TakeV/guix
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
63959 commits 102 branches 35 tags 561 MiB
Commit graph

63959 commits

This branch
This branch
All branches
Author SHA1 Message Date
Ricardo Wurmus
ba663a331b
gnu: Add r-conquer. 
* gnu/packages/cran.scm (r-conquer): New variable.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
021ad446fc
gnu: r-cairo: Update to 1.5-12.2. 
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.2.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
79f7cd99da
gnu: r-gplots: Update to 3.0.4. 
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.4.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:05 +02:00
Ricardo Wurmus
f12fd76912
gnu: r-xml: Update to 3.99-0.4. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.4.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
f7b05fb978
gnu: r-tibble: Update to 3.0.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.2.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
59b88ab39e
gnu: r-svglite: Update to 1.2.3.2. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.3.2.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
0091d815ad
gnu: r-rstan: Update to 2.21.1. 
* gnu/packages/cran.scm (r-rstan): Update to 2.21.1.
[propagated-inputs]: Add r-rcppparallel and r-v8.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
67462c7be9
gnu: r-loo: Update to 2.3.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.3.0.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
3cafe807b2
gnu: r-rstantools: Update to 2.1.1. 
* gnu/packages/cran.scm (r-rstantools): Update to 2.1.1.
[propagated-inputs]: Add r-rcppparallel.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
8aff0a206c
gnu: r-iheatmapr: Update to 0.5.0. 
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.0.
[propagated-inputs]: Remove r-plyr and r-s4vectors.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
e9d906748d
gnu: r-quanteda: Update to 2.1.0. 
* gnu/packages/cran.scm (r-quanteda): Update to 2.1.0.
[propagated-inputs]: Add r-digest.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
ed8c14589c
gnu: r-nonnest2: Update to 0.5-5. 
* gnu/packages/cran.scm (r-nonnest2): Update to 0.5-5.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
215475907a
gnu: r-future: Update to 1.18.0. 
* gnu/packages/cran.scm (r-future): Update to 1.18.0.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
e1bfb22e6c
gnu: r-doby: Update to 4.6.7. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.7.
[propagated-inputs]: Add r-dplyr and r-ggplot2.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
fbd4582a91
gnu: r-cubature: Update to 2.0.4.1. 
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.1.
[native-inputs]: Add r-knitr.
 2020-07-16 10:08:04 +02:00
Ricardo Wurmus
1fdd9ebf77
gnu: r-getoptlong: Update to 1.0.2. 
* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
1b5c263bfc
gnu: r-rcpp: Update to 1.0.5. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.5.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
b80f141f86
gnu: r-delayedmatrixstats: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.1.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
15597255e6
gnu: r-rhdf5: Update to 2.32.2. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
2d9c897dd0
gnu: r-variancepartition: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2.
 2020-07-16 10:08:03 +02:00
Ricardo Wurmus
f5340e0045
gnu: Add tao. 
* gnu/packages/patches/tao-add-missing-headers.patch,
gnu/packages/patches/tao-fix-parser-types.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (tao): New variable.
 2020-07-16 10:07:57 +02:00
Tobias Geerinckx-Rice
03f9a8c35b
Revert "gnu: rust: Add SSL native search paths." 
This reverts commit ba1e4ce256.
 2020-07-15 23:22:18 +02:00
Leo Famulari
7233b19fde
gnu: Transmission: Update to 3.0.0. 
* gnu/packages/bittorrent.scm (transmission): Update to 3.0.0.
[source]: Remove obsolete patch.
* gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-07-15 15:38:03 -04:00
Oleg Pykhalov
37fea3c30a
tests: zabbix: Fix typo in comment. 
* gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Fix typo in
comment.
 2020-07-15 22:15:50 +03:00
Oleg Pykhalov
be6835765b
gnu: zabbix-agentd: Update to 5.0.1. 
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.0.1.
(arguments)[#:phases]<install-front-end>: Update front-end path.
 2020-07-15 22:15:49 +03:00
Tobias Geerinckx-Rice
209bfe60ee
gnu: bind: Update to 9.16.5. 
* gnu/packages/dns.scm (isc-bind): Update to 9.16.5.
 2020-07-15 21:11:11 +02:00
Marius Bakke
1507636906
gnu: python-tinycss2: Fix test failure. 
Fixes <https://bugs.gnu.org/42372>.
Reported by Michael Rohleder <mike@rohleder.de>.

* gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
 2020-07-15 20:29:26 +02:00
Marius Bakke
dec0217f6e
gnu: python-shiboken-2, python-pyside-2: Update to 5.14.2.3. 
* gnu/packages/patches/qtbase-absolute-runpath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/qt.scm (qtbase/next): New variable.
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.14.2.3.
[source](uri): Adjust for tarball rename.
[inputs]: Use the default CLANG-TOOLCHAIN.
(python-pyside-2)[inputs]: Likewise.
(python-pyside-2-tools)[inputs]: Change from QTBASE to QTBASE/NEXT.
 2020-07-15 20:08:10 +02:00
Tobias Geerinckx-Rice
b514478cb9
gnu: gparted: Use the Glib-or-GTK build system. 
Fixes <https://issues.guix.gnu.org/38544>.

* gnu/packages/disk.scm (gparted)[build-system]: Use
glib-or-gtk-build-system.
 2020-07-15 19:41:40 +02:00
Tobias Geerinckx-Rice
7af2b55d7b
gnu: protobuf: Update to 3.12.3. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.12.3.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
ba1e4ce256
gnu: rust: Add SSL native search paths. 
* gnu/packages/rust.scm (rust-1.19)[native-search-paths]: Add entries
for SSL_CERT_DIR and SSL_CERT_FILE.

Reported by Kimapr[m] in #guix.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
7e3b537c76
gnu: Consistently use license: prefix in (gnu packages mail). 
* gnu/packages/mail.scm: Don't #:select arbitrary variables from
(guix licenses).
(anubis, mailutils, nullmailer, fetchmail, mutt, neomutt, gmime)
(bogofilter, offlineimap, emacs-mew, mu, alot, notifymuch, notmuch)
(python-notmuch, muchsync, getmail, libetpan, compface, claws-mail)
(msmtp, exim, dovecot, dovecot-trees, dovecot-libsodium-plugin, isync)
(perl-email-abstract, perl-email-address, perl-email-address-xs)
(perl-email-date-format, perl-email-messageid, perl-email-mime)
(perl-email-mime-contenttype, perl-email-mime-encodings)
(perl-email-sender, perl-email-simple, libesmtp, esmtp, fdm, procmail)
(khard, perl-mail-spf, perl-mail-authenticationresults, perl-mail-dkim)
(dkimproxy, mb2md, mpop, mhonarc, sendmail, opensmtpd, opensmtpd-extras)
(python-mailmanclient, python2-django-mailman3, postorius, swaks, alpine)
(balsa, afew, pan, urlscan, tnef, mumi, ytnef, public-inbox, sylpheed)
[licenses]: Use a license: prefix instead.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
4fdf4b6cfa
gnu: opensmtpd-extras: Update to 6.7.1. 
* gnu/packages/mail.scm (opensmtpd-extras): Update to 6.7.1.
[native-inputs]: Remove bison, groff, automake, and autoconf.
[inputs]: Remove libasr, perl, lua, and linux-pam.  Add mysql.
[arguments]: Remove obsolete or ineffective options.
[license]: Update.
 2020-07-15 19:41:39 +02:00
Tobias Geerinckx-Rice
6422615fc9
gnu: opensmtpd-extras: Don't use NAME in source URI. 
* gnu/packages/mail.scm (opensmtpd-extras)[source]: Hard-code NAME.
 2020-07-15 19:41:39 +02:00
Ludovic Courtès
d7e9e0bbc9
system: 'operating-system-root-file-system' raises upon missing root. 
* gnu/system.scm (operating-system-root-file-system): Raise when 'find'
returns #f.
 2020-07-15 01:36:24 +02:00
Ludovic Courtès
9e12da319b
system: Add 'location' field to <operating-system>. 
This allows error messages to include source location info.

* gnu/system.scm (<operating-system>)[location]: New field.
 2020-07-15 01:36:24 +02:00
Ludovic Courtès
a168c3e4f8
ui: 'with-error-handling' does not unwind the stack. 
Since a07d5e558b, we've been getting
useless backtraces upon unhandled errors, like this:

  Backtrace:
	     1 (primitive-load "/home/…/bin/guix")
  In guix/ui.scm:
    1953:12  0 (run-guix-command _ . _)

  guix/ui.scm:1953:12: In procedure run-guix-command:
  In procedure struct-vtable: Wrong type argument in position 1 (expecting struct): #f

This change finally gives us real backtraces back.

* guix/ui.scm (guard*): New macro.
(call-with-error-handling): Use it instead of 'guard'.
 2020-07-15 01:36:24 +02:00
Ludovic Courtès
8003a5adaf
news: Add ‘fr’ translation. 
* etc/news.scm: Add ‘fr’ translation.
 2020-07-15 01:36:24 +02:00
Ludovic Courtès
b91a73a6a4
services: Add 'system-provenance' procedure. 
* gnu/services.scm (sexp->channel, system-provenance): New procedures.
* guix/scripts/system.scm (sexp->channel): Remove.
(display-system-generation): Use 'system-provenance' instead of parsing
the "provenance" file right here.
 2020-07-15 01:36:24 +02:00
Marius Bakke
0a72157271
gnu: Remove python2-pywavelets. 
This package no longer supports Python 2 since the update in
501d89d707 and has no dependents.

* gnu/packages/python-xyz.scm (python2-pywavelets): Remove variable.
 2020-07-14 22:01:35 +02:00
Marius Bakke
f5e3f02fdd
gnu: python-pynacl: Update to 1.4.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.4.0.
[source](snippet): Adjust to fix spurious build requirement.
[arguments]: Add #:modules.  Replace check phase with custom pytest invocation.
 2020-07-14 21:41:39 +02:00
Marius Bakke
2008b8b7af
gnu: python-simplejson: Update to 3.17.0. 
* gnu/packages/python-xyz.scm (python-simplejson): Update to 3.17.0.
 2020-07-14 21:41:39 +02:00
Marius Bakke
784dadc0f7
gnu: python-paramiko: Update to 2.7.1. 
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.1.
 2020-07-14 21:41:38 +02:00
Marius Bakke
ec6ee7d72e
gnu: python-bitarray: Update to 1.4.0. 
* gnu/packages/python-xyz.scm (python-bitarray): Update to 1.4.0.
 2020-07-14 21:41:38 +02:00
Marius Bakke
3b4bb631c3
gnu: python-pycurl: Update to 7.43.0.5. 
* gnu/packages/python-web.scm (python-pycurl): Update to 7.43.0.5.
 2020-07-14 21:41:38 +02:00
Marius Bakke
007af2fb15
gnu: python-bottle: Update to 0.12.18. 
* gnu/packages/python-web.scm (python-bottle): Update to 0.12.18.
 2020-07-14 21:41:38 +02:00
Marius Bakke
d89266edf7
gnu: virt-manager: Remove unused input. 
* gnu/packages/virtualization.scm (virt-manager)[inputs]: Remove PYTHON-IPADDRESS.
 2020-07-14 21:41:38 +02:00
Marius Bakke
3ad866c8e4
gnu: python-txtorcon: Remove unused input. 
* gnu/packages/python-crypto.scm (python-txtorcon)[propagated-inputs]: Remove
PYTHON-IPADDRESS.
 2020-07-14 21:41:38 +02:00
Marius Bakke
34fa5c0532
gnu: silkaj: Remove unused input. 
* gnu/packages/finance.scm (silkaj)[inputs]: Remove PYTHON-IPADDRESS.
 2020-07-14 21:41:38 +02:00
Marius Bakke
01655843e2
gnu: python-docker-py: Remove unused input. 
* gnu/packages/docker.scm (python-docker-py)[inputs]: Remove PYTHON-IPADDRESS.
 2020-07-14 21:41:37 +02:00