei Kebreau 8e3017cc65
gnu: windowmaker: Update to 0.95.7. 
* gnu/packages/gnustep.scm (windowmaker): Update to 0.95.7.
 2016-10-23 17:52:28 -04:00
Arun Isaac 0f6b6cb996
gnu: gajim: Update to 0.16.6. 
* gnu/packages/messaging.scm (gajim): Update to 0.16.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-23 17:40:50 -04:00
Arun Isaac d6465efaa9
gnu: gajim: License is "version 3 only". 
* gnu/packages/messaging.scm (gajim)[license]: Change to GPL3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-23 17:40:50 -04:00
ng0 2dfa90721d
gnu: weechat: Update to 1.6. 
* gnu/packages/irc.scm (weechat): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-23 17:10:22 -04:00
Danny Milosavljevic 903276d066
gnu: Add python-flask-sqlalchemy. 
* gnu/packages/python.scm (python-flask-sqlalchemy): New variable.
 2016-10-23 19:41:11 +02:00
Danny Milosavljevic 31288222d4
gnu: Add python-flask-basicauth. 
* gnu/packages/python.scm (python-flask-basicauth): New variable.
 2016-10-23 19:41:10 +02:00
Danny Milosavljevic 999d964d64
gnu: Add python-flask-restful. 
* gnu/packages/python.scm (python-flask-restful): New variable.
 2016-10-23 19:31:39 +02:00
Danny Milosavljevic 0990edfecb
gnu: Add python-aniso8601. 
* gnu/packages/python.scm (python-aniso8601): New variable.
 2016-10-23 19:31:39 +02:00
Rene Saavedra 04ce840a82
gnu: Add bluefish. 
* gnu/packages/gnome.scm (bluefish): New variable.
 2016-10-23 19:26:30 +02:00
Tobias Geerinckx-Rice 373e765ec3
gnu: openconnect: Update to 7.07. 
* gnu/packages/vpn.scm (openconnect): Update to 7.07.
 2016-10-23 16:33:04 +02:00
Tobias Geerinckx-Rice bdc74f07c3
gnu: weex: Use ‘modify-phases’. 
* gnu/packages/ftp.scm (weex): Use the ‘modify-phases’ syntax.
 2016-10-23 16:33:04 +02:00
Ricardo Wurmus 5f5b57681c
gnu: Add guitarix-lv2. 
* gnu/packages/audio.scm (guitarix-lv2): New variable.
 2016-10-23 15:47:35 +02:00
Ricardo Wurmus 84d53724ba
gnu: Add mod-utilities. 
* gnu/packages/music.scm (mod-utilities): New variable.
 2016-10-23 15:47:35 +02:00
Ricardo Wurmus 3d4b1bb9a1
gnu: Add jalv-select. 
* gnu/packages/music.scm (jalv-select): New variable.
 2016-10-23 15:47:35 +02:00
Ricardo Wurmus c2c9e74891
gnu: Add mod-host. 
* gnu/packages/music.scm (mod-host): New variable.
 2016-10-23 15:47:35 +02:00
Efraim Flashner 875dc49b00
gnu: jasper: Update to 1.900.13. 
* gnu/packages/image.scm (jasper): Update to 1.900.13.
[arguments]: Build with -std=c99 support.
 2016-10-23 16:32:04 +03:00
ng0 5cb7974109
gnu: Add libpsyc. 
* gnu/packages/psyc.scm (libpsyc): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-23 16:32:03 +03:00
ng0 3a14b2bcf6
gnu: Add perl-net-psyc. 
* gnu/packages/psyc.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-23 16:32:03 +03:00
Ricardo Wurmus 860eda621b
gnu: vmpk: Remove package. 
The vmpk package has been broken for a while and attempts to fix it have
failed.  The package "jack-keyboard" offers similar features.

* gnu/packages/music.scm (vmpk): Remove variable.
 2016-10-23 15:06:36 +02:00
Ricardo Wurmus 1a0633e79b
gnu: Add supertuxkart. 
* gnu/packages/games.scm (supertuxkart): New variable.
 2016-10-23 15:05:19 +02:00
Efraim Flashner 9ba88890f7
gnu: gambit-c: Update to 4.8.5. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.5.
[source]: Update source tarball name.
 2016-10-23 14:37:36 +03:00
Efraim Flashner 27668c79de
gnu: gambit-c: Use 'modify-phases' syntax. 
* gnu/packages/scheme.scm (gambit-c)[arguments]: Use 'modify-phases'
syntax.
 2016-10-23 14:37:36 +03:00
Efraim Flashner 71dcdaf31f
gnu: gambit-c: Update to 4.7.9. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.7.9.
 2016-10-23 14:37:36 +03:00
Efraim Flashner fb685df8f8
gnu: bigloo: Use 'modify-phases' syntax. 
* gnu/packages/scheme.scm (bigloo)[arguments]: Use 'modify-phases' syntax.
 2016-10-23 14:37:36 +03:00
Efraim Flashner 04014de6f5
gnu: hop: Use 'modify-phases' syntax. 
* gnu/packages/scheme.scm (hop)[arguments]: Use 'modify-phases' syntax.
 2016-10-23 14:37:35 +03:00
Efraim Flashner eccd1d24c9
gnu: hop: Update to 2.5.1. 
* gnu/packages/scheme.scm (hop): Update to 2.5.1.
[source]: Remove patch.
* gnu/packages/patches/hop-bigloo-4.0b.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-23 14:37:28 +03:00
Leo Famulari 5ed7f28da5
gnu: mpg321: Update to 0.3.2. 
* gnu/packages/mp3.scm (mpg321): Update to 0.3.2.
 2016-10-23 05:01:02 -04:00
Leo Famulari d78b652c16
gnu: mpg123: Update to 1.23.8. 
* gnu/packages/mp3.scm (mpg123): Update to 1.23.8.
 2016-10-23 04:55:26 -04:00
Efraim Flashner 844f4f6e62
gnu: beast: Disable parallel-build. 
* gnu/packages/music.scm (beast)[arguments]: Disable parallel builds to
prevent a race condition.
 2016-10-23 07:47:03 +03:00
Efraim Flashner d661894159
gnu: infamous-plugins: Remove compiler optimizations. 
* gnu/packages/audio.scm (infamous-plugins)[arguments]: Add phase
removing built-in compiler optimizations in the source code.
 2016-10-23 07:47:03 +03:00
Efraim Flashner 7ca6830482
gnu: python2-validictory: Add missing input. 
* gnu/packages/python.scm (python2-validictory)[native-inputs]: Add
python2-setuptools.
(python-validictory)[properties]: New field.
 2016-10-23 07:47:03 +03:00
Efraim Flashner ff1e2b59bf
gnu: ffmpeg: Update to 3.1.5. 
* gnu/packages/video.scm (ffmpeg): Update to 3.1.5.
 2016-10-23 07:47:03 +03:00
Efraim Flashner 04ed5444fe
gnu: mutt: Update to 1.7.1. 
* gnu/packages/mail.scm (mutt): Update to 1.7.1.
 2016-10-23 07:47:03 +03:00
ng0 ad6198a5f9
gnu: Add vim-full. 
* gnu/packages/vim.scm (vim-full): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-23 07:47:02 +03:00
Efraim Flashner 84a79b8c42
gnu: aria2: Update to 1.28.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.28.0.
 2016-10-23 07:46:49 +03:00
Mark H Weaver 35680748a6
gnu: linux-libre: Update to 4.8.4. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.4.
 2016-10-23 00:21:20 -04:00
Mark H Weaver 62cf3ae09b
gnu: linux-libre@4.4: Update to 4.4.27. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.27.
 2016-10-23 00:18:42 -04:00
John Darrington 0881b616f4
gnu: guile-ncurses: Update to version 2.0. 
* gnu/packages/guile.scm (guile-ncurses): Update version to 2.0.
 2016-10-22 17:24:39 +02:00
Alex Sassmannshausen ed53a07145
gnu: perl-test-mockobject: Update to 1.20150527. 
* gnu/packages/perl.scm (perl-test-mockobject): Update to 1.20150527.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-22 02:20:15 -04:00
Nicolas Goaziou 3ae48df120
gnu: wireshark: Update to 2.2.1. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-22 02:20:15 -04:00
Nicolas Goaziou a4c7f40cec
gnu: giac-xcas: Update to 1.2.2-95. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-95.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-22 02:20:10 -04:00
Mark H Weaver a861665b75
gnu: linux-libre@4.1: Add fix for CVE-2016-5195. 
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-4.1): Add patch.
 2016-10-22 00:30:38 -04:00
Mark H Weaver 64de7d1ceb
gnu: make-linux-libre: Add #:patches keyword argument. 
* gnu/packages/linux.scm (make-linux-libre): Add 'patches' keyword
argument.
 2016-10-22 00:22:31 -04:00
Leo Famulari 57147c5d34
gnu: go-1.7: Update to 1.7.3. 
* gnu/packages/golang.scm (go-1.7): Update to 1.7.3.
 2016-10-21 19:03:21 -04:00
Leo Famulari bc8aa24b15
gnu: mpv: Update to 0.21.0. 
* gnu/packages/video.scm (mpv): Update to 0.21.0.
 2016-10-21 15:56:43 -04:00
Christopher Allan Webber 7d2ee59b4a
gnu: slim: Fix line numbers in slim-login.patch. 
This was causing build failures.

* gnu/packages/patches/slim-login.patch: Fix line numbers.
 2016-10-21 12:51:33 -05:00
Tobias Geerinckx-Rice 666619d088
gnu: lrzip: Update to 0.631. 
* gnu/packages/compression.scm (lrzip): Update to 0.631.
 2016-10-21 05:14:32 +02:00
Eric Bavier 17d50dfdbb
gnu: slim: Display login message. 
* gnu/packages/patches/slim-login.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
 2016-10-20 16:47:20 -05:00
Eric Bavier 0b71c15c80
gnu: slim: Do not reset session after failed login. 
* gnu/packages/patches/slim-reset.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/display-managers.scm (slim)[source]: Use it.
 2016-10-20 16:47:19 -05:00
Leo Famulari 5d5cdb7ca4
gnu: linux-libre-4.4: Update to 4.4.26. 
* gnu/packages/linux.scm (linux-libre): Update to 4.4.26.
 2016-10-20 17:42:49 -04:00
Leo Famulari 88576735bf
gnu: linux-libre: Update to 4.8.3. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.3.
 2016-10-20 17:42:49 -04:00
Roel Janssen d6e5de1ed2
gnu: Add emacs-d-mode. 
* gnu/packages/emacs.scm (emacs-d-mode): New variable.
 2016-10-20 22:26:41 +02:00
Ludovic Courtès 7f8393f3eb
gnu: python-mailmanclient: Fix typo. 
* gnu/packages/mail.scm (python-mailmanclient)[properties]: Fix typo.
 2016-10-20 15:44:48 +02:00
Ludovic Courtès dc0322b511
services: ntpd: Add 'allow-large-adjustment?' knob. 
Suggested by Leo Famulari.

* gnu/services/networking.scm (<ntp-configuration>)[allow-large-adjustment?]:
New field.
(ntp-shepherd-service): Honor it.
(ntp-service): Add #:allow-large-adjustment? and honor it.
* doc/guix.texi (Networking Services): Document it.
 2016-10-20 15:43:59 +02:00
ng0 6d3dda4ff5
gnu: Add python-mailmanclient. 
* gnu/packages/mail.scm (python-mailmanclient): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-20 11:47:12 +03:00
Hartmut Goebel 162e42d8c0
gnu: Add python-validictory and python2-validictory. 
* gnu/packages/python.scm (python-validictory, python2-validictory):
  New variables.
 2016-10-20 10:27:22 +02:00
Hartmut Goebel b7703c8131
gnu: Add python2-pathlib2. 
Adding only the Python 2 variant, since for Python 3 our minimum version
is 3.4 which already includes this package as part of the standard library.

gnu/packages/python.scm (python2-pathlib2): New variable.
 2016-10-20 10:09:59 +02:00
Hartmut Goebel 8ab59181a4
gnu: Add python-setproctitle and python2-setproctitle. 
* gnu/packages/python.scm (python-setproctitle, python2-setproctitle):
  New variables.
 2016-10-20 09:55:19 +02:00
Hartmut Goebel 9518fde1a1
gnu: Add chromaprint. 
* gnu/packages/mp3.scm (chromaprint): New variable.
 2016-10-20 09:55:19 +02:00
Roel Janssen 4644644ace
gnu: Add r-bioccheck. 
* gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
 2016-10-20 09:53:02 +02:00
Leo Famulari c645cef7da
gnu: openssh: Fix CVE-2016-8858. 
* gnu/packages/patches/openssh-memory-exhaustion.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
 2016-10-19 18:02:39 -04:00
Rene Saavedra 3ad7dce1d9
gnu: Add gucharmap. 
* gnu/packages/gnome.scm (gucharmap): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-19 23:20:19 +02:00
Carlos Sánchez de La Lama 80c9164fd7
gnu: %static-inputs: Use bash from PATH in bootstrap tar. 
gnu/packages/make-bootstrap.scm (%static-inputs): Use bash from PATH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-19 23:20:19 +02:00
Leo Famulari c21b1a1fbb
gnu: borg: Install more documentation. 
* gnu/packages/backup.scm (borg)[arguments]: Install more documentation in
'install-doc' phase. Use (srfi srfi-26).
 2016-10-19 16:00:26 -04:00
Tobias Geerinckx-Rice b332c823b7
gnu: gparted: Update to 0.27.0. 
* gnu/packages/disk.scm (gparted): Update to 0.27.0.
 2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice f5d3773268
gnu: ncftp: Use ‘modify-phases’. 
* gnu/packages/ftp.scm (ncftp): Use the ‘modify-phases’ syntax.
 2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice c17b5986f2
gnu: mcelog: Update to 143. 
* gnu/packages/linux.scm (mcelog): Update to 143.
 2016-10-19 19:34:17 +02:00
Tobias Geerinckx-Rice 5e270e8e8f
gnu: lftp: Update to 4.7.3. 
* gnu/packages/ftp.scm (lftp): Update to 4.7.3.
[source]: Use HTTPS. Remove patch.
[arguments]: Add ‘disable-impure-tests’ phase. Add #:configure-flags with
explicit location of readline headers.
[home-page]: Use HTTPS.
* gnu/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-10-19 19:34:17 +02:00
Leo Famulari d5ccf71ec6
gnu: awscli: Update to 1.11.5. 
* gnu/packages/python.scm (awscli): Update to 1.11.5.
[source]: Use pypi-uri.
[inputs]: Add python-s3transfer.
 2016-10-19 13:12:48 -04:00
Leo Famulari 94cffc6386
gnu: Add python-s3transfer. 
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer): New
variable.
 2016-10-19 13:12:48 -04:00
Leo Famulari e09f952d9f
gnu: python-botocore: Update to 1.4.62. 
* gnu/packages/python.scm (python-botocore, python2-botocore): Update to 1.4.62.
 2016-10-19 13:12:47 -04:00
Leo Famulari ecd68c53a6
gnu: python-rsa: Update to 3.4.2. 
* gnu/packages/python.scm (python-rsa, python2-rsa): Update to 3.4.2.
 2016-10-19 13:12:47 -04:00
Leo Famulari def6213f65
gnu: Add libseccomp. 
* gnu/packages/linux.scm (libseccomp): New variable.
 2016-10-19 13:01:31 -04:00
Marius Bakke 6de9dfce80
gnu: xapian: Update to 1.4.0. 
* gnu/packages/search.scm (xapian): Update to 1.4.0.
[source]: Use https URL.
[home-page]: Use https URL.
[arguments]: Remove 'patch-remotetcp-harness' phase. Replace 'check'
phase with a list of custom test targets.
 2016-10-19 17:00:51 +01:00
Marius Bakke 16a23d4ad2
gnu: xapian: Use 'modify-phases' syntax. 
* gnu/packages/search.scm (xapian)[arguments]: Use 'modify-phases'. Fix
'/bin/sh' substitution to use (which "sh") instead of (which "bash").
 2016-10-19 17:00:43 +01:00
Marius Bakke 6cf27c89a5
gnu: notmuch: Enable tests. 
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mail.scm (notmuch)[source]: Use patch.
[arguments]: Add verbose make flags. Add phase 'patch-notmuch-lib.el' to
fix hard-coded /bin/sh. Add 'prepare-test-environment' phase to patch
test shebangs and set environment.
[native-inputs]: Change from 'emacs-minimal' to 'emacs-no-x'. Add dtach,
gnupg, man, perl and which.
 2016-10-19 17:00:37 +01:00
Marius Bakke 540d6cc711
gnu: notmuch: Update to 0.23. 
* gnu/packages/mail.scm (notmuch): Update to 0.23.
[home-page]: Use https URL.
(python-notmuch)[version]: Inherit from notmuch.
[home-page]: Ditto.
 2016-10-19 17:00:24 +01:00
ng0 152ffe7cb6
gnu: Add opensmtpd-extras. 
* gnu/packages/mail.scm (opensmtpd-extras): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-19 17:37:16 +03:00
ng0 8b53366c63
gnu: Add opensmtpd. 
* gnu/packages/mail.scm (opensmtpd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-19 17:32:49 +03:00
ng0 71f048c624
gnu: Add libasr. 
* gnu/packages/dns.scm (libasr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-19 17:28:06 +03:00
Efraim Flashner c11933c920
gnu: zile: Use 'modify-phases' syntax. 
* gnu/packages/zile.scm (zile)[arguments]: Use 'modify-phases' syntax.
 2016-10-19 17:10:17 +03:00
Efraim Flashner fa216a4d01
gnu: zile: Update to 2.4.13. 
* gnu/packages/zile.scm (zile): Update to 2.4.13.
[home-page]: Use https.
 2016-10-19 17:10:17 +03:00
Ludovic Courtès 4534d85e70
gnu: Add Ao. 
* gnu/packages/engineering.scm (ao): New variable.
 2016-10-19 15:54:10 +02:00
Ludovic Courtès a966281f2d
gnu: glfw: Propagate the relevant inputs. 
* gnu/packages/gl.scm (glfw)[inputs]: Rename to...
[propagated-inputs]: ... this.  Add LIBXXF86VM.
 2016-10-19 15:54:10 +02:00
Ludovic Courtès 7fee5b5397
container: Allow 'container-excursion' to the same namespaces. 
Before that, 'container-excursion' would call 'setns' even when the
target namespace is the one the caller is already in, which would fail.

* gnu/build/linux-container.scm (container-excursion): Introduce
'source' and 'target'.  Compare the result of 'readlink' on these
instead of comparing file descriptors to decide whether to call
'setns'.
* tests/containers.scm ("container-excursion, same namespace"): New test.
 2016-10-19 15:54:10 +02:00
Roel Janssen 99df12cd19
gnu: Add r-biocstyle. 
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
 2016-10-19 15:22:06 +02:00
Roel Janssen 207ce8fbe5
gnu: Add r-biocviews. 
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
 2016-10-19 15:09:55 +02:00
Benz Schenk b747718e23
gnu: Add iperf. 
* gnu/packages/networking.scm (iperf): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-19 13:19:07 +01:00
Hartmut Goebel b5a5fb1927
gnu: python-dateutil, python-dateutil-2: Update to new home-page. 
* gnu/packages/python.scm (python-dateutil, python2-dateutil,
  python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
 2016-10-19 11:52:54 +02:00
Roel Janssen c79ad57a8d
gnu: Add r-optparse. 
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
 2016-10-19 10:48:56 +02:00
Roel Janssen 2acaaee550
gnu: Add r-getopt. 
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
 2016-10-19 09:55:45 +02:00
Federico Beffa 7d95c0006a
gnu: Add GHC 8.0.1. 
* gnu/packages/haskell.scm (ghc-8): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 1bd00f1737
gnu: Add ghc-hashtables. 
* gnu/packages/haskell.scm (ghc-hashtables): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa db61a00971
gnu: Add ghc-easyplot. 
* gnu/packages/haskell.scm (ghc-easyplot): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 4225c7116d
gnu: Add ghc-hmatrix-gsl-stats. 
* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 271a5365aa
gnu: Add ghc-hmatrix-special. 
* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 932104abce
gnu: Add ghc-hmatrix-gsl. 
* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 95595618b1
gnu: Add ghc-hmatrix. 
* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 725dddd7fb
gnu: Add ghc-storable-complex. 
* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa fb6d2d75f3
gnu: Add chez-fmt. 
* gnu/packages/chez.scm (chez-fmt): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 87d6c9ef8a
gnu: Add chez-irregex. 
* gnu/packages/chez.scm (chez-irregex): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 387541907f
gnu: Add chez-matchable 
* gnu/packages/chez.scm (chez-matchable): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 74f9c19092
gnu: Add chez-sockets 
* gnu/packages/chez.scm (chez-sockets): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 4dfe4eee55
gnu: Add chez-web 
* gnu/packages/chez.scm (chez-web): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa c344b85dd0
gnu: Add chez-srfi. 
* gnu/packages/chez.scm (chez-srfi): New variable.
 2016-10-19 08:44:11 +02:00
Federico Beffa 13bbc0cc94
gnu: chez-scheme: Move to new module. 
* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ...
* gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
 2016-10-19 08:44:11 +02:00
Federico Beffa f7616df4af
gnu: chez-scheme: Fix i686 build. 
* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize
  'configure' phase and simplify 'install-doc' phase.
 2016-10-19 08:44:11 +02:00
Federico Beffa 4b86dde0d6
gnu: chez-scheme: Add search-path. 
* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
 2016-10-19 08:44:11 +02:00
Christopher Allan Webber f7017a719d
build: Remove reference to nonexistant patch file. 
* gnu/local.mk: Remove reference to kobodeluxe-spelling.patch,
  which was removed during a revision to the submitted kobodeluxe package.
 2016-10-18 21:31:52 -05:00
Christopher Allan Webber 3d1fe340db
gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch. 
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing
  to Debian tarball for provenance.
 2016-10-18 20:35:01 -05:00
Leo Famulari ca121ae8d7
gnu: mariadb: Update to 10.1.18. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
 2016-10-18 21:32:11 -04:00
Leo Famulari 0cf3a7259b
gnu: mysql: Update to 5.7.16. 
* gnu/packages/databases.scm (mysql): Update to 5.7.16.
 2016-10-18 21:32:03 -04:00
Stephen Webber a56145e1fa
gnu: Add kobodeluxe. 
* gnu/packages/games.scm (kobodeluxe): New variable.
* gnu/packages/patches/kobodeluxe-paths.patch: New file.
* gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file.
* gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file.
* gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file.
* gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file.
* gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-10-18 20:23:03 -05:00
ng0 91988aee12
gnu: torsocks: Update to 2.2.0. 
* gnu/packages/patches/torsocks-dns-test.patch: Delete file.
* gnu/local.mk: Remove it.
* gnu/packages/tor.scm (torsocks): Update to 2.2.0.
[source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'.
Remove 'file-name'.
[arguments]: Remove 'bootstrap' phase.
[native-inputs]: Remove autoconf, automake and libtool. Also remove
obsoleted perl-test-harness.
[home-page]: Use https URL.
(define-module): Don't import perl.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-18 23:45:06 +01:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures. 
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-18 21:15:43 +02:00
Efraim Flashner 1dc30f9232
gnu: enlightenment: Update to 0.21.3. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
 2016-10-18 08:57:54 +03:00
Efraim Flashner 00bfd498f9
gnu: tor: Update to 0.2.8.9. 
* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
 2016-10-18 00:25:30 +03:00
Efraim Flashner a31ac11385
gnu: vapoursynth: Update to 34. 
* gnu/packages/video.scm (vapoursynth): Update to 34.
 2016-10-18 00:08:09 +03:00
Efraim Flashner 8ee04627d8
gnu: zimg: Update to 2.3. 
* gnu/packages/image.scm (zimg): Update to 2.3.
 2016-10-18 00:07:20 +03:00
Efraim Flashner b333d00c35
gnu: jasper: Update to 1.900.5. 
* gnu/packages/image.scm (jasper): Update to 1.900.5.
[source]: Remove patches.
[native-inputs]: Remove unzip.
* gnu/packages/patches/jasper-CVE-2007-2721.patch,
gnu/packages/patches/jasper-CVE-2008-3520.patch,
gnu/packages/patches/jasper-CVE-2008-3522.patch,
gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch,
gnu/packages/patches/jasper-CVE-2014-8137.patch,
gnu/packages/patches/jasper-CVE-2014-8138.patch,
gnu/packages/patches/jasper-CVE-2014-8157.patch,
gnu/packages/patches/jasper-CVE-2014-8158.patch,
gnu/packages/patches/jasper-CVE-2014-9029.patch,
gnu/packages/patches/jasper-CVE-2016-1577.patch,
gnu/packages/patches/jasper-CVE-2016-1867.patch,
gnu/packages/patches/jasper-CVE-2016-2089.patch,
gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-10-17 23:51:38 +03:00
Leo Famulari 6ace9f80f1
gnu: diffoscope: Update to 61. 
* gnu/packages/package-management.scm (diffoscope): Update to 61.
 2016-10-17 16:39:46 -04:00
John Darrington 040b6299d5
gnu: openssh: Enable kerberos features. 
* gnu/packages/ssh.scm (openssh) [arguments]: Add flag --with-kerberos5.
[inputs]: Add mit-krb5.
 2016-10-17 21:52:53 +02:00
Mark H Weaver cd829fe306
gnu: linux-libre: Update to 4.8.2. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.2.
 2016-10-17 15:23:46 -04:00
Mark H Weaver 43f1d02ddc
gnu: linux-libre@4.4: Update to 4.4.25. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.25.
 2016-10-17 15:22:33 -04:00
Rene Saavedra 0bd697591b
gnu: Add xpad. 
* gnu/packages/gnome.scm (xpad): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2016-10-17 15:09:31 -04:00
Ricardo Wurmus 5093729704
gnu: Add rcas-web. 
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
 2016-10-17 18:09:20 +02:00
Ricardo Wurmus 89984be46e
gnu: Add r-rcas. 
* gnu/packages/bioinformatics.scm (r-rcas): New variable.
 2016-10-17 18:09:16 +02:00
Ricardo Wurmus f90b2dbdb7
gnu: irrlicht: Update to 1.8.4. 
* gnu/packages/games.scm (irrlicht): Update to 1.8.4.
[arguments]: Delete phase "apply-patch/mesa-10-fix".
[native-inputs]: Remove "patch/mesa-10-fix".
* gnu/packages/patches/irrlicht-mesa-10.patch: Delete file.
* gnu/local.mk (dist_path_DATA): Remove irrlicht patch.
 2016-10-17 17:11:51 +02:00
Ricardo Wurmus b8a35ccea6
gnu: extremetuxracer: Update to 0.7.3. 
* gnu/packages/games.scm (extremetuxracer): Update to 0.7.3.
[inputs]: Remove freetype, mesa, libice, libpng, sdl, sdl-mixer,
sdl-image, libsm, libunwind, libx11, libext, libxi, libxmu, libxt, tcl,
zlib; add sfml.
[arguments]: Remove field.
 2016-10-17 17:11:43 +02:00
Ricardo Wurmus a6e25a50f9
gnu: sfml: Install pkgconfig files. 
* gnu/packages/game-development.scm (sfml)[arguments]: Add configure
flag to install pkgconfig files.
 2016-10-17 17:11:37 +02:00
Adonay Felipe Nogueira 8a666bc5cb
gnu: artanis: Remove implied $(DESTDIR) usage. 
* gnu/packages/patches/artanis-fix-Makefile.in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/guile.scm (artanis)[source]: Use patch.
[arguments]: Remove DESTDIR from #:make-flags.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-17 15:20:11 +01:00
Al McElrath dd04f56a2b
gnu: node: Update to 6.8.0. 
Remove <https://debbugs.gnu.org/23744> and
<https://debbugs.gnu.org/23723> workaround.

* gnu/packages/node.scm (node): Update to 6.8.0.
  (node)[arguments]: Disabled more tests. Remove custom 'patch-shebangs'
  phase. Manually patch npm script shebang in new 'patch-npm-shebang'
  phase.
* gnu/packages/patches/node-9077.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-17 11:55:49 +02:00
Ben Woodcroft a8de0d1ec4
gnu: ruby-json-pure: Fix tests. 
* gnu/packages/ruby.scm (ruby-json-pure)[arguments]: Remove unneeded
reference to 'json-java.gemspec' in 'Gemfile'.
 2016-10-17 19:17:53 +10:00
Ben Woodcroft b8004a7b79
gnu: bundler: Update to 1.13.5. 
* gnu/packages/ruby.scm (bundler): Update to 1.13.5.
 2016-10-17 19:17:52 +10:00
Hartmut Goebel cb0866c325
gnu: Add geierlein. 
* gnu/packages/finance.scm (geierlein): New variable.
 2016-10-17 10:39:21 +02:00
Tobias Geerinckx-Rice 4fb5f83099
gnu: Add sslh. 
* gnu/packages/networking.scm (sslh): New variable.
 2016-10-17 02:02:15 +02:00
Tobias Geerinckx-Rice 2f96872727
gnu: httping: Update to 2.5. 
* gnu/packages/networking.scm (httping): Update to 2.5.
 2016-10-17 02:02:15 +02:00
Julien Lepiller f3e222165e
gnu: Add fbida. 
* gnu/packages/pdf.scm (fbida): New variable.
 2016-10-16 14:00:18 -04:00
Andreas Enge 60da9fb110
gnu: hdf4: Fix non-x86 architectures. 
* gnu/packages/patches/hdf4-architectures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-16 17:00:56 +02:00
Leo Famulari f349d36e48
gnu: certbot, python-acme: Update to 0.9.3. 
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.9.3.
[source]: Use pypi-uri.
(python-acme, python2-acme): Update to 0.9.3.
[source]: Use pypi-uri.
 2016-10-16 09:26:36 -04:00
Leo Famulari 6c514128ec
gnu: python-dnspython: Update to 0.15.0. 
* gnu/packages/python.scm (python-dnspython, python2-dnspython): Update
to 0.15.0.
 2016-10-16 09:26:35 -04:00
Leo Famulari 0580e383c2
gnu: python-werkzeug: Update to 0.11.11. 
* gnu/packages/python.scm (python-werkzeug, python2-werkzeug):
Update to 0.11.11.
 2016-10-16 09:26:35 -04:00
Leo Famulari eb68d2685a
gnu: python-pyopenssl: Update to 16.1.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update
to 16.1.0
[source]: Use pypi-uri.
 2016-10-16 09:26:35 -04:00
Leo Famulari caa0edb36c
gnu: python-pyasn1: Update to 0.1.9. 
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.1.9.
[source]: Use pypi-uri.
 2016-10-16 09:26:29 -04:00
Ricardo Wurmus b7afd01893
gnu: Add python-whoosh. 
* gnu/packages/python.scm (python-whoosh, python2-whoosh): New variables.
 2016-10-16 12:55:43 +02:00
Theodoros Foradis 569f601649
gnu: Add arm-none-eabi-toolchain variants. 
* gnu/packages/embedded.scm (arm-none-eabi-toolchain): New procedure.
(arm-none-eabi-toolchain-4.9, arm-none-eabi-nano-toolchain-4.9,
arm-none-eabi-toolchain-6, arm-none-eabi-nano-toolchain-6): New
variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-10-16 11:53:11 +02:00
Theodoros Foradis dbc3c34ea0
gnu: Add arm-none-eabi-gcc-6. 
* gnu/packages/embedded.scm (gcc-arm-none-eabi-6): New variable.
* gnu/packages/patches/gcc-6-arm-none-eabi-multilib.patch: New file.
* gnu/packages/patches/gcc-6-cross-environment-variables.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patches.
 2016-10-16 11:53:07 +02:00
Leo Famulari f4a4b854e0
gnu: youtube-dl: Update to 2016-10-16. 
* gnu/packages/video.scm (youtube-dl): Update to 2016-10-16.
 2016-10-15 21:11:42 -04:00
Andy Patterson fcb9b9340f
gnu: dbus-1.10.12: Fix search paths. 
Add the patches from dbus's source field back into its replacement. This ensures
that the grafted dbus package can find its services on GuixSD.

This is a follow-up to commit 34f9582aad.

* gnu/packages/glib.scm (dbus-1.10.12)[source]: Inherit from dbus.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-10-15 18:13:58 -04:00
Efraim Flashner 5f01e1bbc6
gnu: assimp: Update to 3.3.1. 
* gnu/packages/graphics.scm (assimp): Update to 3.3.1.
[native-inputs]: Remove unzip.
 2016-10-15 23:22:47 +03:00
Efraim Flashner 608bf1d38b
gnu: jsoncpp: Update to 1.7.7. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.7.7.
 2016-10-15 23:22:46 +03:00
Efraim Flashner 43593f5bc4
gnu: cereal: Update to 1.2.1. 
* gnu/packages/serialization.scm (cereal): Update to 1.2.1.
 2016-10-15 23:22:46 +03:00
Efraim Flashner d0cddec230
gnu: picocom: Update to 2.2. 
* gnu/packages/terminals.scm (picocom): Update to 2.2.
 2016-10-15 23:22:46 +03:00
Efraim Flashner 66bb5db7ab
gnu: termite: Use 'modify-phases' syntax. 
* gnu/packages/terminals.scm (termite)[arguments]: Use 'modify-phases'
syntax.
 2016-10-15 23:22:45 +03:00
Efraim Flashner ebe3515f78
gnu: termite: Update to 12. 
* gnu/packages/terminals.scm (termite): Update to 12.
 2016-10-15 23:22:45 +03:00
Efraim Flashner 9bf160a3d0
gnu: libgit2: Update to 0.24.2. 
* gnu/packages/version-control.scm (libgit2): Update to 0.24.2.
[home-page]: Use https.
 2016-10-15 23:22:45 +03:00
Efraim Flashner c2a3b23fba
gnu: abcde: Update to 2.7.2. 
* gnu/packages/cdrom.scm (abcde): Update to 2.7.2.
[arguments]: Correct sysconfdir location.
 2016-10-15 23:22:44 +03:00
Efraim Flashner 2e36f7e6b2
gnu: qt: Update to 5.6.2. 
* gnu/packages/qt.scm (qt): Update to 5.6.2.
[home-page]: Update to new home-page.
 2016-10-15 23:22:33 +03:00