gnu: r-dexseq: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-dexseq): Move from here... * gnu/packages/bioconductor.scm (r-dexseq): ...to here.
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@ -1525,6 +1525,51 @@ (define-public r-deseq2
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distribution.")
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(license license:lgpl3+)))
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(define-public r-dexseq
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(package
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(name "r-dexseq")
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(version "1.36.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DEXSeq" version))
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(sha256
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(base32
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"0wfjb42xcr4wjy8a654b74411dky8hp6sp8xdwf0sxqgsxy106qi"))))
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(properties `((upstream-name . "DEXSeq")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biomart" ,r-biomart)
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("r-deseq2" ,r-deseq2)
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("r-genefilter" ,r-genefilter)
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("r-geneplotter" ,r-geneplotter)
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("r-genomicranges" ,r-genomicranges)
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("r-hwriter" ,r-hwriter)
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("r-iranges" ,r-iranges)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-statmod" ,r-statmod)
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("r-stringr" ,r-stringr)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/DEXSeq")
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(synopsis "Inference of differential exon usage in RNA-Seq")
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(description
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"This package is focused on finding differential exon usage using RNA-seq
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exon counts between samples with different experimental designs. It provides
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functions that allows the user to make the necessary statistical tests based
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on a model that uses the negative binomial distribution to estimate the
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variance between biological replicates and generalized linear models for
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testing. The package also provides functions for the visualization and
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exploration of the results.")
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(license license:gpl3+)))
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(define-public r-genefilter
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(package
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(name "r-genefilter")
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@ -7387,51 +7387,6 @@ (define-public r-demultiplex
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")
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(license license:cc0))))
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(define-public r-dexseq
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(package
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(name "r-dexseq")
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(version "1.36.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DEXSeq" version))
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(sha256
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(base32
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"0wfjb42xcr4wjy8a654b74411dky8hp6sp8xdwf0sxqgsxy106qi"))))
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(properties `((upstream-name . "DEXSeq")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biomart" ,r-biomart)
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("r-deseq2" ,r-deseq2)
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("r-genefilter" ,r-genefilter)
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("r-geneplotter" ,r-geneplotter)
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("r-genomicranges" ,r-genomicranges)
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("r-hwriter" ,r-hwriter)
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("r-iranges" ,r-iranges)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-statmod" ,r-statmod)
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("r-stringr" ,r-stringr)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/DEXSeq")
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(synopsis "Inference of differential exon usage in RNA-Seq")
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(description
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"This package is focused on finding differential exon usage using RNA-seq
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exon counts between samples with different experimental designs. It provides
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functions that allows the user to make the necessary statistical tests based
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on a model that uses the negative binomial distribution to estimate the
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variance between biological replicates and generalized linear models for
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testing. The package also provides functions for the visualization and
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exploration of the results.")
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(license license:gpl3+)))
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(define-public r-annotationforge
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(package
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(name "r-annotationforge")
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