Ricardo Wurmus
|
baaed6fd68
|
gnu: r-bamsignals: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.24.0.
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2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
3e290768c6
|
gnu: r-aroma-light: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.22.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
2071ed58d5
|
gnu: r-annotationhub: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
4d13cf066d
|
gnu: r-annotationforge: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
361f2f647a
|
gnu: r-annotationfilter: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.16.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
c7811ed4bf
|
gnu: r-annotationdbi: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.0.
[propagated-inputs]: Add r-keggrest.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
1bb87755b8
|
gnu: r-annotate: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.70.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
308067c09c
|
gnu: r-affxparser: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
dfeb135ef0
|
gnu: r-affyio: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.62.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
a9083169c6
|
gnu: r-affycoretools: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.64.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
3abb0b6523
|
gnu: r-affycontam: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.50.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
bd17befeb1
|
gnu: r-affycompatible: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.52.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
b045bf2d6f
|
gnu: r-affycomp: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.68.0.
|
2021-06-05 09:12:41 +02:00 |
|
|
Ricardo Wurmus
|
af04e2cc12
|
gnu: r-affy: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.70.0.
|
2021-06-05 09:12:41 +02:00 |
|
|
Ricardo Wurmus
|
60b9546472
|
gnu: r-iranges: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.26.0.
|
2021-06-05 09:12:41 +02:00 |
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|
Ricardo Wurmus
|
cfd4c05bd4
|
gnu: r-ideoviz: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.28.0.
|
2021-06-05 09:12:40 +02:00 |
|
|
Ricardo Wurmus
|
4075ac7287
|
gnu: r-bluster: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.2.1.
[propagated-inputs]: Add r-cluster.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
8eb0c715e3
|
gnu: r-delayedarray: Update to 0.18.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.18.0.
|
2021-06-05 09:12:40 +02:00 |
|
|
Ricardo Wurmus
|
f0f839c124
|
gnu: r-deepsnv: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
|
2021-06-05 09:12:40 +02:00 |
|
|
Ricardo Wurmus
|
dec096f827
|
gnu: r-decipher: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.20.0.
[propagated-inputs]: Add r-dbi, r-iranges, r-s4vectors, and r-xvector.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
116df58449
|
gnu: r-cummerbund: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.34.0.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
e6c5d8ce2c
|
gnu: r-coverageview: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.30.0.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
7bac473d06
|
gnu: r-biocgenerics: Update to 0.38.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.38.0.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
b05761a5a9
|
gnu: r-biocversion: Update to 3.13.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.13.1.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
405b386656
|
gnu: r-aneufinder: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.20.0.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
75817956c1
|
gnu: r-hdf5array: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.20.0.
[arguments]: Remove.
[propagated-inputs]: Add r-rhdf5filters.
|
2021-06-05 09:12:40 +02:00 |
|
|
Ricardo Wurmus
|
bfa23ec526
|
gnu: r-cytoml: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.4.0.
[arguments]: Remove.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
764e2dba20
|
gnu: r-flowworkspace: Update to 4.4.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
b9751b629c
|
gnu: r-ncdfflow: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.38.0.
[arguments]: Remove.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
5c37a048bb
|
gnu: r-cytolib: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.4.0.
[arguments]: Remove.
[native-inputs]: Remove pkg-config.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
782d27f77d
|
gnu: r-rhdf5: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.36.0.
[arguments]: Remove.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
87d06a725f
|
gnu: r-mzr: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
5d13aab6ca
|
gnu: r-msnid: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.26.0.
[arguments]: Set HOME variable.
|
2021-06-05 09:12:40 +02:00 |
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|
Ricardo Wurmus
|
d0a7dc0cb6
|
gnu: r-bioccheck: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
1b0338d76b
|
gnu: r-rhdf5lib: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
53ec97713a
|
gnu: Add r-metapod.
* gnu/packages/bioconductor.scm (r-metapod): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
8caab75883
|
gnu: Add r-ggtree.
* gnu/packages/bioconductor.scm (r-ggtree): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
ab4a91b252
|
gnu: Add r-treeio.
* gnu/packages/bioconductor.scm (r-treeio): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
fd4fa40ac4
|
gnu: Add r-scaledmatrix.
* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
efefb2be3a
|
gnu: Add r-trajectoryutils.
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
ce99b4da63
|
gnu: Add r-restfulr.
* gnu/packages/bioconductor.scm (r-restfulr): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
ab66c9a2cd
|
gnu: Add r-arrow.
* gnu/packages/cran.scm (r-arrow): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
b71f21339f
|
gnu: Add r-ggpointdensity.
* gnu/packages/cran.scm (r-ggpointdensity): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
41ea9bed97
|
gnu: Add r-ggnewscale.
* gnu/packages/cran.scm (r-ggnewscale): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
d5c08f11e1
|
gnu: Add r-aplot.
* gnu/packages/cran.scm (r-aplot): New variable.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
c343c3bc1f
|
guix: Update to Bioconductor 3.13.
* guix/build-system/r.scm (bioconductor-uri): Update version.
* guix/import/cran.scm (%bioconductor-version): Update.
|
2021-06-05 09:12:39 +02:00 |
|
|
Ricardo Wurmus
|
f98837a6ba
|
gnu: pigx-rnaseq: Update to 0.0.13.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.13.
[arguments]: Remove obsolete substitutions.
[inputs]: Remove fastqc and trim-galore; add hisat2 and fastp.
|
2021-06-05 09:12:39 +02:00 |
|
Roel Janssen
|
7382aa00b8
|
gnu: python-scanpy: Update to 1.7.2.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.7.2.
|
2021-06-04 23:51:35 +02:00 |
|
|
Roel Janssen
|
e639da604f
|
gnu: python-anndata: Update to 0.7.6.
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
|
2021-06-04 23:51:24 +02:00 |
|
Brendan Tildesley
|
29745d23b8
|
gnu: Use define-public in (gnu packages xiph).
* gnu/pakages/xiph.scm: Replace all manual package #:exports with
define-public.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
|
2021-06-04 15:08:35 +02:00 |
|