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Author SHA1 Message Date
Kei Kebreau b7c19f2850
gnu: wxmaxima: Update to 21.02.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 21.02.0.
 2021-03-13 00:19:00 -05:00
Léo Le Bouter 373c7b5791
gnu: Remove bsdiff. 
As discussed in
<https://lists.gnu.org/archive/html/guix-devel/2021-03/msg00154.html>, remove
because of unpatched CVE-2020-14315 with no non-FreeBSD patch in sight.

* gnu/packages/compression.scm (bsdiff): Remove.
 2021-03-13 02:31:53 +01:00
Léo Le Bouter 77f1bd9dea
gnu: rust-diesel: Update to 1.4.6 [fixes CVE-2021-28305]. 
* gnu/packages/crates-io.scm (rust-diesel): Update to 1.4.6.
[native-inputs]: Add sqlite for tests.
[arguments]<#:cargo-inputs>: Remove rust-bigdecimal-0.2 (incompatible),
rust-libsqlite3-sys-0.15, rust-num-bigint-0.3 and rust-uuid-0.7. Add
rust-bigdecimal-0.1, rust-libsqlite3-sys-0.20, rust-num-bigint-0.2,
rust-uuid-0.5 and rust-uuid-0.8.
[arguments]<#:phases>: Replace 'check phase to provide required feature
arguments and  exclude failing 'expression::count::count' test.
[synopsis]: Solve lint error by removing article at the beginning.
 2021-03-13 02:07:28 +01:00
Léo Le Bouter 372a16e5c7
gnu: rust-dotenv-0.10: Fix build by adding missing cargo input. 
* gnu/packages/crates-io.scm (rust-dotenv-0.10)[arguments]<#:cargo-inputs>:
Add rust-syn-0.11.
 2021-03-13 02:04:29 +01:00
Léo Le Bouter 62b1ae7444
gnu: Add rust-bigdecimal-0.1. 
* gnu/packages/crates-io.scm (rust-bigdecimal-0.1): New variable.
 2021-03-13 02:04:28 +01:00
Tobias Geerinckx-Rice cad4aa667c
gnu: nginx-documentation: Update to 1.19.8-2673-4398fd0f0341. 
* gnu/packages/web.scm (nginx-documentation): Update to 1.19.8-2673-4398fd0f0341.
 2021-03-13 01:00:31 +01:00
Tobias Geerinckx-Rice c325099535
gnu: nginx: Update to 1.19.8. 
* gnu/packages/web.scm (nginx): Update to 1.19.8.
 2021-03-13 01:00:31 +01:00
Tobias Geerinckx-Rice 347cc54200
gnu: apache-thrift: Update to 0.14.1. 
* gnu/packages/rpc.scm (apache-thrift): Update to 0.14.1.
 2021-03-13 01:00:31 +01:00
Tobias Geerinckx-Rice fab02edde0
gnu: wireguard-tools: Update to 1.0.20210223. 
* gnu/packages/vpn.scm (wireguard-tools): Update to 1.0.20210223.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice deb8853243
gnu: eid-mw: Update to 5.0.14. 
* gnu/packages/security-token.scm (eid-mw): Update to 5.0.14.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice 1e71578c4a
gnu: micropython: Update to 1.14. 
* gnu/packages/python.scm (micropython): Update to 1.14.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice 4ddf56c136
gnu: libfreenect: Update to 0.6.2. 
* gnu/packages/openkinect.scm (libfreenect): Update to 0.6.2.
 2021-03-13 01:00:30 +01:00
Tobias Geerinckx-Rice 6862ae1a61
gnu: photoflare: Update to 1.6.7. 
* gnu/packages/photo.scm (photoflare): Update to 1.6.7.
 2021-03-13 01:00:30 +01:00
Greg Hogan bd0808f131
gnu: aws-sdk-cpp: Update to 1.8.159. 
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.8.159.
[arguments]: Build as shared library

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:55 +01:00
Greg Hogan 9719084535
gnu: aws-c-event-stream: Update to 0.2.7. 
* gnu/packages/c.scm (aws-c-event-stream): Update to 0.2.7.
[arguments]: Build as shared library.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:55 +01:00
Greg Hogan 8ea7b6f91e
gnu: Add aws-c-io. 
* gnu/packages/c.scm (aws-c-io): New variable.
* gnu/packages/patches/aws-c-io-cmake-prefix.patch,
gnu/packages/patches/aws-c-io-disable-networking-tests.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan 1b51888863
gnu: Add s2n. 
* gnu/packages/tls.scm (s2n): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan 748e2ec07a
gnu: Add aws-c-cal. 
* gnu/packages/c.scm (aws-c-cal): New variable.
* gnu/packages/patches/aws-c-cal-cmake-prefix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan cc95d03ec7
gnu: aws-checksums: Build as shared library. 
* gnu/packages/c.scm (aws-checksums)[arguments]: Build as shared library.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Greg Hogan 9d541e97e9
gnu: aws-c-common: Update to 0.5.2. 
* gnu/packages/c.scm (aws-c-common): Update to 0.5.2.
[arguments]: Build as shared library.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-03-12 23:58:54 +01:00
Leo Famulari bb5d84a048
gnu: ImageMagick: Fix version number in build configuration of grafted replacement. 
Fixes <https://bugs.gnu.org/47110>.

This is a followup to commits 852ba914a4 and
82e887ba48.

* gnu/packages/imagemagick.scm (imagemagick/fixed)[name, arguments]: New
fields.
 2021-03-12 14:41:17 -05:00
Leo Famulari a39faf1abd
gnu: OpenSSL: Fix version number in build configuration. 
Fixes <https://bugs.gnu.org/47108>.

This is a followup to commit 4a8b529ce1.

* gnu/packages/tls.scm (openssl/fixed)[arguments]: New field.
 2021-03-12 14:22:21 -05:00
Leo Famulari 35b3ab8e57
gnu: libtiff: Fix documentation directory name in grafted replacement. 
Fixes <https://bugs.gnu.org/47107>.

This is a followup to commit 6320700b11.

* gnu/packages/image.scm (libtiff/fixed)[name, arguments]: New fields.
 2021-03-12 14:10:31 -05:00
Nicolas Goaziou a5a5ec5603
gnu: nushell: Update to 0.28.0. 
* gnu/packages/shells.scm (nushell):
(rust-nu-cli-0.28):
(rust-nu-command-0.28):
(rust-nu-data-0.28):
(rust-nu-engine-0.28):
(rust-nu-errors-0.28):
(rust-nu-json-0.28):
(rust-nu-plugin-0.28):
(rust-nu-plugin-binaryview-0.28):
(rust-nu-plugin-chart-0.28):
(rust-nu-plugin-fetch-0.28):
(rust-nu-plugin-from-sqlite-0.28):
(rust-nu-plugin-inc-0.28):
(rust-nu-plugin-match-0.28):
(rust-nu-plugin-post-0.28):
(rust-nu-plugin-ps-0.28):
(rust-nu-plugin-s3-0.28):
(rust-nu-plugin-sys-0.28):
(rust-nu-plugin-textview-0.28):
(rust-nu-plugin-to-bson-0.28):
(rust-nu-plugin-to-sqlite-0.28):
(rust-nu-plugin-tree-0.28):
(rust-nu-plugin-xpath-0.28):
(rust-nu-protocol-0.28):
(rust-nu-source-0.28):
(rust-nu-stream-0.28):
(rust-nu-test-support-0.28):
(rust-nu-value-ext-0.28): Update to 0.28.0.
(rust-nu-ansi-term-0.28): New variable.
 2021-03-12 16:09:37 +01:00
Nicolas Goaziou 56613cc619
gnu: Add rust-minus-3. 
* gnu/packages/crates-io.scm (rust-minus-3): New variable.
 2021-03-12 16:09:37 +01:00
Nicolas Goaziou 1fcaac7941
gnu: rust-surf-2: Update to 2.2.0. 
* gnu/packages/crates-io.scm (rust-surf-2): Update to 2.2.0.
 2021-03-12 16:09:37 +01:00
Nicolas Goaziou 7d29bfd567
gnu: rust-http-client-6: Update to 6.3.4. 
* gnu/packages/crates-io.scm (rust-http-client-6): Update to 6.3.4.
 2021-03-12 16:09:36 +01:00
Nicolas Goaziou 10a1ab0d26
gnu: Add rust-async-tls-0.10. 
* gnu/packages/crates-io.scm (rust-async-tls-0.10): New variable.
 2021-03-12 16:09:36 +01:00
Nicolas Goaziou 6fe6ab50bd
gnu: rust-webpki-0.21: Update to 0.21.4. 
* gnu/packages/crates-io.scm (rust-webpki-0.21): Update to 0.21.4.
 2021-03-12 16:09:36 +01:00
Nicolas Goaziou a7c8060360
gnu: rust-ring-0.16: Update to 0.16.20. 
* gnu/packages/crates-io.scm (rust-ring-0.16): Update to 0.16.20.
[arguments]: Skip tests.
 2021-03-12 16:09:35 +01:00
Nicolas Goaziou 0f0589b8cd
gnu: Add rust-deadpool-0.7. 
* gnu/packages/crates-io.scm (rust-deadpool-0.7): New variable.
 2021-03-12 16:09:35 +01:00
Nicolas Goaziou b89714b40a
gnu: rust-url-2: Update to 2.2.1. 
* gnu/packages/crates-io.scm (rust-url-2): Update to 2.2.1.
 2021-03-12 16:09:09 +01:00
Ludovic Courtès a04aef2430
utils: Use Guile-zlib for gzip compression and decompression. 
Fixes <https://bugs.gnu.org/46967>.

* guix/utils.scm (decompressed-port): Call 'make-zlib-input-port'
instead of invoking %GZIP.
(compressed-output-port): Call 'make-zlib-output-port' instead of
invoking %GZIP.
* doc/guix.texi (Requirements): Require Guile-zlib >= 0.1.0.
 2021-03-12 15:59:46 +01:00
Ludovic Courtès 97b45977f4
gnu: guile-zlib: Update to 0.1.0. 
* gnu/packages/guile.scm (guile-zlib): Update to 0.1.0.
 2021-03-12 15:59:45 +01:00
Sharlatan Hellseher 2e5ac371e7
gnu: Add sbcl-stumpwm-disk. 
* gnu/packages/wm.scm: (sbcl-stumpwm-disk): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-12 15:06:51 +01:00
Sharlatan Hellseher 77ee8af58c
gnu: stumpwm-contrib: Update to 0.0.1-3.a7dc1c. 
* gnu/packages/wm.scm (stumpwm-contrib): Update to 0.0.1-3.a7dc1c.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-03-12 15:06:51 +01:00
Guillaume Le Vaillant a56b331e07
gnu: Add gnuais. 
* gnu/packages/radio.scm (gnuais): New variable.
 2021-03-12 15:06:50 +01:00
zimoun df6b3c25bb
gnu: r-systempiper: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-systempiper): Move from here...
* gnu/packages/bioconductor.scm (r-systempiper): ...to here.
 2021-03-12 14:45:55 +01:00
zimoun 8957efa8ef
gnu: r-shortread: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-shortread): Move from here...
* gnu/packages/bioconductor.scm (r-shortread): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun 2a97057688
gnu: r-gostats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gostats): Move from here...
* gnu/packages/bioconductor.scm (r-gostats): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun 4e7cf96c9f
gnu: r-category: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-category): Move from here...
* gnu/packages/bioconductor.scm (r-category): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun 031fdda47a
gnu: r-gseabase: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-gseabase): Move from here...
* gnu/packages/bioconductor.scm (r-gseabase): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun f44079bc21
gnu: r-rbgl: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rbgl): Move from here...
* gnu/packages/bioconductor.scm (r-rbgl): ...to here.
 2021-03-12 14:45:54 +01:00
zimoun ff92c2873c
gnu: r-annotationforge: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here...
* gnu/packages/bioconductor.scm (r-annotationforge): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun d769b10714
gnu: r-dexseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun 373545855d
gnu: r-deseq2: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-deseq2): Move from here...
* gnu/packages/bioconductor.scm (r-deseq2): ...to here.
 2021-03-12 14:45:53 +01:00
zimoun a35ea5fed9
gnu: r-genefilter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-genefilter): Move from here...
* gnu/packages/bioconductor.scm (r-genefilter): ...to here.
 2021-03-12 14:45:53 +01:00
Ricardo Wurmus 323aec6ad9
gnu: r-bioassayr: Update home page. 
* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent
redirect.
 2021-03-12 14:41:15 +01:00
zimoun 2528cad451
gnu: r-bioassayr: Update to 1.28.2. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2.
 2021-03-12 14:41:14 +01:00
zimoun 8c8d365ca3
gnu: r-chemminer: Update to 3.42.2. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2.
 2021-03-12 14:41:14 +01:00