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77253 commits

Author SHA1 Message Date
Maxim Cournoyer bf1628038c
guix-install.sh: Ensure GUIX_BINARY_FILE_NAME is an absolute path.
This is necessary as the directory context is changed in the script, breaking
the use of a relative path.

* etc/guix-install.sh (main) <GUIX_BINARY_FILE_NAME>: Resolve its absolute
path via the 'realpath' command.
2021-05-01 01:23:08 -04:00
Maxim Cournoyer 38aab0ea8b
guix-install.sh: Allow overriding the Guix binary source.
This is useful for example for testing release candidates not yet uploaded to
the FTP, or for testing manually downloaded images from the CI.

* etc/guix-install.sh (main)[GUIX_BINARY_FILE_NAME]: When this variable is
defined, use it as the file name of a Guix binary, instead of automatically
retrieving the latest archive from the FTP.
2021-05-01 01:23:02 -04:00
Nicolas Goaziou 73b6660cd1
gnu: emacs-marginalia: Update to 0.5.
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.5.
2021-04-30 21:11:57 +02:00
Nicolas Goaziou fc2df097f3
gnu: emacs-consult: Update to 0.7.
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.7.
2021-04-30 21:11:27 +02:00
Oleg Pykhalov 3036bbe1c8
gnu: emacs-which-key: Update to 3.5.2.
* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.2.
2021-04-30 20:46:38 +03:00
Roel Janssen f09e4dd8ea
gnu: Add pbgzip.
* gnu/packages/bioinformatics.scm (pbgzip): New variable.
2021-04-30 18:44:46 +02:00
Ludovic Courtès 5866fa558b
Merge branch 'wip-ungrafting' 2021-04-30 18:21:31 +02:00
Brendan Tildesley ed9d890e0e
gnu: xfce4-settings: Add gsettings-desktop-schemas.
* gnu/packages/xfce.scm (xfce4-settings):[propagated-inputs]: Add
gsettings-desktop-schemas. This makes it appear in the system profile
via the xfce service. This fixes a bug where changing icon theme causes
xfce4-appearance-settings to crash with the error:

GLib-GIO-ERROR **: 15:41:45.828: Settings schema 'org.gnome.desktop.interface' is not installed
Trace/breakpoint trap

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-30 17:37:45 +02:00
Xinglu Chen 953e7d84ce
gnu: emacs-xref: Fix ELPA URL.
* gnu/packages/emacs-xyz.scm (emacs-xref)[source]: Use “.tar” instead of “.el”
in the URL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-04-30 16:47:31 +02:00
Raghav Gururajan ee86a035c7
gnu: libsoup: Update home-page.
* gnu/packages/gnome.scm (libsoup)[home-page]: Modify.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-30 16:12:41 +02:00
Raghav Gururajan 2fd6484ad3
gnu: libsoup: Adjust inputs.
* gnu/packages/gnome.scm (libsoup)[inputs]: Add samba and
move glib-networking to ...
[propagated-inputs]: ... here.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-30 16:12:41 +02:00
Nicolas Goaziou d5fdd88739
gnu: emacs-xref: Update to 1.1.0.
* gnu/packages/emacs-xyz.scm (emacs-xref): Update to 1.1.0.
2021-04-30 16:01:55 +02:00
Nicolas Goaziou d3bed700a2
gnu: emacs-tramp: Update to 2.5.0.4.
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0.4.
2021-04-30 16:01:46 +02:00
Nicolas Goaziou 2130a43874
gnu: emacs-auctex: Update to 13.0.11.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.11.
2021-04-30 16:01:39 +02:00
Nicolas Goaziou 5511a5b662
gnu: emacs-project: Update to 0.6.0.
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.6.0.
2021-04-30 16:01:30 +02:00
Sergiu Ivanov 847f523381
gnu: Add aspell-dict-ro.
* gnu/packages/aspell.scm (aspell-dict-ro): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-04-30 12:51:40 +02:00
Sharlatan Hellseher 91ba42509e
gnu: Add cl-bknr-datastore.
* gnu/packages/lisp-xyz.scm (cl-bknr-datastore, sbcl-bknr-datastore): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-04-30 09:42:07 +02:00
Sharlatan Hellseher c72c3e50cd
gnu: Add cl-unit-test.
* gnu/packages/lisp-xyz.scm (cl-unit-test, ecl-unit-test, sbcl-unit-test): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-04-30 09:16:22 +02:00
Efraim Flashner 131265ea3a
gnu: vim-fugitive: Update to 3.3.
* gnu/packages/vim.scm (vim-fugitive): Update to 3.3.
2021-04-29 23:22:48 +03:00
Efraim Flashner 59dbf6e190
gnu: vim-asyncrun: Update to 2.8.6.
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.8.6.
2021-04-29 23:19:48 +03:00
Oleg Pykhalov ed1e011dd5
gnu: emacs-elfeed: Update to 3.4.1.
* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.4.1.
2021-04-29 21:02:13 +03:00
Efraim Flashner bdf9c7db6d
gnu: nano: Update to 5.7.
* gnu/packages/nano.scm (nano): Update to 5.7.
2021-04-29 20:53:13 +03:00
Timothy Sample fbc2a52a32
download: Use Disarchive as a last resort.
This is a fixed version of 66b14dccdd,
which was reverted in e74250c3c5.

* guix/download.scm (%disarchive-mirrors): New variable.
(%disarchive-mirror-file): New variable.
(built-in-download): Add 'disarchive-mirrors' keyword argument and
pass its value along to the 'builtin:download' derivation.
(url-fetch): Pass '%disarchive-mirror-file' to 'built-in-download'.
* guix/scripts/perform-download.scm (perform-download): Read
Disarchive mirrors from the environment and pass them to
'url-fetch'.
* guix/build/download.scm (disarchive-fetch/any): New procedure.
(url-fetch): Add 'disarchive-mirrors' keyword argument, use it to
make a list of URIs, and use the new procedure to fetch the file if
all other methods fail.
* build-aux/build-self.scm (build-program)[select?]: Exclude '(guix
build download)'.
* guix/self.scm (compiled-guix)[*core-modules*]: Add 'guile-json' to
the list of extensions.
2021-04-29 11:24:48 -04:00
Andreas Enge df0b723345
gnu: mpfrcx: Update to 0.6.1.
* gnu/packages/algebra.scm (mpfrcx): Update to 0.6.1.
2021-04-29 15:44:15 +02:00
Ludovic Courtès 2c11e7be74
Merge remote-tracking branch 'origin/master' into wip-ungrafting 2021-04-29 15:41:48 +02:00
Guillaume Le Vaillant 041d62f7cc
gnu: bigloo: Update to 4.3g.
* gnu/packages/scheme.scm (bigloo): Update to 4.3g.
  [source]: Remove bundled libunistring and pcre.
  [arguments]: Add 'fix-gmp-detection' phase. Add options to 'configure' phase
  to throw an error when gmp is not found.
2021-04-29 14:57:15 +02:00
Roel Janssen 7540f6915c
gnu: Update bedtools to 2.30.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.30.0,
  [inputs]: Use latest samtools.
2021-04-29 12:14:06 +02:00
Roel Janssen 558d11c3a8
gnu: Update samtools to 1.12.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.12.
2021-04-29 12:14:02 +02:00
Roel Janssen b904bb89a0
gnu: Update bcftools to 1.12.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.12.
2021-04-29 12:13:56 +02:00
Roel Janssen 241994230b
gnu: htslib: Update to 1.12.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.12.
2021-04-29 12:13:46 +02:00
Mathieu Othacehe a6a36059d5
gnu: kmscon: Fix layout setup.
Kmscon may discover multiple inputs, corresponding to multiple devices. This
means that the uxkb_dev_keymap_update function may be called multiple times,
and the FIFO is registered on each input poll loop.

When a new layout is written on the FIFO by the installer, the first input
picking up the message, will apply the new layout. However, that input may not
be the input that the user is currently using.

To fix it, register the FIFO on the first input poll loop, but apply the new
layout on all the inputs in the uxkb_keymap_update_handler function.

* gnu/packages/patches/kmscon-runtime-keymap-switch.patch
(uxkb_keymap_update_handler): Apply the new layout to all the inputs.
(input_new_dev): Register the FIFO fd only on the first input poll loop.
2021-04-29 12:12:13 +02:00
Ricardo Wurmus 74b3f2cbb1
gnu: Add r-qpcr.
* gnu/packages/cran.scm (r-qpcr): New variable.
2021-04-29 09:55:57 +02:00
Kyle Meyer 04ef4c7880
gnu: git-annex: Update to 8.20210428.
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210428.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-29 10:17:23 +03:00
Ryan Prior eed2c4843f
gnu: oil: Update to 0.8.10.
* gnu/packages/shells.scm (oil): Update to 0.8.10.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-29 10:14:03 +03:00
BonfaceKilz f2b2016bfd
gnu: Add python-hissp.
* gnu/packages/python-xyz.scm (python-hissp): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-29 10:01:16 +03:00
Kei Kebreau 685e4733ad
gnu: xaos: Update to 4.2.1.
* gnu/packages/maths.scm (xaos): Update to 4.2.1.
[arguments]: Patch call to "lrelease" in XaoS.pro.
2021-04-29 00:44:03 -04:00
Vagrant Cascadian d018a11ee0
gnu: linux-libre-arm64-generic@5.10: Add eDP panel, audio and battery
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.10-source): Add pinebook pro lcd patch.
  (linux-libre-arm64-generic-5.10): Add audio and battery modules.
2021-04-28 16:56:58 -07:00
Vagrant Cascadian e7fbf10066
gnu: linux-libre-arm64-generic: Add eDP panel, battery and audio
support for Pinebook Pro.

* gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro
  lcd patch.
  (linux-libre-arm64-generic): Enable audio and battery modules for
  Pinebook Pro.
* gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
2021-04-28 16:56:35 -07:00
Ludovic Courtès 9dc1c591a4
inferior: Make sure test refers to guile@3.0.
* tests/inferior.scm ("inferior-package-inputs"): Compare with
GUILE-3.0-LATEST since that's what 'lookup-inferior-packages' returns.
2021-04-29 01:22:04 +02:00
Ludovic Courtès 524c9800af
diagnostics, ui: Adjust to 'read-error' and 'syntax-error' in Guile 3.0.6.
* guix/diagnostics.scm (source-properties->location): Add clause for
vectors.
* guix/ui.scm (report-load-error): Tweak 'read-error' handling for 3.0.6.
* tests/guix-package.sh: Relax regexp for the "unbound variable"
diagnostic check.
* tests/guix-system.sh: Adjust "missing closing paren" check for 3.0.6.
* tests/records.scm (location-alist): New procedure.
("define-record-type* & wrong field specifier")
("define-record-type* & wrong field specifier, identifier")
("define-record-type* & duplicate initializers"): Use it.
2021-04-29 01:22:04 +02:00
Ludovic Courtès 0ce1b28151
packages: 'package-with-patches' preserves package location.
* guix/packages.scm (package-with-patches): Preserve the 'location'
field of ORIGINAL.
2021-04-29 01:22:04 +02:00
Xinglu Chen 0d570b6019
gnu: emacs-hyperbole: Install images and help files.
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Include help file
and install images for the manual.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-04-29 00:29:41 +02:00
Xinglu Chen 43684b19da
gnu: emacs-corfu: Update to 0.4.
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.4.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-04-29 00:25:29 +02:00
Leo Famulari 22b3dd559c
gnu: isc-dhcp: Update bundled BIND to 9.11.31 [security fixes].
Fixes CVE-2021-{25214,25215,25216].

* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.31.
2021-04-28 17:26:05 -04:00
Tobias Geerinckx-Rice b95f422714
gnu: bind: Update to 9.16.15 [fixes CVE-2021-25214, CVE-2021-25215, CVE-2021-25216].
* gnu/packages/dns.scm (isc-bind): Update to 9.16.15.
2021-04-28 22:35:13 +02:00
Leo Famulari 958613f1af
gnu: linux-libre 4.4: Update to 4.4.268.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.268.
(linux-libre-4.4-pristine-source): Update hash.
2021-04-28 16:32:54 -04:00
Leo Famulari cdd22eacae
gnu: linux-libre 4.9: Update to 4.9.268.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.268.
(linux-libre-4.9-pristine-source): Update hash.
2021-04-28 16:32:54 -04:00
Leo Famulari a3535c4383
gnu: linux-libre 4.14: Update to 4.14.232.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.232.
(linux-libre-4.14-pristine-source): Update hash.
2021-04-28 16:32:54 -04:00
Leo Famulari 75d8067779
gnu: linux-libre 4.19: Update to 4.19.189.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.189.
(linux-libre-4.19-pristine-source): Update hash.
2021-04-28 16:32:54 -04:00
Leo Famulari 3d1c37122e
gnu: linux-libre 5.4: Update to 5.4.115.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.115.
(linux-libre-5.4-pristine-source): Update hash.
2021-04-28 16:32:53 -04:00