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Author SHA1 Message Date
Ricardo Wurmus bd1ff10ea0
gnu: r-pillar: Update to 1.5.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.5.1.
[native-inputs]: Add r-knitr.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus 6fe7e138b9
gnu: r-argparser: Update to 0.7.1. 
* gnu/packages/cran.scm (r-argparser): Update to 0.7.1.
 2021-03-09 22:05:26 +01:00
Ricardo Wurmus 5136cc1306
gnu: r-cli: Update to 2.3.1. 
* gnu/packages/cran.scm (r-cli): Update to 2.3.1.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 0496ce3c44
gnu: r-broom: Update to 0.7.5. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.5.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 6c7d9efdd8
gnu: r-ipred: Update to 0.9-10. 
* gnu/packages/cran.scm (r-ipred): Update to 0.9-10.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus b3700e61d4
gnu: r-energy: Update to 1.7-8. 
* gnu/packages/cran.scm (r-energy): Update to 1.7-8.
[propagated-inputs]: Add r-gsl.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 37097b923c
gnu: r-rmpi: Update to 0.6-9.1. 
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-9.1.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 4fcbe65d61
gnu: r-proxy: Update to 0.4-25. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-25.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus adbd713085
gnu: r-ggally: Update to 2.1.1. 
* gnu/packages/cran.scm (r-ggally): Update to 2.1.1.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 7ff93d3483
gnu: r-ffbase: Update to 0.13.3. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.13.3.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 84e39b3d99
gnu: r-pkgload: Update to 1.2.0. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.0.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 601a112bb2
gnu: r-ps: Update to 1.6.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.6.0.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus f0f2e2cbda
gnu: r-partykit: Update to 1.2-13. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-13.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus fa00e35b9e
gnu: r-rticles: Update to 0.19. 
* gnu/packages/cran.scm (r-rticles): Update to 0.19.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 260259f5ef
gnu: r-waldo: Update to 0.2.5. 
* gnu/packages/cran.scm (r-waldo): Update to 0.2.5.
 2021-03-09 22:05:25 +01:00
Ricardo Wurmus 4be2e0f309
gnu: r-cachem: Update to 1.0.4. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.4.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus ef8e4f4172
gnu: r-wgcna: Update to 1.70-3. 
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus 7fffee5e34
gnu: Add r-terra. 
* gnu/packages/cran.scm (r-terra): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus 1bbf632574
gnu: Add r-ggtext. 
* gnu/packages/cran.scm (r-ggtext): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus c341a4d02e
gnu: Add r-gridtext. 
* gnu/packages/cran.scm (r-gridtext): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus 91aa72bfe2
gnu: Add r-palmerpenguins. 
* gnu/packages/cran.scm (r-palmerpenguins): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus bcdf0cf3a5
gnu: Add r-rstpm2. 
* gnu/packages/cran.scm (r-rstpm2): New variable.
 2021-03-09 22:05:24 +01:00
Ricardo Wurmus 3c04e179b7
gnu: Add r-fastghquad. 
* gnu/packages/cran.scm (r-fastghquad): New variable.
 2021-03-09 22:05:24 +01:00
Efraim Flashner 80c83756e9
gnu: evisum: Update to 0.5.11. 
* gnu/packages/enlightenment.scm (evisum): Update to 0.5.11.
 2021-03-09 22:59:20 +02:00
Felix Gruber 251b0f7a6f
gnu: vtk: Fix build failure. 
* gnu/packages/image-processing.scm (vtk): Fix build failure.
[source]: Add patch to fix build failure with recent versions of freetype.
* gnu/packages/patches/vtk-fix-freetypetools-build-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-03-09 22:32:41 +02:00
Efraim Flashner 5b74e21e12
gnu: ruby-pstree: Update to 0.3.0. 
* gnu/packages/ruby.scm (ruby-pstree): Update to 0.3.0.
 2021-03-09 22:27:39 +02:00
Christopher Baines f5ffb3bd9c
weather: Call lookup-narinfos with a custom progress reporter. 
This means there's a useful progress bar when running guix weather.

* guix/scripts/weather.scm (report-server-coverage): Pass
 #:make-progress-reporter to lookup-narinfos.
 2021-03-09 20:19:36 +00:00
Christopher Baines fd5b77503e
guix: substitutes: Make progress reporting configurable. 
Rather than always outputting to (current-error-port) in
lookup-narinfos (which is called from within lookup-narinfos/diverse), take a
procedure which should return a progress reporter, and defer any output to
that.

As this is now general purpose code, make the default behaviour to output
nothing. Maintain the current behaviour of the substitute script by moving the
progress reporter implementation there, and passing it in when calling
lookup-narinfos/diverse.

These changes should be generally useful, but I'm particularly looking at
getting guix weather to do progress reporting differently, with this new
flexibility.

* guix/substitutes.scm (fetch-narinfos): Take a procedure to make a
progress-reporter, and use that rather than the hardcoded behaviour.
(lookup-narinfos): Add #:make-progress-reporter keyword argument, and pass
this through to fetch-narinfos.
(lookup-narinfos/diverse): Add a #:make-progress-reporter keyword argument,
and pass this through to lookup-narinfos.
* guix/scripts/substitute.scm (process-query): Pass a progress-reporter to
lookup-narinfos/diverse.
 2021-03-09 20:19:33 +00:00
Nicolas Goaziou d019bce1a3
gnu: emacs-php-mode: Update to 1.24.0. 
* gnu/packages/emacs-xyz.scm (emacs-php-mode): Update to 1.24.0.
[arguments]: Include "lisp/" directory, and add it to load path before byte-compiling.
 2021-03-09 21:08:36 +01:00
Raghav Gururajan eb4ed63fc4
gnu: Rename "t" to "t-todo-manager". 
* gnu/packages/task-management.scm (t): Rename to t-todo-manager.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-03-09 18:45:51 +01:00
Ludovic Courtès b1cabedd28
gnu: xvfb-run: Fix syntax error. 
Error introduced in 07f77812c4.

* gnu/packages/xorg.scm (xvfb-run)[license]: Fix syntax.
 2021-03-09 16:17:56 +01:00
Ludovic Courtès 973c6f18eb
gnu: guile-next: Reintroduce as a 3.0.x snapshot. 
* gnu/packages/guile.scm (guile-next): Rewrite as a 3.0.x snapshot.
 2021-03-09 16:16:05 +01:00
Tobias Geerinckx-Rice 07f77812c4
gnu: xvfb-run: Add man page licence. 
* gnu/packages/xorg.scm (xvfb-run)[license]: Add gpl2+.
 2021-03-09 15:29:08 +01:00
Tobias Geerinckx-Rice 35d9d5bfa6
gnu: s-tui: Update to 1.1.1. 
* gnu/packages/admin.scm (s-tui): Update to 1.1.1.
 2021-03-09 15:24:51 +01:00
Tobias Geerinckx-Rice 77077d90cd
gnu: inxi-minimal: Update to 3.3.01-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.01-1.
 2021-03-09 15:24:51 +01:00
Tobias Geerinckx-Rice 1e4b80ad65
gnu: sigrok-cli: Update to 0.7.2. 
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.2.
 2021-03-09 15:24:51 +01:00
Tobias Geerinckx-Rice 2e6d40b373
gnu: lrzip: Update to 0.641. 
* gnu/packages/compression.scm (lrzip): Update to 0.641.
 2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 4685a468f8
gnu: libime: Update to 1.0.4. 
* gnu/packages/fcitx5.scm (libime): Update to 1.0.4.
 2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 362d478746
gnu: libfastjson: Update to 0.99.9. 
* gnu/packages/c.scm (libfastjson): Update to 0.99.9.
 2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 5a948f3142
gnu: progress: Update to 0.16. 
* gnu/packages/admin.scm (progress): Update to 0.16.
 2021-03-09 15:24:50 +01:00
Tobias Geerinckx-Rice 9f87758fd5
gnu: Add xvfb-run. 
* gnu/packages/xorg.scm (xvfb-run): New public variable.
 2021-03-09 15:24:49 +01:00
Tobias Geerinckx-Rice 4c6fa85136
gnu: ppsspp: Update to 1.11.3. 
* gnu/packages/emulators.scm (ppsspp): Update to 1.11.3.
 2021-03-09 15:24:49 +01:00
Tobias Geerinckx-Rice 17db882d29
gnu: solaar: Fix home page. 
* gnu/packages/admin.scm (solaar)[home-page]: Correct.
 2021-03-09 15:24:49 +01:00
Tobias Geerinckx-Rice de1f866465
gnu: solaar: Update to 1.0.5. 
* gnu/packages/admin.scm (solaar): Update to 1.0.5.
 2021-03-09 15:24:49 +01:00
Efraim Flashner d90165826c
gnu: solfege: Build with older texinfo. 
The package failed to build with texinfo-6.7.

* gnu/packages/music.scm (solfege)[native-inputs]: Replace texinfo with
texinfo-5.
 2021-03-09 16:13:18 +02:00
Efraim Flashner c3fb753045
gnu: python-logwrap: Update to 8.2.0.post0. 
* gnu/packages/python-xyz.scm (python-logwrap): Update to 8.2.0.post0.
[arguments]: Disable tests. Replace 'check phase.
[propagated-inputs]: Remove python-six, python-typing.
[native-inputs]: Remove unzip, python-pytest-cov, python-pytest-runner.
Add python-setuptools-scm, python-toml, python-wheel.
[home-page]: Update to new upstream URI.
 2021-03-09 16:04:50 +02:00
Efraim Flashner 12640deb50
gnu: symengine: Fix build. 
* gnu/packages/algebra.scm (symengine)[native-inputs]: Remove llvm.
[arguments]: Adjust accordingly.
 2021-03-09 15:44:31 +02:00
Efraim Flashner 40b3e9da49
gnu: xygrib: Fix compiling with newer qt. 
* gnu/packages/geo.scm (xygrib)[source]: Adjust snippet to add missing
include header.
 2021-03-09 15:32:05 +02:00
Ricardo Wurmus 133a918923
gnu: trim-galore: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.6.
 2021-03-09 11:54:59 +01:00
Ricardo Wurmus 49d85b3f11
gnu: bbmap: Update to 38.90. 
* gnu/packages/bioinformatics.scm (bbmap): Update to 38.90.
 2021-03-09 11:54:59 +01:00