Commit graph

56292 commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
2020-03-02 21:46:27 +01:00
Nicolas Goaziou
45a2636a0b
gnu: emacs-modus-themes: Update to 0.6.0.
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.6.0.
2020-03-02 21:37:15 +01:00
Leo Famulari
8e1f5aaba2
gnu: Syncthing: Fix installation of the 'util' package output.
* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the 'install' phase.
2020-03-02 15:36:21 -05:00
Efraim Flashner
7b1ba1e4fc
gnu: librsvg-next: Fix cargo dependency.
* gnu/packages/gnome.scm (librsvg-next-source): Don't hardcode patch
version of cargo inputs.
2020-03-02 22:11:16 +02:00
Efraim Flashner
597f41ca49
gnu: rust-diff-0.1: Update to 0.1.12.
* gnu/packages/crates-io.scm (rust-diff-0.1): Update to 0.1.12.
[arguments]: Replace rust-quickcheck-0.8 with 0.9 in
cargo-development-inputs.
2020-03-02 22:09:04 +02:00
Efraim Flashner
4b309aad04
gnu: rust-defmac-0.2: Don't skip build.
* gnu/packages/crates-io.scm (rust-defmac-0.2)[arguments]: Don't skip
build.
2020-03-02 21:58:22 +02:00
Efraim Flashner
64a28fd6e1
gnu: rust-datetime-0.4: Don't skip build.
* gnu/packages/crates-io.scm (rust-datetime-0.4)[arguments]: Don't skip
build. Add rust-regex-0.1 to cargo-development-inputs.
2020-03-02 21:56:54 +02:00
Efraim Flashner
49877d9fd6
gnu: rust-constant-time-eq-0.1: Don't skip build.
* gnu/packages/crates-io.scm (rust-constant-time-eq-0.1)[arguments]:
Don't skip build.
2020-03-02 21:48:02 +02:00
Vincent Legoll
bdcec7028c
gnu: debootstrap: Update to 1.0.119.
* gnu/packages/debian.scm (debootstrap): Update to 1.0.119.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-03-02 21:33:28 +02:00
Efraim Flashner
c1febbbf94
gnu: vim: Update to 8.2.0343.
* gnu/packages/vim.scm (vim): Update to 8.2.0343.
2020-03-02 10:40:34 +02:00
Ricardo Wurmus
5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
2020-03-01 23:38:33 +01:00
Ricardo Wurmus
e766ba9a52
gnu: r-cicero: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
2020-03-01 23:38:26 +01:00
Ricardo Wurmus
0a30342def
gnu: r-mlinterfaces: Update to 1.66.4.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
2020-03-01 23:38:19 +01:00
Ricardo Wurmus
aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
2020-03-01 23:38:12 +01:00
Ricardo Wurmus
8351faae8a
gnu: r-chippeakanno: Update to 3.20.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
2020-03-01 23:38:06 +01:00
Ricardo Wurmus
f73b75e00c
gnu: r-hdf5array: Update to 1.14.3.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
2020-03-01 23:37:58 +01:00
Ricardo Wurmus
6c1f5a1b7e
gnu: r-rsamtools: Update to 2.2.3.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
2020-03-01 23:37:52 +01:00
Ricardo Wurmus
9bbf3f9de2
gnu: r-edger: Update to 3.28.1.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
2020-03-01 23:37:40 +01:00
Ricardo Wurmus
efb98dd09d
gnu: gwl: Update to 0.2.1.
* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
42c7f6e748
gnu: r-nloptr: Update to 1.2.2.
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
b3be560e23
gnu: r-gplots: Update to 3.0.3.
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
8bcbb67c17
gnu: r-mvtnorm: Update to 1.1-0.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
2589dc4b50
gnu: r-rlang: Update to 0.4.5.
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
fb93e2f539
gnu: r-digest: Update to 0.6.25.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
51d36a12b7
gnu: r-nnet: Update to 7.3-13.
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.
2020-03-01 23:21:18 +01:00
Ricardo Wurmus
e3eb7ee474
gnu: r-seurat: Update to 3.1.4.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4.
[propagated-inputs]: Add r-patchwork.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
339fa00a98
gnu: r-wgcna: Update to 1.69.
* gnu/packages/cran.scm (r-wgcna): Update to 1.69.
[propagated-inputs]: Remove r-robust.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
78acab4818
gnu: r-quanteda: Update to 2.0.0.
* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0.
[propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add
r-jsonlite.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
2fc3575608
gnu: r-gdina: Update to 2.7.9.
* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
0c51197b3c
gnu: r-subplex: Update to 1.6.
* gnu/packages/cran.scm (r-subplex): Update to 1.6.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
ecbae383d8
gnu: r-rpf: Update to 1.0.3.
* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
2a216f5a5f
gnu: r-dalex: Update to 1.0.1.
* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
79f7e127ea
gnu: r-styler: Update to 1.3.2.
* gnu/packages/cran.scm (r-styler): Update to 1.3.2.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
cd4a4eafcc
gnu: r-gridgraphics: Update to 0.5-0.
* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
851e576213
gnu: r-protviz: Update to 0.6.3.
* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
5144de4b1d
gnu: r-rvcheck: Update to 0.1.8.
* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
d41528b093
gnu: r-rcppannoy: Update to 0.0.15.
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.
2020-03-01 23:21:17 +01:00
Ricardo Wurmus
19b0b54ed1
gnu: r-mvabund: Update to 4.1.3.
* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
a0077446a1
gnu: r-manipulatewidget: Update to 0.10.1.
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
0fab5a4769
gnu: r-effectsize: Update to 0.2.0.
* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
1bd8563322
gnu: r-factominer: Update to 2.3.
* gnu/packages/cran.scm (r-factominer): Update to 2.3.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
a670564929
gnu: r-tinytex: Update to 0.20.
* gnu/packages/cran.scm (r-tinytex): Update to 0.20.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
f7dc4f7bfd
gnu: r-uuid: Update to 0.1-4.
* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
d67f83072c
gnu: r-broom: Update to 0.5.5.
* gnu/packages/cran.scm (r-broom): Update to 0.5.5.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
353b3515a6
gnu: r-cli: Update to 2.0.2.
* gnu/packages/cran.scm (r-cli): Update to 2.0.2.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
8a9d551c8d
gnu: r-sp: Update to 1.4-1.
* gnu/packages/cran.scm (r-sp): Update to 1.4-1.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
9e3a089b44
gnu: r-dendextend: Update to 1.13.4.
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.4.
2020-03-01 23:21:16 +01:00
Ricardo Wurmus
dfa052726a
gnu: r-modelr: Update to 0.1.6.
* gnu/packages/cran.scm (r-modelr): Update to 0.1.6.
[propagated-inputs]: Add r-tidyselect.
2020-03-01 23:21:15 +01:00
Ricardo Wurmus
ade9158b62
gnu: r-matrix-utils: Update to 0.9.8.
* gnu/packages/cran.scm (r-matrix-utils): Update to 0.9.8.
2020-03-01 23:21:15 +01:00
Ricardo Wurmus
975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0.
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
2020-03-01 23:21:15 +01:00