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Author SHA1 Message Date
Brice Waegeneire 9ef37e81d6
system: Export 'operating-system' missing fields. 
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-08 21:21:57 +01:00
Ludovic Courtès 1a30351bf3
gnu: guile-next: Update to 3.0.1. 
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1.  Use "mirror://" URL.
 2020-03-08 21:21:57 +01:00
Mathieu Othacehe 9a2f99f42f
gexp: Default to current target. 
* guix/gexp.scm (lower-object): Set target argument to 'current by default and
look for the current target system at bind time if needed,
(gexp->file): ditto,
(gexp->script): ditto,
(lower-gexp): make sure lowered extensions are not cross-compiled.

* tests/gexp.scm: Add cross-compilation test-cases for gexp->script and
gexp->file with a target passed explicitely and with a default target.
 2020-03-08 20:28:31 +01:00
Mathieu Othacehe 5d52d10661
store: Add set-current-target procedure. 
* guix/store.scm (set-current-target): New exported procedure.
 2020-03-08 20:28:31 +01:00
Ricardo Wurmus c32897b6e4
gnu: r-robust: Update to 0.5-0.0. 
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus 7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Hartmut Goebel 6434f9b634
gnu: Reword and extend descriptions for some KDE packages. 
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
  kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
  kontactinterface, kpimtextedit)[description]: Reword and extend.
  (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
  (kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
 2020-03-08 14:06:00 +01:00
Martin Becze 1eb3b2b666
gnu: Add emacs-org-journal. 
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
 2020-03-08 11:19:16 +01:00
Roel Janssen e2ca10a46f
gnu: python-umap-learn: Fix build. 
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
 2020-03-08 10:20:22 +01:00
Maxim Cournoyer 5fdc5b2d57
services: nfs: Run rpc.mountd in foreground. 
Fixes <https://bugs.gnu.org/39708>.

Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.

* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
 2020-03-08 00:26:02 -05:00
Leo Famulari be3908fa14
gnu: QEMU: Fix CVE-2020-8608. 
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
 2020-03-07 16:37:25 -05:00
Lars-Dominik Braun 83ac7cb42b
gnu: brotli: Remove package 
Same package is provided by google-brotli.

* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Lars-Dominik Braun d9476a3700
gnu: woff2: Update to 1.0.2 
* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake
* gnu/packages/patches/woff2-libbrotli.patch: Remove
* gnu/local.mk (dist_patch_DATA): Remove patch

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll 74ff08e6b8
gnu: ccache: Fix indentation 
* gnu/packages/ccache.scm (ccache): Fix indentation

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Vincent Legoll 9eb456b8c7
gnu: ccache: Update to 3.7.7. 
gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage
to ccache.dev, get source code from github, remove fortran 77 from
description.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-07 22:30:06 +01:00
Ludovic Courtès 24a4a635fd
gnu: eudev: Add variant with corrected Btrfs rules. 
Discussed at <https://bugs.gnu.org/39926>.

* gnu/packages/linux.scm (eudev/btrfs-fix): New variable.
* gnu/services/base.scm (<udev-configuration>)[udev]: Default to it.
(udev-service): Likewise for #:udev.
 2020-03-07 22:30:00 +01:00
Ludovic Courtès 8ab060b68b
gnu: guile: Add 2.2.7. 
* gnu/packages/guile.scm (guile-2.2.7): New variable.
(guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7.
* gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7.
* gnu/packages/patches/guile-finalization-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-03-07 22:29:44 +01:00
Nicolas Goaziou 2519e4cba8
gnu: emacs-xr: Update to 1.17. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
 2020-03-07 21:42:45 +01:00
Nicolas Goaziou f61b980f5d
gnu: emacs-relint: Update to 1.15. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
 2020-03-07 21:41:06 +01:00
Ricardo Wurmus 1c9e3e9f36
gnu: r-dplyr: Update to 0.8.5. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:55 +01:00
Ricardo Wurmus 667f799641
gnu: r-survival: Update to 3.1-11. 
* gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
 2020-03-07 20:03:43 +01:00
Ricardo Wurmus d8545835bd
gnu: r-lifecycle: Update to 0.2.0. 
* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:32 +01:00
Ricardo Wurmus a97c648c61
gnu: r-covr: Update to 3.5.0. 
* gnu/packages/cran.scm (r-covr): Update to 3.5.0.
[native-inputs]: Add r-knitr.
 2020-03-07 20:03:21 +01:00
Ricardo Wurmus 4882fcd292
gnu: r-pscl: Update to 1.5.5. 
* gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
 2020-03-07 20:03:11 +01:00
Ricardo Wurmus 15d3ac75ce
gnu: r-mosaic: Add r-knitr. 
* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:52 +01:00
Ricardo Wurmus c68c7e2fbf
gnu: r-insight: Update to 0.8.2. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.2.
[native-inputs]: Add r-knitr.
 2020-03-07 20:02:35 +01:00
Ricardo Wurmus 491ce4f083
gnu: r-heatmaply: Add r-knitr. 
* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr.
 2020-03-07 20:02:14 +01:00
Ricardo Wurmus d56553edc3
gnu: r-methylkit: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr.
 2020-03-07 19:42:34 +01:00
Ricardo Wurmus 06fc1882f2
gnu: r-ggrepel: Add r-knitr. 
* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr.
 2020-03-07 19:38:31 +01:00
Ricardo Wurmus c363722e81
import/cran: Add vignette builder to native inputs. 
* guix/import/cran.scm (needs-knitr?): New procedure.
(description->package): Use it.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus 67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus 56bf00b94e
gnu: r-viridis: Add r-knitr. 
* gnu/packages/statistics.scm (r-viridis)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Ricardo Wurmus 3b7c644569
gnu: r-vsn: Add r-knitr. 
* gnu/packages/bioinformatics.scm (r-vsn)[native-inputs]: Add r-knitr.
 2020-03-07 19:31:46 +01:00
Michael Rohleder 9eed0a74f9
fd: Install bash completion properly. 
* gnu/packages/rust-apps.scm (fd)[arguments]: Replace
  the dash in "bash-completion.d" with an underscore.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 18:32:27 +01:00
Robert Smith 880a316591
gnu: anki: Fix mpv audio playback 
* gnu/packages/patches/anki-mpv-args.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/education.scm (anki): Adjust accordingly, wrap anki's
  PATH to include mpv executable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 17:29:34 +01:00
Pierre Neidhardt 262d6ed465
gnu: next: Fix build with SBCL 2.0.2. 
* gnu/packages/web-browsers.scm (next)[arguments]: Fix lambda-list type error
  on SBCL 2.0.2.
 2020-03-07 17:12:35 +01:00
Tobias Geerinckx-Rice 322ea25c56
gnu: s6-rc: Update to 0.5.1.2. 
* gnu/packages/skarnet.scm (s6-rc): Update to 0.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice 072102f651
gnu: s6-portable-utils: Update to 2.2.2.2. 
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.2.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice 82853fbf8c
gnu: s6-networking: Update to 2.3.1.2. 
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice 5cecf3f4e2
gnu: s6-linux-utils: Update to 2.5.1.2. 
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.5.1.2.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice 1d57075049
gnu: scm: Update to 5f3. 
* gnu/packages/scheme.scm (scm): Update to 5f3.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice db34ab7350
gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec 3592]. 
https://support.ntp.org/bin/view/Main/SecurityNotice#Recent_Vulnerabilities

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p14.
 2020-03-07 16:04:20 +01:00
Tobias Geerinckx-Rice e4a9f135f7
gnu: ntp: Use HTTPS in metadata URIs 
* gnu/packages/ntp.scm (ntp)[home-page, license]: Use HTTPS.
 2020-03-07 16:04:20 +01:00
Vincent Legoll e7ba60ddce
gnu: unbound: Update to 1.10.0. 
* gnu/packages/dns.scm (unbound): Update to 1.10.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-03-07 14:51:37 +01:00
Vincent Legoll 4c8b874f95
gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597]. 
* gnu/packages/samba.scm (ppp): Update to 2.4.8-1.8d45443.
Use GIT-FETCH and GIT-FILE-NAME.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-03-07 14:27:06 +01:00
Tobias Geerinckx-Rice 4f236f84a9
gnu: Use HTTPS for commons.apache.org home pages. 
* gnu/packages/java.scm (java-commons-io, java-commons-logging-minimal)
(java-commons-math3, java-commons-jxpath, java-commons-daemon)
(java-commons-net, java-commons-vfs, java-commons-beanutils)
(java-commons-lang, java-commons-lang3)[home-page]:Use HTTPS.
 2020-03-07 12:48:19 +01:00