TakeV/guix
1
0
Fork 0
Code Issues Pull requests Packages Projects Releases Wiki Activity
49263 commits 102 branches 35 tags 561 MiB
Commit graph

49263 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus b06cdce923
gnu: Add r-velocyto. 
* gnu/packages/bioinformatics.scm (r-velocyto): New variable.
 2019-10-14 18:22:46 +02:00
Ricardo Wurmus 40be965e28
gnu: Add r-phastcons100way-ucsc-hg19. 
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
 2019-10-14 18:09:37 +02:00
Pierre Neidhardt 14db074e28
gnu: Add emacs-sly-package-inferred. 
* gnu/packages/emacs-xyz.scm (emacs-sly-package-inferred): New variable.
 2019-10-14 18:00:33 +02:00
Pierre Neidhardt de36efc2e0
gnu: Add emacs-sly-macrostep. 
* gnu/packages/emacs-xyz.scm (emacs-sly-macrostep): New variable.
 2019-10-14 18:00:32 +02:00
Pierre Neidhardt b0cf64c0bc
gnu: Add emacs-sly-named-readtables. 
* gnu/packages/emacs-xyz.scm (emacs-sly-named-readtables): New variable.
 2019-10-14 18:00:32 +02:00
Pierre Neidhardt 6078c0043d
gnu: emacs-sly-asdf: Update to 20191013. 
* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20191013.
 2019-10-14 18:00:32 +02:00
Stephen Webber 534610d820
gnu: Add emacs-dimmer. 
* gnu/packages/emacs-xyz.scm (emacs-dimmer): New variable.
 2019-10-14 17:19:54 +02:00
Tobias Geerinckx-Rice 8c26b18453
gnu: sudo: Update to 1.8.28 [fixes CVE-2019-14287]. 
* gnu/packages/admin.scm (sudo): Update to 1.8.28.
 2019-10-14 17:14:46 +02:00
Tobias Geerinckx-Rice 41cc799357
gnu: r-fields: Use HTTPS home-page. 
* gnu/packages/cran.scm (r-fields)[home-page]: Use HTTPS.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice e96a56f62d
gnu: r-fields: Update to 9.9. 
* gnu/packages/cran.scm (r-fields): Update to 9.9.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice f64cd5d1ac
gnu: sqitch: Update to 1.0.0. 
* gnu/packages/databases.scm (sqitch): Update to 1.0.0.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice 8fc3a337ab
gnu: network-manager-applet: Update to 1.8.24. 
* gnu/packages/gnome.scm (network-manager-applet): Update to 1.8.24.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice b55e328941
gnu: poedit: Update to 2.2.4. 
* gnu/packages/poedit.scm (poedit): Update to 2.2.4.
 2019-10-14 17:14:45 +02:00
Tobias Geerinckx-Rice 7f07dd7f0e
gnu: perl-cache-fastmmap: Update to 1.48. 
* gnu/packages/perl.scm (perl-cache-fastmmap): Update to 1.48.
 2019-10-14 17:14:45 +02:00
Mathieu Othacehe 396b05f04e
gexp: Use cross extensions when cross-compiling. 
* guix/gexp.scm (load-path-expression): Use ungexp-splicing instead of
ungexp-native-splicing so that the cross extensions are used when target is
set.
 2019-10-14 09:59:04 +02:00
Brian Leung 92f92a0fc8
gnu: emacs-unpackaged-el: Update to 0-3.746801a. 
* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el): Update to 0-3.746801a.
 2019-10-14 00:30:29 -07:00
Brian Leung 34d2367dc1
gnu: emacs-ivy-rich: Update to 0.1.4-2.7a667b1. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-rich): Update to 0.1.4-2.7a667b1.
 2019-10-14 00:30:24 -07:00
Eric Bavier bd04fe8786
gnu: HandBrake: Update to 1.2.2. 
* gnu/packages/video.scm (handbrake): Update to 1.2.2.
 2019-10-13 22:54:12 -05:00
Eric Bavier 136e3b392b
gnu: stress-make: Fix build and update. 
* gnu/packages/debug.scm (stress-make)[version]: Update to latest upstream
commit.  Bump revision.  Use 'git-version'.
[source]: Update url.  Use 'git-file-name'.
[home-page]: Update url likewise.
[arguments]: Add 'setup-go' phase.
[license]: Update license file name.
 2019-10-13 22:17:38 -05:00
Tobias Geerinckx-Rice 217f22d16a
gnu: xwd: Fix typo in description. 
* gnu/packages/xorg.scm (xwd)[description]: Fix typo.
 2019-10-14 00:40:30 +02:00
Tobias Geerinckx-Rice 509551c2a8
gnu: xwininfo: Update to 1.1.5. 
* gnu/packages/xorg.scm (xwininfo): Update to 1.1.5.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice 9cdf9468dd
gnu: emacs-nhexl-mode: Use HTTPS home page. 
* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode)[home-page]: Use HTTPS.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice d915065bac
gnu: emacs-nhexl-mode: Update to 1.3. 
* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode): Update to 1.3.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice fc319fde1a
gnu: emacs-darkroom: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-darkroom): Update to 0.2.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice d3dfeaa8fe
gnu: emacs-let-alist: Update to 1.0.6. 
* gnu/packages/emacs-xyz.scm (emacs-let-alist): Update to 1.0.6.
 2019-10-14 00:32:32 +02:00
Tobias Geerinckx-Rice d0b9fc9a89
gnu: emacs-csv-mode: Use HTTPS. 
* gnu/packages/emacs-xyz.scm (emacs-csv-mode)[source, home-page]: Use HTTPS.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice 80fd379784
gnu: emacs-csv-mode: Update to 1.9. 
* gnu/packages/emacs-xyz.scm (emacs-csv-mode): Update to 1.9.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice 5aa5187128
gnu: emacs-load-relative: Update to 1.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-load-relative): Update to 1.3.1.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice ca49db2735
gnu: emacs-debbugs: Update to 0.20. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.20.
 2019-10-14 00:32:31 +02:00
Tobias Geerinckx-Rice a201b0973e
gnu: starman: Update to 0.4015. 
* gnu/packages/web.scm (starman): Update to 0.4015.
 2019-10-14 00:32:31 +02:00
David Wilson 1c463524c8
gnu: Add playerctl. 
* gnu/packages/music.scm (playerctl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-14 00:08:33 +02:00
Kyle Meyer ff73bbf410
gnu: git-annex: Update to 7.20191009. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191009.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-14 00:08:10 +02:00
Ludovic Courtès efa8fddabe
gnu: commencement: Use 'package-with-explicit-inputs' for Hurd packages. 
* gnu/packages/commencement.scm (with-boot0): New procedure.
(gnumach-headers-boot0, mig-boot0)
(hurd-headers-boot0, hurd-minimal-boot0)
(hurd-core-headers-boot0): Use it instead of 'package-with-explicit-inputs'.
 2019-10-14 00:08:10 +02:00
Ludovic Courtès 8f417ed280
gnu: commencement: Further optimize the package object graph. 
For a package like:

  (define-public xxx
    (package
      (inherit (@ (gnu packages base) coreutils))
      (name "xxx")
      (inputs (@ (gnu packages commencement) %final-inputs))
      (native-inputs '())
      (propagated-inputs '())
      (arguments '(#:implicit-inputs? #f))))

this reduces the package object graph from 176 nodes (1852 edges) to 113
nodes (1114 edges).

The number of 'add-data-to-store' calls in "guix build coreutils -nd"
drops from 2045 to 1301, and the number of memoization tables drops from
102 to 40.

"guix build libreoffice -nd" goes from 2.40s to 2.27s.

* gnu/packages/commencement.scm (with-boot4): New variable.
(guile-final, glibc-utf8-locales-final): Use it.
(with-boot4, with-boot5): New variable.
(gnu-make-final): Rewrite to avoid 'package-with-explicit-inputs'.
(coreutils-final): Use 'with-boot5' instead of
'package-with-explicit-inputs'.
(grep-final): Likewise.
(with-boot6): New variable.
(sed-final, %final-inputs): Use it.
 2019-10-14 00:08:10 +02:00
Ludovic Courtès f618134e4c
build-system/gnu: 'package-with-explicit-inputs' uses 'package-mapping'. 
* guix/build-system/gnu.scm (package-with-explicit-inputs): Rename to...
(package-with-explicit-inputs/deprecated): ... this.
(package-with-explicit-inputs*): New procedure.
(package-with-explicit-inputs): Define as a 'case-lambda*'.
 2019-10-14 00:08:10 +02:00
Marius Bakke 64855281c1
gnu: librsvg: Update to 2.46.0. 
* gnu/packages/gnome.scm (librsvg-next): Update to 2.46.0.
[arguments]: Patch SHELL in "po/Makefile.in.in".
[native-inputs]: Replace RUST-1.27 with RUST-1.34.
 2019-10-13 22:49:16 +02:00
Marius Bakke e436379c94
gnu: expat: Replace with 2.2.9 [fixes CVE-2019-15903]. 
* gnu/packages/xml.scm (expat-2.2.9): New variable.
(expat)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke 24496210ea
gnu: libgcrypt: Replace with 1.8.5 [fixes CVE-2019-13627]. 
* gnu/packages/gnupg.scm (libgcrypt-1.8.5): New variable.
(libgcrypt)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke 046915dead
gnu: curl: Replace with 7.66.0 [fixes CVE-2019-5481, CVE-2019-5482]. 
* gnu/packages/curl.scm (curl-7.66.0): New variable.
(curl)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke cb867883ea
gnu: nghttp2: Replace with 1.39.2 [fixes CVE-2019-9511, CVE-2019-9513]. 
* gnu/packages/web.scm (nghttp2-1.39.2): New variable.
(nghttp2)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Marius Bakke d6718086f8
gnu: OpenSSL@1.0: Replace with 1.0.2t [fixes CVE-2019-1547, CVE-2019-1563]. 
* gnu/packages/tls.scm (openssl-1.0.2t): New variable.
(openssl-1.0)[replacement]: New field.
 2019-10-13 22:49:16 +02:00
Oleg Pykhalov 0475c88d6f
gnu: Add emacs-forge. 
* gnu/packages/emacs-xyz.scm (emacs-forge): New variable.
 2019-10-13 22:29:42 +03:00
Oleg Pykhalov 735a972eae
gnu: emacs-closql: Update to 1.0.0-1.70b98db. 
* gnu/packages/emacs-xyz.scm (emacs-closql): Update to 1.0.0-1.70b98db.
 2019-10-13 22:29:42 +03:00
Brian Leung 2485f17256
gnu: emacs-ghub: Update to 3.2.0-1.cf0b13a. 
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0-1.cf0b13a.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-10-13 22:29:42 +03:00
Oleg Pykhalov fd82f7ae9b
gnu: emacs-magit: Update to 2.90.1-2.c761d28. 
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 2.90.1-2.c761d28.
[arguments]: Add patch phase.
 2019-10-13 22:29:41 +03:00
Marius Bakke c2734ff809
gnu: ao: Update to 1.2.2-5-g20dc8ed [fixes CVE-2017-11548]. 
* gnu/packages/xiph.scm (ao): Update to 1.2.2-5-g20dc8ed.
[source]: Switch to GIT-FETCH.
[native-inputs]: Add AUTOCONF, AUTOMAKE and LIBTOOL.
 2019-10-13 18:35:59 +02:00
Marius Bakke c7adcb7cf8
gnu: ao: Specify CPE name. 
* gnu/packages/xiph.scm (ao)[properties]: New field.
 2019-10-13 18:35:59 +02:00
Marius Bakke 068d0a1c34
gnu: tcl: Update home page. 
* gnu/packages/tcl.scm (tcl)[home-page]: Use HTTPS.
 2019-10-13 18:35:59 +02:00
Marius Bakke a4a70cc4d7
gnu: util-linux: Adjust indentation. 
* gnu/packages/linux.scm (util-linux): Re-indent.
 2019-10-13 18:35:58 +02:00
Eric Bavier 0163b9002a
gnu: Add pragha. 
* gnu/packages/music.scm (pragha): New variable.
 2019-10-13 11:08:56 -05:00