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Author SHA1 Message Date
Maxim Cournoyer
b36c09c721
gnu: meson-0.55: Update to 0.55.3. 
* gnu/packages/build-tools.scm (meson-0.55): Update to 0.55.3.
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
b42509817e
gnu: meson: Update to 0.56.2. 
* gnu/packages/build-tools.scm (meson): Update to 0.56.2.

acc#	modified:   gnu/packages/build-tools.scm
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
b6a50fae1f
gnu: fifengine: Do not alter PYTHONPATH. 
* gnu/packages/games.scm (fifengine): Import the (guix build
python-build-system) module.
[phases]{check}: Simplify by using the 'add-installed-pythonpath' procedure.
Remove trailing #t.
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
d7354701dc
gnu: intel-xed: Update to 12.0.1. 
This fixes the build on Python 3.9.

* gnu/packages/assembly.scm (intel-xed): Update to 12.0.1.
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
97bb78ad7c
gnu: python-hyperkitty: Do not set PYTHONPATH. 
* gnu/packages/mail.scm (python-hyperkitty)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
96bc1b499f
gnu: graphite2: Do not alter PYTHONPATH. 
* gnu/packages/fontutils.scm (graphite2)[arguments]: Remove field.
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
3d9e8062bf
gnu: python-django-url-filter: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django-url-filter)
[phases]: Delete trailing #t.
{check}: Do not alter PYTHONPATH.
 2021-02-01 11:53:50 -05:00
Maxim Cournoyer
1df75a20b0
gnu: python-django-statici18n: Do not read PYTHONPATH. 
* gnu/packages/django.scm (python-django-statici18n)
[phases]{check}: Do not read PYTHONPATH from environment.  Do not set
build/lib explicitly (the install site path is already in the Guix
PYTHONPATH).
 2021-02-01 11:53:49 -05:00
Maxim Cournoyer
f7f507b577
gnu: python-django-appconf: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django-appconf)
[phases]{check}: Do not alter PYTHONPATH.
 2021-02-01 11:53:49 -05:00
Maxim Cournoyer
283d5ac97f
gnu: python-django-sortedm2m: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django-sortedm2m)
[phases]{check}: Do not alter PYTHONPATH.  Remove trailing #t.
 2021-02-01 11:53:49 -05:00
Maxim Cournoyer
de66b6fedb
gnu: python-django-pipeline: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django-pipeline): Remove trailing #t.
[phases]{check}: Do not alter PYTHONPATH.
 2021-02-01 11:53:49 -05:00
Maxim Cournoyer
905127eb18
gnu: python-django-contact-form: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django-contact-form):
[phases]{check}: Do not alter PYTHONPATH.
 2021-02-01 11:53:49 -05:00
Maxim Cournoyer
fbf120aad8
gnu: python-pytest-django: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django): Remove trailing #t.
[phases]{check}: Do not alter PYTHONPATH.
 2021-02-01 11:53:49 -05:00
Maxim Cournoyer
774812df96
gnu: python-django: Do not alter PYTHONPATH. 
* gnu/packages/django.scm (python-django): Remove trailing #t.
[phases]{pre-check,check}: Do not alter PYTHONPATH.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
0b701d77e7
gnu: python-rpy2: Do not set PYTHONPATH. 
* gnu/packages/statistics.scm (python-rpy2)[arguments]: Remove the '#:modules'
argument.
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
e3bc7881f2
gnu: ghmm: Do not set PYTHONPATH. 
* gnu/packages/machine-learning.scm (ghmm): Remove trailing #t.
[phases]: Do not reorder the check phase after the install phase.
{fix-PYTHONPATH}: Remove phase.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
4327f06ed5
gnu: tensorflow: Do not alter PYTHONPATH. 
* gnu/packages/machine-learning.scm (tensorflow)[phases]: Delete trailing #t.
{fix-python-build}: Do not alter PYTHONPATH.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
a658d38b13
gnu: python-libtmux: Do not set PYTHONPATH. 
* gnu/packages/tmux.scm (python-libtmux)[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
df09535fc9
gnu: python-pyhamcrest: Update to 2.0.2. 
* gnu/packages/check.scm (python-pyhamcrest): Update to 2.0.2.
[propagated-inputs]: Remove python-six.
[phases]{check}: Do not set PYTHONPATH.
(python2-pyhamcrest): Remove variable.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
25c18d5385
gnu: behave: Do not set PYTHONPATH. 
* gnu/packages/check.scm (behave)[arguments]: Remove the '#:phases' argument.
[propagated-inputs]: Remove python-importlib-metadata and python-six.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
1ed567c872
gnu: ganeti: Do not set PYTHONPATH. 
* gnu/packages/virtualization.scm (ganeti): Remove trailing #t.
[phases]{build-bash-completions}: Do not set PYTHONPATH.
{pre-check}: Do patch PYTHONPATH from script.
{wrap}: Use the new GUIX_PYTHONPATH environment variable.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
40b67a1f2a
gnu: linkchecker: Do not set PYTHONPATH. 
* gnu/packages/web.scm (linkchecker): Remove trailing #t.
[phases]: Do not reorder the check phase after the install phase.
{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
220a153c2f
gnu: python-cffi: Do not set PYTHONPATH. 
* gnu/packages/libffi.scm (python-cffi): Remove trailing #t.
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
fcaec1c756
gnu: python-xmlschema: Do not set PYTHONPATH. 
* gnu/packages/xml.scm (python-xmlschema): Remove trailing #t.
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
44db90b39f
gnu: python-loompy: Do not set PYTHONPATH. 
* gnu/packages/bioinformatics.scm (python-loompy)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
21ce20bd2f
gnu: python-scanpy: Do not set PYTHONPATH. 
* gnu/packages/bioinformatics.scm (python-scanpy)[phases]
{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
3c0b373310
gnu: python-screed: Adjust following Python build system changes. 
* gnu/packages/bioinformatics.scm (python-screed)[arguments]: Remove field, no
longer necessary.
 2021-02-01 11:53:47 -05:00
Maxim Cournoyer
5e47bebf3b
gnu: bamm: Update following changes to the Python build system. 
* gnu/packages/bioinformatics.scm (bamm): Delete trailing #t.
[phases]{check}: Override rather than delete phase.  Remove trailing #t.
{post-install-check}: Delete phase.
{wrap-executable}: Also wrap with the new GUIX_PYTHONPATH.
 2021-02-01 11:53:46 -05:00
Maxim Cournoyer
98769a7709
gnu: python-pysam: Adjust following Python build system changes. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Remove the
'#:modules' argument.
[phases]: Remove trailing #t.
{check}: Do not manually set PYTHONPATH.
 2021-02-01 11:53:46 -05:00
Maxim Cournoyer
25798ca0e0
gnu: python-pybedtools: Streamline following Python build system changes. 
* gnu/packages/bioinformatics.scm (python-pybedtools): Remove trailing #t.
[phases]{check}: Do not manually set PYTHONPATH.
[arguments]: Remove the '#:modules' argument.
 2021-02-01 11:53:46 -05:00
Maxim Cournoyer
3016f1f21a
gnu: intel-xed: Adjust build phase. 
* gnu/packages/assembly.scm (intel-xed)
[phases]: Delete trailing #t.
{build}: Do not read PYTHONPATH from environment.
 2021-02-01 11:53:46 -05:00
Maxim Cournoyer
0a3226e8fc
gnu: solaar: Do not read PYTHONPATH from environment. 
* gnu/packages/admin.scm (solaar)
[phases]{setenv-PATH}: Do not read PYTHONPATH from environment.
 2021-02-01 11:53:46 -05:00
Maxim Cournoyer
6f54af26ce
gnu: python2-virtualenv: Fix build. 
* gnu/packages/python-xyz.scm (python2-virtualenv)[arguments]{phases}: Remove
argument.
 2021-02-01 11:53:46 -05:00
Lars-Dominik Braun
73068c77f1
gnu: python2-packaging-bootstrap: Add missing dependency 
* gnu/packages/python-xyz.scm (python2-packaging-bootstrap)
[propagated-inputs]: Add python2-six-bootstrap.
 2021-02-01 11:53:45 -05:00
Lars-Dominik Braun
42b89fbf30
gnu: python-traceback2: Add missing dependency. 
* gnu/packages/python-xyz.scm (python-traceback2)[propagated-inputs]:
Add python-six.
 2021-02-01 11:53:45 -05:00
Lars-Dominik Braun
1ea198f862
gnu: python-packaging-bootstrap: Remove dependency. 
* gnu/packages/python-xyz.scm (python-packaging-bootstrap) [arguments]:
Remove dependency from setup.py, which we do not provide for this
variant.
 2021-02-01 11:53:45 -05:00
Lars-Dominik Braun
e97e6c05cd
gnu: python-automat: Remove broken console script. 
* gnu/packages/python-xyz.scm (python-automat) [arguments]: Patch
setup.py.
 2021-02-01 11:53:45 -05:00
Lars-Dominik Braun
0868479d08
gnu: python-twisted: Remove broken console scripts. 
* gnu/packages/python-xyz.scm (python-twisted) [arguments]: Patch
setup.py.
 2021-02-01 11:53:45 -05:00
Lars-Dominik Braun
1ae919ec21
gnu: python-idna-ssl: Add missing input. 
* gnu/packages/python-xyz.scm (python-idna-ssl)[propagated-inputs]: Add
python-idna.
 2021-02-01 11:53:45 -05:00
Lars-Dominik Braun
32fcc9ba57
gnu: python-traitlets: Add missing input. 
* gnu/packages/python-xyz.scm (python-traitlets)[propagated-inputs]:
Add python-six.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
02b39eaafb
gnu: python-black: Remove blackd. 
* gnu/packages/python-xyz.scm (python-black) [arguments]: Add new phase
to prevent installation of blackd.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
9dd5fa2ea6
gnu: python-websockets: Fix Python package name. 
* gnu/packages/python-web.scm (python-websockets) [arguments]: Add new
phase to fix package name.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
774277ac79
gnu: python-slugify: Add missing input. 
* gnu/packages/python-web.scm (python-slugify) [propagated-inputs]: Add
python-text-unidecode.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
cfe2cf2a29
gnu: python-pyfakefs: Disable unreliable test 
* gnu/packages/check.scm (python-pyfakefs) [arguments]: Add new phase to
skip single test.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
355d87a0a5
gnu: python-pytest-pep8: Fix package. 
* gnu/packages/check.scm (python-pytest-pep8)[arguments]: Remove
dependency on pytest-cache and add proper 'check phase.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
da3c8e53c4
gnu: python-fixtures-bootstrap: Do not sanity check. 
* gnu/packages/check.scm (python-fixtures-bootstrap)
[phases]{sanity-check}: Delete.
 2021-02-01 11:53:44 -05:00
Lars-Dominik Braun
1a9d771f99
gnu: python-pytest-xdist: Add missing input, relax pytest requirement. 
* gnu/packages/check.scm: (python-pytest-xdist)
[arguments]: Relax pytest version requirements.
[propagated-inputs]: Add python-pytest-forked.
 2021-02-01 11:53:43 -05:00
Lars-Dominik Braun
09448c0994
build/python: Add a sanity check phase. 
Add a new phase validating the usability of installed Python packages.

* gnu/packages/aux-files/python/sanity-check.py: New file.
* Makefile.am (AUX_FILES): Register it.
* guix/build-system/python.scm (sanity-check.py): New variable.
(lower): Add the script as an implicit input.
* guix/build/python-build-system.scm: Remove trailing #t.
(sanity-check): New phase.
(%standard-phases): Use it.
* tests/builders.scm: (make-python-dummy)
(dummy-ok, dummy-dummy-nosetuptools, dummy-fail-requirements)
(dummy-fail-import, dummy-fail-console-script): New variables.
("python-build-system: dummy-ok")
("python-build-system: dummy-dummy-nosetuptools")
("python-build-system: dummy-fail-requirements")
("python-build-system: dummy-fail-import")
("python-build-system: dummy-fail-console-script"): Add tests.
 2021-02-01 11:53:43 -05:00
Maxim Cournoyer
8a15ecf0e3
build/python: Adjust wrap phase to use the new GUIX_PYTHONPATH. 
* guix/build/python-build-system.scm (wrap): Adjust to use the new
GUIX_PYTHONPATH.  Remove trailing #t.
 2021-02-01 11:53:43 -05:00
Maxim Cournoyer
15dcffecf2
build/python: Add the installation bin directory to PATH. 
This also to reduce the need for boilerplate code found in check phase
overrides.

* guix/build/python-build-system.scm (add-install-to-path): New phase.
(%standard-phases): Order it before the check phase.
 2021-02-01 11:53:43 -05:00