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Author SHA1 Message Date
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix 
* gnu/packages/statistics.scm (r): Use uname from Guix.
 2016-10-27 16:37:24 +02:00
Marius Bakke 6178274d19
gnu: python-urllib3: Update to 1.18.1. 
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
 2016-10-27 14:03:07 +01:00
Ludovic Courtès 631fda7e90
gnu: Add mdadm-static. 
* gnu/packages/linux.scm (mdadm-static): New variable.
 2016-10-27 13:48:52 +02:00
Efraim Flashner 7d876afdd8
gnu: libmikmod: Update to 3.3.10. 
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
 2016-10-27 12:23:04 +03:00
Efraim Flashner 355d8e873b
gnu: sdl2: Update to 2.0.5. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
 2016-10-27 12:23:04 +03:00
Efraim Flashner 5d5790ce44
gnu: Use 'https' for libsdl urls. 
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
 2016-10-27 12:23:03 +03:00
Tobias Geerinckx-Rice 483b7ce7ae
gnu: mcelog: Update to 144. 
* gnu/packages/linux.scm (mcelog): Update to 144.
 2016-10-27 11:03:34 +02:00
Tobias Geerinckx-Rice 6270769dc2
gnu: btrfs-progs: Update to 4.8.2. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
 2016-10-27 11:03:34 +02:00
Mike Gerwitz cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite. 
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'.  Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-27 09:56:54 +01:00
Mike Gerwitz a6b256affc
gnu: Add pcsc-lite. 
* gnu/packages/security-token.scm (pcsc-lite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-10-27 09:56:52 +01:00
ng0 8888fe826c
gnu: Add dbacl. 
* gnu/packages/textutils.scm (dbacl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-27 11:42:39 +03:00
Efraim Flashner 5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax. 
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
 2016-10-27 11:42:38 +03:00
Efraim Flashner e68168eb87
gnu: valgrind: Update to 3.12.0. 
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
 2016-10-27 11:42:29 +03:00
Hartmut Goebel 49a531f545
gnu: python-pathlib2: Add comment. 
As suggested by Efraim Flashner.

* gnu/packages/python.scm (python-pathlib2): Add comment.
 2016-10-27 10:09:10 +02:00
Leo Famulari 522fc32ebd
gnu: shotwell: Update to 0.25.0. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
 2016-10-26 20:10:05 -04:00
Leo Famulari 30b1267830
gnu: vdirsyncer: Update to 0.14.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
 2016-10-26 19:56:15 -04:00
ng0 5d73e30000
gnu: Add lci. 
* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 20:39:27 +03:00
Christopher Allan Webber 8caeb11772
gnu: Add autossh. 
* gnu/packages/ssh.scm (autossh): New variable.
 2016-10-26 11:22:17 -05:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 2ffcd6607b
gnu: r-curl: Update to 2.2. 
* gnu/packages/web.scm (r-curl): Update to 2.2.
 2016-10-26 16:23:26 +02:00
Ricardo Wurmus a46cc723ff
gnu: r-seqinr: Update to 3.3-3. 
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
 2016-10-26 16:23:26 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0. 
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus c70271ec48
gnu: bioperl-minimal: Update to 1.7.0. 
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
 2016-10-26 16:23:24 +02:00
Marius Bakke 39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a. 
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.

This is a follow-up to 47a04fca99.

* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
 2016-10-26 15:03:42 +01:00
ng0 b2a2232c33
gnu: python-certifi: Update to 2016.8.31. 
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-10-26 14:31:16 +03:00
Marius Bakke 07b1fb8675
gnu: security-token: Use 'license:' prefix. 
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
 2016-10-26 11:00:58 +01:00
Marius Bakke f9c339603d
gnu: yubico.scm: Rename to security-token.scm. 
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2016-10-26 10:45:49 +01:00
Marius Bakke 7a6213cbd7
gnu: offlineimap: Install documentation. 
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
 2016-10-26 10:45:49 +01:00
Marius Bakke d2a9b531fb
gnu: notmuch: Update to 0.23.1. 
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
 2016-10-26 10:45:49 +01:00
Efraim Flashner 8f5f6c922f
gnu: vlc: Add x265 support. 
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
 2016-10-26 12:19:19 +03:00
Efraim Flashner e3cb00d210
gnu: gst-plugins-bad: Add x265 support. 
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
 2016-10-26 12:19:18 +03:00
Efraim Flashner d505801a06
gnu: ffmpeg: Add x265 support. 
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
 2016-10-26 12:19:18 +03:00