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Author SHA1 Message Date
Ludovic Courtès bf6859e45a
gnu: libbytesize: Make .mo file builds reproducible. 
* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New
fields.
[arguments]: Add #:configure-flags and #:phases.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès e555bbfc48
gnu: emacs-pdf-tools: Fix build with recent Poppler. 
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file.
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès c3d8c6ac7e
gnu: emacs-pdf-tools: Use 'git-fetch'. 
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to
GIT-FETCH.
[arguments]: In 'emacs-patch-variables' phase, make files writable.
 2018-11-21 17:38:00 +01:00
Ludovic Courtès e1f7912761
gnu: casync: Fix build with glibc 2.28. 
* gnu/packages/patches/casync-renameat2-declaration.patch: New file.
* gnu/packages/sync.scm (casync)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-11-21 17:38:00 +01:00
Efraim Flashner 4cf879fefb
gnu: ntk: Don't use bundled waf. 
* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf.
[arguments]: Add custom phase to replace vendored waf.
 2018-11-21 15:43:23 +02:00
Efraim Flashner 24a2e19c43
gnu: python-waf: Use a proper directory structure. 
Fixes <https://bugs.gnu.org/25634>.

* gnu/packages/python.scm (python-waf): Replace custom 'install phase to
install "waf" binary into the bin directory. Remove the 'wrap phase.
* gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase
accordingly.
 2018-11-21 15:43:23 +02:00
Efraim Flashner 4e94cdb652
gnu: python-astroid: Update to 2.0.4. 
* gnu/packages/python.scm (python-astroid): Update to 2.0.4.
[source]: Switch to pypi source.
[native-inputs]: Add python-dateutil, python-nose, python-pytest,
python-pytest-runner.
[arguments]: Add phase to remove spurious test failure. Update custom
'check phase.
(python2-astroid): Update to 1.6.5.
[source]: Use pypi source.
[arguments]: Add phase to remove spurious test failure.
 2018-11-21 12:00:01 +02:00
Marius Bakke 4f70db97a0
Merge branch 'master' into core-updates 2018-11-20 01:14:12 +01:00
Marius Bakke 9acfe275ad
gnu: Add missing patch to local.mk. 
This line was removed by accident in 0a41123f01.

* gnu/local.mk (dist_patch_DATA): Add "clang-3.5-libc-search-path.patch".
 2018-11-20 01:11:26 +01:00
Marius Bakke 30f0feff19
gnu: libwebp: Update to 1.0.1. 
* gnu/packages/image.scm (libwebp): Update to 1.0.1.
 2018-11-20 00:57:49 +01:00
Marius Bakke 7882cc55bc
gnu: fluidsynth: Update to 2.0.2. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.2.
 2018-11-20 00:57:49 +01:00
Marius Bakke 352401efb8
gnu: python-joblib: Update home page. 
* gnu/packages/python.scm (python-joblib)[home-page]: Update to current.
 2018-11-20 00:57:49 +01:00
Marius Bakke ff43d95807
gnu: python-joblib: Update to 0.13.0. 
* gnu/packages/python.scm (python-joblib): Update to 0.13.0.
[source](snippet): Remove.
[arguments]: Remove 'disable-failing-tests' phase.  Add custom check phase.
[native-inputs]: Remove PYTHON-NOSE, PYTHON-SPHINX, PYTHON-DOCUTILS and
PYTHON-NUMPYDOC.  Add PYTHON-PYTEST.
 2018-11-20 00:57:49 +01:00
Marius Bakke 89d88b8530
gnu: python-natsort: Update to 5.4.1. 
* gnu/packages/python.scm (python-natsort): Update to 5.4.1.
[arguments]: Add #:modules.  Replace 'check' phase with custom pytest
invokation.
[native-inputs]: Remove PYTHON-PYTEST-CACHE, PYTHON-PYTEST-FLAKES and
PYTHON-PYTEST-PEP8.  Add PYTHON-PYTEST and PYTHON-PYTEST-MOCK.
(python2-natsort)[native-inputs]: Remove PYTHON2-ENUM34 and PYTHON2-MOCK.
 2018-11-20 00:57:48 +01:00
Marius Bakke 4a4f3e771b
gnu: z3: Update to 4.8.1. 
* gnu/packages/maths.scm (z3): Update to 4.8.1.
 2018-11-20 00:57:48 +01:00
Marius Bakke fb525bfd83
gnu: z3: Fetch source using git. 
* gnu/packages/maths.scm (z3)[source]: Change to GIT-FETCH.
 2018-11-20 00:57:48 +01:00
Pkill -9 cc661cb348
gnu: xonotic: Symlink to xonotic data instead of copying into xonotic. 
* gnu/packages/games.scm (xonotic)[arguments]: Modify the phase
'install-data so it creates a symlink to xonotic's data instead of
copying it into the xonotic package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-19 23:11:38 +01:00
Thorsten Wilms c3276dbecb
gnu: Add autotalent. 
* gnu/packages/audio.scm (autotalent): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-19 23:11:38 +01:00
Ludovic Courtès 887437ee0e
gnu: git-when-merged: Fix license. 
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/version-control.scm (git-when-merged)[license]: Change to
GPL2+.
 2018-11-19 23:11:38 +01:00
Roel Janssen 4db71841ee
gnu: r-shinyfiles: Update to 0.7.2. 
* gnu/packages/web.scm (r-shinyfiles): Update to 0.7.2.
 2018-11-19 17:20:05 +01:00
Roel Janssen 0adf04a2d3
gnu: r-mclust: Update to 5.4.2. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.2.
 2018-11-19 17:19:44 +01:00
Roel Janssen 185663e568
gnu: r-openssl: Update to 1.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.1.
 2018-11-19 17:19:15 +01:00
Roel Janssen 749872a5ed
gnu: r-biocmanager: Update to 1.30.4. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.4.
 2018-11-19 17:18:41 +01:00
Roel Janssen 278e0f6506
gnu: r-ggeffects: Update to 0.7.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.7.0.
 2018-11-19 17:18:19 +01:00
Roel Janssen fba7dbe76c
gnu: r-sjstats: Update to 0.17.2. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.2.
 2018-11-19 17:17:54 +01:00
Roel Janssen 1659c5dd27
gnu: r-ggpubr: Update to 0.2. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.
 2018-11-19 17:17:25 +01:00
Roel Janssen e396b37822
gnu: r-recipes: Update to 0.1.4. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.4.
 2018-11-19 17:17:03 +01:00
Roel Janssen e21659c70b
gnu: r-dimred: Update to 0.2.2. 
* gnu/packages/cran.scm (r-dimred): Update to 0.2.2.
 2018-11-19 17:16:35 +01:00
Roel Janssen c2e26dc156
gnu: r-ensembldb: Update to 2.6.2. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.2.
 2018-11-19 16:46:32 +01:00
Roel Janssen e038819138
gnu: r-msnbase: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.1.
 2018-11-19 16:46:00 +01:00
Roel Janssen 4535a7b0f5
gnu: r-genomeinfodb: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.1.
 2018-11-19 16:33:35 +01:00
Alex Vong 5497214d80
gnu: Add clojure-algo-monads. 
* gnu/packages/lisp.scm (clojure-algo-monads): New public variable.
 2018-11-19 12:10:06 +01:00
Alex Vong 2cab1d4a7d
gnu: Add clojure-tools-macro. 
* gnu/packages/lisp.scm (clojure-tools-macro): New public variable.
 2018-11-19 12:09:53 +01:00
Alex Vong eea5530c9f
gnu: Add clojure-algo-generic. 
* gnu/packages/lisp.scm (clojure-algo-generic): New public variable.
 2018-11-19 12:09:39 +01:00
Alex Vong c784ffa0c4
gnu: Add clojure-core-match. 
* gnu/packages/lisp.scm (clojure-core-match): New public variable.
 2018-11-19 12:09:15 +01:00
Alex Vong d2a659e5bf
gnu: Add clojure-instaparse. 
* gnu/packages/lisp.scm (clojure-instaparse): New public variable.
 2018-11-19 12:08:26 +01:00
Alex Vong df730f6757
build-system: Add 'clojure-build-system'. 
* guix/build-system/clojure.scm, guix/build/clojure-build-system.scm: New
files.
* guix/build/clojure-utils.scm (@*, @@*): New macros.
(%source-dirs, %test-dirs, %compile-dir, %main-class, %omit-source?,
%aot-include, %aot-exclude, %tests?, %test-include, %test-exclude,
%clojure-regex): New variables.
(package-name->jar-names, canonicalize-relative-path, find-files*,
file-sans-extension, relative-path->clojure-lib-string, find-clojure-libs,
compiled-from?, include-list\exclude-list, eval-with-clojure, create-jar):
New procedures.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document 'clojure-build-system'.
 2018-11-19 12:07:44 +01:00
Alex Vong 53f316ab90
guix: Add clojure-utils. 
* guix/build/clojure-utils.scm: New file.
* gnu/packages/lisp.scm (clojure)[arguments]: Use it.
* Makefile.am (MODULES): Add it.
 2018-11-19 12:05:19 +01:00
Alex Vong d0ad97115a
gnu: clojure: Use (guix build java-utils) to simplify build phases. 
* gnu/packages/lisp.scm (clojure)[arguments]: Use 'ant-build-javadoc',
'install-jars' and 'install-javadoc' in build phases.
 2018-11-19 12:02:26 +01:00
Alex Vong 8da9187a5a
gnu: clojure: Refactor to ensure there's a single list of libraries. 
This avoids having to update multiple lists.

* gnu/packages/lisp.scm (clojure)[native-inputs]: Use new local variable.
[arguments]: Adjust build phases accordingly.
 2018-11-19 12:02:09 +01:00
Alex Vong df0a180421
gnu: clojure: Remove 'remove-archives' snippet. 
This is no longer needed since clojure now makes official source releases
in github.

* gnu/packages/lisp.scm (clojure)[source]: Remove it.
[native-inputs]: Remove it in 'submodule'.
[arguments]: Adjust 'unpack-submodule-sources' phase accordingly.
 2018-11-19 12:01:48 +01:00
Alex Vong 28e32b14e4
gnu: clojure: Move from java to lisp. 
* gnu/packages/java.scm (clojure): Move from here...
* gnu/packages/lisp.scm (clojure): ...to here.
 2018-11-19 12:01:25 +01:00
Jovany Leandro G.C f4ee41c960
gnu: python-kivy: Update to 1.10.1 
* gnu/packages/python.scm (python-kivy): Update to 1.10.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-19 09:59:08 +01:00
Ludovic Courtès 5e9ce98af7
gnu: help2man: Add 1.47.8. 
* gnu/packages/man.scm (help2man/latest): New variable.
 2018-11-19 09:59:08 +01:00
Ludovic Courtès 1372754dc0
gnu: fuse-exfat: Update to 1.3.0. 
* gnu/packages/linux.scm (fuse-exfat): Update to 1.3.0.
 2018-11-19 09:59:08 +01:00
Ludovic Courtès c39f3e1c43
gnu: diffoscope: Update to 105. 
* gnu/packages/package-management.scm (diffoscope): Update to 105.
 2018-11-19 09:59:07 +01:00
Ludovic Courtès 1d6669afef
guix system: Fix 'init'. 
Fixes a regression introduced in
52ee4479ef, whereby 'install' would now be
passed a <computed-file> object instead of a derivation.

* guix/scripts/system.scm (install): Call 'lower-object' on BOOTCFG.
 2018-11-19 09:59:07 +01:00
Leo Famulari 5c40a69f71
gnu: Add libfdk 'FDK AAC' library. 
* gnu/packages/audio.scm (libfdk): New variable.
 2018-11-18 18:19:34 -05:00
Ludovic Courtès ab6caf4f1d
guix system: Clarify 'perform-action'. 
* guix/scripts/system.scm (perform-action): Move non-monadic local
variables outside the 'mlet' form.
 2018-11-18 23:37:45 +01:00
Ludovic Courtès 52ee4479ef
guix system: De-monadify bootloader installation script. 
* guix/scripts/system.scm (bootloader-installer-derivation): Rename
to...
(bootloader-installer-script): ... this.  Use 'scheme-file' instead of
'gexp->file'.
(perform-action): Adjust accordingly.  Move 'lower-object' call to the
point where DRVS is computed.
 2018-11-18 23:37:45 +01:00