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Author SHA1 Message Date
Efraim Flashner a662e4ce5e
gnu: Add rust-block-buffer-0.9. 
* gnu/packages/crates-io.scm (rust-block-buffer-0.9): New variable.
(rust-block-buffer-0.7): Inherit from rust-block-buffer-0.9.
 2020-06-28 14:59:28 +03:00
Efraim Flashner 3bb18715a9
gnu: Add rust-digest-0.9. 
* gnu/packages/crates-io.scm (rust-digest-0.9): New variable.
(rust-digest-0.8): Inherit from rust-digest-0.9.
 2020-06-28 14:59:28 +03:00
Efraim Flashner 526badd606
gnu: Add rust-crypto-mac-0.8. 
* gnu/packages/crates-io.scm (rust-crypto-mac-0.8): New variable.
(rust-crypto-mac-0.7): Inherit from rust-crypto-mac-0.8.
 2020-06-28 14:59:28 +03:00
Efraim Flashner a825365538
gnu: rust-generic-array-0.13: Don't skip build. 
* gnu/packages/crates-io.scm (rust-generic-array-0.13)[arguments]: Don't
skip build.
(rust-generic-array-0.12)[arguments]: Same.
 2020-06-28 14:59:28 +03:00
Efraim Flashner 7d9231bb24
gnu: Add rust-generic-array-0.14. 
* gnu/packages/crates-io.scm (rust-generic-array-0.14): New variable.
(rust-generic-array-0.13): Inherit from rust-generic-array-0.14.
 2020-06-28 14:59:27 +03:00
Efraim Flashner 61521e1a7a
gnu: Add rust-subtle-2. 
* gnu/packages/crates-io.scm (rust-subtle-2): New variable.
(rust-subtle-1.0): Inherit from rust-subtle-2.
 2020-06-28 14:59:27 +03:00
Efraim Flashner 16f9571234
gnu: rust-block-padding-0.1: Don't skip build. 
* gnu/packages/crates-io.scm (rust-block-padding-0.1)[arguments]: Don't
skip build.
 2020-06-28 14:59:27 +03:00
Efraim Flashner e49c34b418
gnu: Add rust-block-padding-0.2. 
* gnu/packages/crates-io.scm (rust-block-padding-0.2): New variable.
(rust-block-padding-0.1): Inherit from rust-block-padding-0.2.
 2020-06-28 14:59:27 +03:00
Efraim Flashner dd27c276a2
gnu: Add rust-cpuid-bool-0.1. 
* gnu/packages/crates-io.scm (rust-cpuid-bool-0.1): New variable.
 2020-06-28 14:59:27 +03:00
Efraim Flashner 94b03f82c8
gnu: Add rust-opaque-debug-0.3. 
* gnu/packages/crates-io.scm (rust-opaque-debug-0.3): New variable.
(rust-opaque-debug-0.2): Inherit from rust-opaque-debug-0.3.
 2020-06-28 14:59:26 +03:00
Brice Waegeneire b9edefbc46
.gitignore: Ignore 'etc/committer.scm'. 
* .gitignore: Add '/etc/committer.scm'.
 2020-06-28 13:28:25 +02:00
Brice Waegeneire e39b2363f5
doc: Add progress display in 'dd' command lines. 
* doc/guix.texi (System Installation): Adjust 'dd' command line to
display progress …
(System Configuration): … same here.
 2020-06-28 13:28:06 +02:00
André Batista f8945734a5
doc: cookbook: Update entry about getting substitutes through Tor. 
* doc/guix-cookbook.texi (Getting substitutes from Tor): Update
section warning to mention the use of torsocks when pulling.
 2020-06-28 13:26:14 +02:00
Efraim Flashner 8f19e63f76
services: Add rshiny service. 
* gnu/services/science.scm: New file.
(<rshiny-configuration>): New record.
(rshiny-shepherd-service-type): New variable.
* doc/guix.texi (Miscellaneous Services): Document it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2020-06-28 14:03:03 +03:00
Simon South 0dfc461272
gnu: emacs-nov-el: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-06-28 10:51:44 +03:00
Simon South 4cd2dfd9f4
gnu: emacs-nov-el: Use version tag instead of commit. 
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Remove let binding and associated
comment; correct indentation.
[source]: Use version tag as commit identifier now that upstream has restored
this information.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-06-28 10:51:40 +03:00
Efraim Flashner 5e5bcba295
gnu: r-qtl2: Update synopsis, description. 
* gnu/packages/bioinformatics.scm (r-qtl2)[synopsis]: Use upstream's
synopsis.
[description]: Same.
 2020-06-28 10:18:47 +03:00
Efraim Flashner 54bb476670
gnu: r-qtl2: Update to 0.22-8. 
* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-8.
[source]: Download from cran.
 2020-06-28 10:15:21 +03:00
Efraim Flashner 1ab5e5b9a1
gnu: Add rust-scrypt-0.2. 
* gnu/packages/crates-io.scm (rust-scrypt-0.2): New variable.
 2020-06-28 08:51:07 +03:00
Efraim Flashner add00a7686
gnu: Add rust-pbkdf2-0.3. 
* gnu/packages/crates-io.scm (rust-pbkdf2-0.3): New variable.
 2020-06-28 08:50:15 +03:00
Efraim Flashner a8b83c6c44
gnu: Add rust-hmac-0.7. 
* gnu/packages/crates-io.scm (rust-hmac-0.7): New variable.
 2020-06-28 08:49:24 +03:00
Efraim Flashner 096a712e42
gnu: Add rust-md-5-0.8. 
* gnu/packages/crates-io.scm (rust-md-5-0.8): New variable.
 2020-06-28 08:48:18 +03:00
Efraim Flashner 8e0767b985
gnu: Add rust-md5-asm-0.4. 
* gnu/packages/crates-io.scm (rust-md5-asm-0.4): New variable.
 2020-06-28 08:44:57 +03:00
Eric Bavier 1e7acfb8ab
gnu: emacs-idris-mode: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-idris-mode): Update to 1.0.
[description]: Mention compatibility with Idris 1.
 2020-06-27 23:06:53 -05:00
Ricardo Wurmus ea33de6d70
gnu: r-fpc: Update to 2.2-7. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-7.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus ef20f8305c
gnu: r-openssl: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.2.
[native-inputs]: Add r-knitr.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus e07fc640cf
gnu: r-roxygen2: Update to 7.1.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.1.
[native-inputs]: Add r-knitr.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus f8c999152e
gnu: r-directlabels: Update to 2020.6.17. 
* gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17.
[native-inputs]: Add r-knitr.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus e9f02d72d3
gnu: r-rgdal: Update to 1.5-12. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-12.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus 6bbb287a60
gnu: r-flexdashboard: Update to 0.5.2. 
* gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2.
[source]: Delete minified JavaScript files in a snippet.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus 53ba82dda1
gnu: r-rcppparallel: Update to 5.0.2. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus 53fd3d5a8f
gnu: r-emmeans: Update to 1.4.8. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.8.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus 6c8b60acc9
gnu: r-raster: Update to 3.3-7. 
* gnu/packages/cran.scm (r-raster): Update to 3.3-7.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus bfaf6cf1f9
gnu: r-sjlabelled: Update to 1.1.6. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus e34f98a4a6
gnu: r-officer: Update to 0.3.12. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.12.
 2020-06-28 05:46:20 +02:00
Ricardo Wurmus 0d742a0523
gnu: r-ggpubr: Update to 0.4.0. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0.
 2020-06-28 05:46:19 +02:00
Ricardo Wurmus 308d91d886
gnu: r-renv: Update to 0.11.0. 
* gnu/packages/cran.scm (r-renv): Update to 0.11.0.
 2020-06-28 05:46:19 +02:00
Ricardo Wurmus 6b9954f649
gnu: r-jsonlite: Update to 1.7.0. 
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.0.
[native-inputs]: Add r-knitr.
 2020-06-28 05:46:19 +02:00
Ricardo Wurmus fb4804d03d
gnu: r-scater: Update to 1.16.2. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.2.
 2020-06-28 05:46:19 +02:00
Ricardo Wurmus e66f81cf63
gnu: r-biocviews: Update to 1.56.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.1.
 2020-06-28 05:46:19 +02:00
Ricardo Wurmus fa7871af77
gnu: r-dexseq: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.1.
 2020-06-28 05:46:19 +02:00
Tobias Geerinckx-Rice 4a498d0012
gnu: dropbear: Update to 2020.80 [fix for CVE-2018-20685]. 
* gnu/packages/ssh.scm (dropbear): Update to 2020.80.
 2020-06-27 23:50:56 +02:00
André Batista 0b7c540032
gnu: lxqt: Update to 0.15.0. 
* gnu/packages/lxqt.scm
(libstatgrab): Update to 0.92.
(lxqt-build-tools): Update to 0.7.0.
(libqtxdg): Update to 3.5.0.
(liblxqt): Update to 0.15.1.
(libsysstat): Update to 0.4.3.
(lxqt-about): Update to 0.15.0.
(lxqt-admin): Update to 0.15.0.
(lxqt-config): Update to 0.15.0.
(lxqt-globalkeys): Update to 0.15.0.
(lxqt-notificationd): Update to 0.15.0.
(lxqt-openssh-askpass): Update to 0.15.0.
(lxqt-panel): Update to 0.15.1.
(lxqt-policykit): Update to 0.15.0.
(lxqt-powermanagement): Update to 0.15.0.
(lxqt-qtplugin): Update to 0.15.1.
(lxqt-runner): Update to 0.15.0.
(lxqt-session): Update to 0.15.0.
(lxqt-sudo): Update to 0.15.0.
(lxqt-themes): Update to 0.15.0.
(libfm-qt): Update to 0.15.1.
(pcmanfm-qt): Update to 0.15.1.
(compton-conf): Update to 0.15.0.
(lximage-qt): Update to 0.15.0.
(obconf-qt): Update to 0.15.0.
(pavucontrol-qt): Update to 0.15.0.
(qps): Update to 2.1.0.
(qps)[inputs]: Add kwindowsystem, liblxqt and libqtxdg.
(qtermwidget): Update to 0.15.0.
(qterminal): Update to 0.15.0.
(screengrab): Update to 2.0.1.
(lxqt-archiver): Update to 0.2.0.
(lxqt-archiver)[origin]: Use tarball release.
(lxqt-connman-applet): Update to 0.15.0.
(lxqt-connman-applet)[arguments]: Add new patch phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-27 23:42:21 +02:00
Timotej Lazar 8a35ffd8ad
gnu: libtiff: Use HTTPS. 
* gnu/packages/image.scm (libtiff)[source]: Use HTTPS.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-27 23:42:21 +02:00
Ludovic Courtès 0505eda9c7
packages: Recognize SHA3 and BLAKE2s for 'content-hash'. 
* guix/packages.scm (build-content-hash): Add 'sha3-256', 'sha3-512',
and 'blake2s-256'.
* tests/packages.scm ("package-source-derivation, origin, sha3-512"):
New test.
 2020-06-27 23:42:20 +02:00
Ludovic Courtès 8e6c1415d8
daemon: Recognize SHA3 and BLAKE2s. 
* nix/libutil/hash.hh (HashType): Add htSHA3_256, htSHA3_512, and
htBLAKE2s_256.
* nix/libutil/hash.cc (parseHashType, printHashType): Recognize them.
* tests/store.scm ("add-to-store"): Test these algorithms.
 2020-06-27 23:42:20 +02:00
Ludovic Courtès 8dc6c38785
daemon: Remove OpenSSL hash compatibility wrappers. 
* nix/libutil/hash.cc (struct Ctx): Copy from gcrypt-hash.hh.
(start, update, finish): Use gcrypt functions directly instead of
OpenSSL-like wrappers.
* nix/libutil/gcrypt-hash.cc, nix/libutil/gcrypt-hash.hh,
nix/libutil/md5.h, nix/libutil/sha1.h, nix/libutil/sha256.h,
nix/libutil/sha512.h: Remove.
* nix/local.mk (libutil_a_SOURCES, libutil_headers): Adjust
accordingly.
 2020-06-27 23:42:20 +02:00
Ludovic Courtès 3fb6b8f304
daemon: Map directly to gcrypt hash functions. 
* nix/libutil/hash.hh (HashType): Map directly to GCRY_MD_ values.
(md5HashSize, sha1HashSize, sha256HashSize, sha512HashSize): Remove.
* nix/libutil/hash.cc (Hash::Hash): Use 'gcry_md_get_algo_dlen'.
 2020-06-27 23:42:20 +02:00
Ludovic Courtès 4b4f890cb0
bash completion: Complete 'guix environment' properly. 
* etc/completion/bash/guix (_guix_complete): Add case for "guix environment".
 2020-06-27 23:42:20 +02:00
Tobias Geerinckx-Rice 5c10200b54
gnu: Add autofs. 
* gnu/packages/file-systems.scm (autofs): New public variable.

Co-authored-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-06-27 23:28:58 +02:00