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Author SHA1 Message Date
Zheng Junjie
c0bfa12666
gnu: uncrustify: use new style and gexp. 
* gnu/packages/code.scm (uncrustify): use new style and gexp.
[native-inputs]: remove label.
[arguments]: use gexp and remove tail #t.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 22:58:59 +02:00
Zheng Junjie
ca5fae4f26
gnu: uncrustify: Update to 0.77.1. 
* gnu/packages/code.scm (uncrustify): Update to 0.77.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 22:58:57 +02:00
Zheng Junjie
258729b928
gnu: makefile2graph: fix cross-compile. 
* gnu/packages/code.scm (makefile2graph): fix cross-compile.
[arguments]: Use gexp and CC-FOR-TARGET.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 22:58:25 +02:00
Lars Bilke
55da0930e3
gnu: openmpi: Enable PMIx. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass “--with-pmix=internal”.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 22:55:25 +02:00
Ludovic Courtès
6d12c16299
doc: Make “crash course” xref more visible. 
* doc/guix.texi (Using the Configuration System): Move the “Do not
panic” note right after the first example.  Clarify wording.
 2023-09-14 17:18:09 +02:00
Zheng Junjie
62e1387065
gnu: npiet: Use gexps. 
* gnu/packages/piet.scm (npiet): Use Gexp.
[arguments]: Use Gexp and remove tail #t.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 17:03:54 +02:00
Zheng Junjie
40a76a7750
gnu: npiet: Fix cross-compilation. 
* gnu/packages/piet.scm (npiet)[arguments]<#:phases>: Use
SEARCH-INPUT-FILE replace WHICH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 17:03:18 +02:00
Skyler
9aeb9e7cc8
gnu: rottlog: Add gawk as an input. 
This avoids an issue where rottlog will delete the entire /tmp directory
if gawk is not installed.  See <https://issues.guix.gnu.org/65793>.

* gnu/packages/admin.scm (rottlog): Add gawk input, also update the
patch-paths build phase for awk invocations.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 16:50:40 +02:00
Zheng Junjie
6c72db7314
gnu: neofetch: Fix cross-compiling. 
* gnu/packages/admin.scm (neofetch): Fix cross-compiling.
[arguments]: Use Gexp.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 16:47:46 +02:00
fanquake
de64e412f3
gnu: tor: Update to 0.4.8.5. 
* gnu/packages/tor.scm (tor): Update to 0.4.8.5.
* gnu/packages/tor.scm (tor)[arguments]<#:configure-flags>:
Add "--enable-gpl".
* gnu/packages/patches/tor-remove-defensive-assert.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/tor.scm (tor)[source]: Add patch to remove defensive
  assert.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 16:39:20 +02:00
Timotej Lazar
08e8c3483f
gnu: syncthing: Update to 1.23.7. 
The uraggregate binary was merged into ursrv, so don’t attempt to install it.

* gnu/packages/syncthing.scm (syncthing): Update to 1.23.7.
[arguments]: Build with go-1.20.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 16:13:49 +02:00
Ramin Honary
e645a53d87
gnu: Add stklos. 
* gnu/packages/scheme.scm (stklos): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 16:12:28 +02:00
Kjartan Oli Agustsson
2643fa3513
home: services: redshift: Use redshift package specified in configuration 
* gnu/home/services/desktop.scm (redshift-shepherd-service): Use the redshift
package specified by config.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-09-14 15:53:23 +02:00
c4droid
e5f7c14ef6
gnu: python-requests_ntlm: Update to 1.2.0. 
* gnu/packages/python-web.scm (python-requests_ntlm): Update to 1.2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-09-14 12:58:17 +03:00
Ricardo Wurmus
c36d4760c6
gnu: perl-cworld-dekker: Drop labels from inputs. 
* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use
G-expression and avoid references to labeled inputs.
[inputs]: Drop labels.
 2023-09-14 11:17:48 +02:00
Efraim Flashner
0ce57ea4a1
gnu: dpkg: Update to 1.22.0. 
* gnu/packages/debian.scm (dpkg): Update to 1.22.0.
[arguments]: Wrap another script in the custom 'wrap-scripts phase.
 2023-09-14 11:37:36 +03:00
Efraim Flashner
6226b8f72d
gnu: debootstrap: Hardcode location of archive keyrings. 
* gnu/packages/debian.scm (debootstrap)[arguments]: Adjust custom
'patch-source phase to hardcode the location of the archive keyrings.
 2023-09-14 11:37:36 +03:00
Efraim Flashner
180502f28f
gnu: debootstrap: Update to 1.0.132. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.132.
 2023-09-14 11:37:36 +03:00
Ricardo Wurmus
cf5cb0875b
gnu: r-delayedmatrixstats: Update to 1.22.6. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.6.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
c8e7ea8a8b
gnu: r-rhdf5lib: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.22.1.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
ebaf944cdd
gnu: r-s4arrays: Update to 1.0.6. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.6.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
9232ef7986
gnu: r-clusterprofiler: Update to 4.8.3. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.3.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
8cfd6e804a
gnu: r-greylistchip: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.1.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
8fe9e14917
gnu: r-tcgautils: Update to 1.20.4. 
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.20.4.
[propagated-inputs]: Add r-biocbaseutils.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
7f983fb730
gnu: r-shinymethyl: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.1.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
a1245f559d
gnu: r-genomicdatacommons: Update to 1.24.3. 
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.24.3.
[propagated-inputs]: Add r-tidyr.
 2023-09-14 08:57:24 +02:00
Ricardo Wurmus
6e06c0032c
gnu: r-genomeinfodb: Update to 1.36.3. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.3.
 2023-09-14 08:57:24 +02:00
Julien Lepiller
028ebb8edb
gnu: libwebp: Replace with 1.3.2. [fixes CVE-2023-4863] 
* gnu/packages/image.scm (libwebp/fixed): Update to 1.3.2.
 2023-09-14 06:54:28 +02:00
Ricardo Wurmus
2afa9353a0
gnu: r-reghelper: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-reghelper): Update to 1.1.2.
[propagated-inputs]: Add r-rlang.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
3d402fbf1d
gnu: r-desctools: Update to 0.99.50. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.50.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
97e5c897c4
gnu: r-lmom: Update to 3.0. 
* gnu/packages/statistics.scm (r-lmom): Update to 3.0.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
fd1d1e11a2
gnu: r-deoptimr: Update to 1.1-2. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-2.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
894c89b1d8
gnu: r-rematch: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-rematch): Update to 2.0.0.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
fcf5c595e2
gnu: r-rcpparmadillo: Update to 0.12.6.4.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.4.0.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
800aab705c
gnu: r-dplyr: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.3.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
44dfcc013a
gnu: r-knitr: Update to 1.44. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.44.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
8f68be3264
gnu: r-labeling: Update to 0.4.3. 
* gnu/packages/statistics.scm (r-labeling): Update to 0.4.3.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
1a7612a64c
gnu: r-foreign: Update to 0.8-85. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-85.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
b832880b1e
gnu: r-ggh4x: Update to 0.2.6. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.6.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
772f00b171
gnu: r-mlearning: Update to 1.2.1. 
* gnu/packages/cran.scm (r-mlearning): Update to 1.2.1.
[propagated-inputs]: Add r-rpart.
 2023-09-14 00:04:16 +02:00
Ricardo Wurmus
b2610240c4
gnu: r-paws-compute: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-compute): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
c165a1fa9b
gnu: r-paws-storage: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-storage): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
30bd163d01
gnu: r-paws-database: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-database): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
2e8126e3ba
gnu: r-paws-networking: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-networking): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
98c8da964f
gnu: r-paws-management: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-management): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
9497c4dbff
gnu: r-paws-machine-learning: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
ba2fa58be0
gnu: r-paws-analytics: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
6e8f6654d7
gnu: r-paws-security-identity: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-security-identity): Update to 0.4.0.
 2023-09-14 00:04:15 +02:00
Ricardo Wurmus
90aa4f2afe
gnu: r-paws-application-integration: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.4.0.
 2023-09-14 00:04:14 +02:00
Ricardo Wurmus
4052f7d113
gnu: r-paws-end-user-computing: Update to 0.4.0. 
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.4.0.
 2023-09-14 00:04:14 +02:00