Commit graph

92469 commits

Author SHA1 Message Date
Ricardo Wurmus 9ce1fd24e3
gnu: bwa-meth: Remove trailing #T from build phase.
* gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Remove trailing #T
from build phase.
2022-01-31 16:07:39 +01:00
Ricardo Wurmus f32a49fceb
gnu: bwa-meth: Update to 0.2.3.
* gnu/packages/bioinformatics.scm (bwa-meth): Update to 0.2.3.
2022-01-31 16:07:39 +01:00
Julien Lepiller 9295b91116
gnu: fontmanager: Add missing input.
* gnu/packages/fontutils.scm (fontmanager)[native-inputs]: Add
python-wrapper.
2022-01-31 15:53:48 +01:00
Julien Lepiller c636a8786e
gnu: java-log4j-api: Update to 2.17.1.
* gnu/packages/java.scm (java-log4j-api): Update to 2.17.1.
2022-01-31 15:29:14 +01:00
Vinicius Monego 1b778f03e0
gnu: pre-commit: Update to 2.17.0.
* gnu/packages/version-control.scm (pre-commit): Update to 2.17.0.
2022-01-31 10:56:33 -03:00
Vinicius Monego 4014672172
gnu: shotcut: Update to 22.01.30.
* gnu/packages/video.scm (shotcut): Update to 22.01.30.
2022-01-31 10:55:48 -03:00
Efraim Flashner e217174b7b
gnu: texlive-bin: Fix building on riscv64-linux.
* gnu/packages/tex.scm (texlive-bin)[arguments]: Adjust configure-flags
for riscv64-linux to skip luajit based binaries. Add phase to skip some
tests.
2022-01-31 09:22:49 +02:00
Marius Bakke 43dd34c777
gnu: Remove OpenSSL 1.0.
This package no longer has any users in Guix.

* gnu/packages/tls.scm (openssl-1.0): Remove variable.
2022-01-30 17:04:34 +01:00
Marius Bakke 9b8839099e
gnu: Remove unused patch.
* gnu/packages/patches/openssl-CVE-2019-1559.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-30 17:04:34 +01:00
Marius Bakke 2932c421a3
gnu: OpenSSL: Add 3.0.
* gnu/packages/tls.scm (openssl-3.0): New variable.
* gnu/packages/patches/openssl-3.0-c-rehash-in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-30 17:04:34 +01:00
Marius Bakke 753cacb1ad
gnu: util-linux-with-udev: Remove input labels.
* gnu/packages/linux.scm (util-linux+udev)[inputs]: Use MODIFY-INPUTS.
2022-01-30 17:04:34 +01:00
Marius Bakke 5c9c7856a6
gnu: expat: Update replacement to 2.4.4 [fixes CVE-2022-23852, CVE-2022-23990].
* gnu/packages/xml.scm (expat/fixed): Update to 2.4.4.
2022-01-30 17:04:34 +01:00
Marius Bakke bb5f6d8cef
gnu: waylandpp: Update to 0.2.9.
* gnu/packages/freedesktop.scm (waylandpp): Update to 0.2.9.
2022-01-30 17:04:34 +01:00
Sharlatan Hellseher 3e497b3a4c
gnu: Add python-gwcs.
* gnu/packages/astronomy.scm (python-gwcs): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:19 -03:00
Sharlatan Hellseher 007495210d
gnu: Add python-asdf-wcs-schemas.
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:19 -03:00
Sharlatan Hellseher 7b2747c81d
gnu: Add python-asdf-astropy.
* gnu/packages/astronomy.scm (python-asdf-astropy): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:18 -03:00
Sharlatan Hellseher 527ee1bdc8
gnu: Add python-asdf-coordinates-schemas.
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:18 -03:00
Sharlatan Hellseher 89a5c53f38
gnu: Add python-asdf-transform-schemas.
* gnu/packages/astronomy.scm (python-asdf-transform-schemas): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:17 -03:00
Sharlatan Hellseher e1437e7ec1
gnu: python-asdf: Update to 2.8.3.
* gnu/packages/astronomy.scm: (python-asdf): Update to 2.8.3.
[inputs]: Use the new style. Move python-importlib-resources,
python-jsonschema, python-numpy, python-pyyaml to ...
[propagated-inputs]: ... here. Use the new style. Add python-jmespath.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:17 -03:00
Marius Bakke ab8b76b735
services: zabbix: Support gexps in configuration serializer.
This makes it possible to do e.g. (include-files (list (local-file "foo.conf"))).

* gnu/services/monitoring.scm (serialize-field, serialize-list,
serialize-include-files, serialize-extra-options): Rewrite as gexps.
(zabbix-server-config-file, zabbix-agent-config-file): Simplify builders by
using FORMAT.
2022-01-30 14:47:43 +01:00
Efraim Flashner dea8810036
gnu: patchelf: Add release-monitoring-url.
* gnu/packages/elf.scm (patchelf)[properties]: New field.
2022-01-30 14:58:28 +02:00
Efraim Flashner 0b1be21d1f
gnu: mesa: Add support for riscv64-linux.
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm-11 on riscv64-linux.
[native-inputs]: Add glslang on riscv64-linux.
[arguments]: In configure-flags adjust gallium-drivers to swap the
power* and intel drivers for the fallback option. Specify riscv64-linux
configure options for vulkan-drivers. Enable the vulkan-overlay-layer
and llvm support. Adjust the custom 'disable-failing-test phase to have
a riscv64-linux section.
2022-01-30 12:28:08 +02:00
Liliana Marie Prikler 6589966b97
gnu: audacity: Add fallback to locate ffmpeg via pkg-config.
* gnu/packages/patches/audacity-ffmpeg-fallback.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/audio.scm (audacity)[patches]: Use it here.
[inputs]: Add back ffmpeg.
2022-01-30 08:11:00 +01:00
Leo Famulari 090e925816
gnu: k3b: Do not depend on QtWebKit.
According to CMakelists.txt, "Qt5WebKitWidgets is used for prettier
k3bdiskinfoview."

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Remove qtwebkit.
2022-01-29 19:18:46 -05:00
Leo Famulari 4bd060909d
gnu: luminance-hdr: Replace dependency on QtWebKit with QtWebEngine.
See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/image-viewers.scm (luminance-hdr)[inputs]: Remove qtwebkit. Add
qtwebengine, qtdeclarative, and qtwebchannel.
2022-01-29 18:43:13 -05:00
Leo Famulari f3d0ed37ea
gnu: python-black: Document the tomli version requirements.
* gnu/packages/python-xyz.scm (python-black): Add comment.
2022-01-29 18:29:32 -05:00
Leo Famulari f928b56d13
gnu: choqok: Don't depend on QtWebKit.
These dependencies were only used to create a plugin for Konqueror, which Guix
does not include.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/kde-internet.scm (choqok)[inputs]: Remove kdewebkit and qtwebkit.
2022-01-29 18:16:48 -05:00
Leo Famulari db17f8b502
gnu: fcitx5-chinese-addons: Replace the dependency on QtWebKit with QtWebEngine.
See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/fcitx5.scm (fcitx5-chinese-addons)[inputs]: Remove qtwebkit. Add
qtdeclarative, qtwebchannel, and qtwebengine.
[arguments]: Pass "-DUSE_WEBKIT=off" to #:configure-flags.
2022-01-29 17:59:30 -05:00
Leo Famulari f8bfb2d856
gnu: texmaker: Don't depend on QtWebKit.
The program stopped using QtWebKit in version 5.0.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/tex.scm (texmaker)[inputs]: Remove qtwebkit.
2022-01-29 17:31:17 -05:00
Liliana Marie Prikler 07f45615c3
gnu: wpewebkit: Update to 2.34.3 [security fixes].
This update fixes all the security issues fixed upstream between
versions 2.30.5 and 2.34.3:

https://webkitgtk.org/news.html

* gnu/packages/webkit.scm (wpewebkit): Update to 2.34.3.
[#:phases]: Add ‘patch-cmake’ phase to fix an error in the install directories
of the documentation.
[inputs]: Add lcms.
2022-01-29 16:39:56 -05:00
Liliana Marie Prikler f0bc429a52
gnu: wpebackend-fdo: Update to 1.12.0.
* gnu/packages/webkit.scm (wpebackend-fdo): Update to 1.12.0.
[build-system]: Use meson-build-system.
[inputs]: Add libepoxy.
2022-01-29 16:39:55 -05:00
Liliana Marie Prikler c97e07be56
gnu: libwpe: Update to 1.12.0.
* gnu/packages/webkit.scm (libwpe): Update to 1.12.0.
[build-system]: Use meson-build-system.
2022-01-29 16:39:51 -05:00
Leo Famulari 08875dd556
gnu: WPE WebKit: Set the Common Platform Enumeration (CPE) name.
* gnu/packages/webkit.scm (wpewebkit)[properties]: New field.
2022-01-29 15:37:17 -05:00
Leo Famulari 0442d683c3
gnu: kdenlive: Don't depend on QtWebKit.
Kdenlive no longer uses QtWebKit.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/kde.scm (kdenlive)[inputs]: Remove qtwebkit.
2022-01-29 15:29:12 -05:00
Leo Famulari 9d13747fc2
gnu: nextcloud-client: Don't depend on QtWebKit.
This package propagates QtWebEngine and doesn't keep a reference to QtWebKit.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/sync.scm (qtwebkit)[inputs]: Remove qtwebkit.
[arguments]: Remove related #:configure-flag that is not recognized by
our version of nextcloud-client.
2022-01-29 13:38:56 -05:00
Marius Bakke b6b0cfa2f8
tests: Add system test for TimescaleDB.
* gnu/tests/databases.scm (%timescaledb-os, run-timescaledb-test,
%test-timescaledb): New variables.
2022-01-29 16:09:03 +01:00
Marius Bakke 59847afda7
services: postgresql: Export missing <postgresql-configuration> accessor.
* gnu/services/databases.scm: Export POSTGRESQL-CONFIGURATION-EXTENSION-PACKAGES.
2022-01-29 16:09:03 +01:00
Marius Bakke 765be3dcef
tests: postgresql: Test the default PostgreSQL.
* gnu/tests/databases.scm (%postgresql-os): Change from POSTGRESQL-10 to
POSTGRESQL.
2022-01-29 16:09:03 +01:00
Marius Bakke 45681b89a8
gnu: zabbix: Update to 5.4.9.
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.4.9.
2022-01-29 12:52:38 +01:00
Marius Bakke 756f16aa01
services: zabbix-agent: Set the PATH variable.
* gnu/services/monitoring.scm (zabbix-agent-shepherd-service)[start]: Set the
PATH variable to the common values.
2022-01-29 12:52:38 +01:00
Marius Bakke 81873cbc5d
gnu: Add TimescaleDB.
* gnu/packages/databases.scm (timescaledb): New variable.
2022-01-29 12:52:38 +01:00
Marius Bakke 8fa6f975d4
services: zabbix-frontend: Adjust indentation.
* gnu/services/monitoring.scm (zabbix-front-end-activation): Reindent.
2022-01-29 12:52:37 +01:00
Marius Bakke 7f12a40e9a
services: zabbix-frontend: Enable IEEE754-compatible history values.
* gnu/services/monitoring.scm (zabbix-front-end-config): Specify
$DB['DOUBLE_IEEE754'] in the configuration file, as per current example.
2022-01-29 12:52:37 +01:00
Marius Bakke 5122805c48
services: zabbix-server: Add shepherd actions for runtime control commands.
* gnu/services/monitoring.scm (zabbix-server-runtime-control-procedure,
zabbix-server-actions): New variables.
(zabbix-server-shepherd-service)[actions]: New field.  Let-bind variables
common between actions and the start procedure.
2022-01-29 12:52:37 +01:00
Marius Bakke 0d347fe83e
gnu: zabbix-server: Use a sensible default for the "fping" executable.
* gnu/packages/monitoring.scm (zabbix-agentd)[source](modules, snippet): New
fields.
2022-01-29 12:52:37 +01:00
Marius Bakke 7971f88e83
gnu: fping: Enable IPv6 support.
* gnu/packages/networking.scm (fping)[arguments]: New field.
2022-01-29 12:52:37 +01:00
Marius Bakke 4657a39270
services: zabbix-frontend: Fix configuration file for hard coded passwords.
This is a follow-up to commit 078f5bfae7.

* gnu/services/monitoring.scm (zabbix-front-end-config): When DB-PASSWORD is
set, enclose the password with quotes in the configuration file.
2022-01-29 12:52:37 +01:00
Marius Bakke 171084792f
gnu: python-pydantic: Update to 1.9.0.
* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.9.0.
2022-01-29 12:52:37 +01:00
Liliana Marie Prikler 69218e84f1
.dir-locals.el: Don't mess up indentation of prepend and append.
The current version appears to assume special values in the first and second
package, but it's either all lists (default append) or all package input
expressions (inside modify-inputs), which themselves are either packages
or lists consisting of a package and a string.

* .dir-locals.el: Drop (eval . (put 'prepend 'scheme-indent-function 2))
and (eval . (put 'append 'scheme-indent-function 2)).
2022-01-29 08:47:38 +01:00
Andrew Tropin f38697f5f8
build-system: emacs: Ensure that package descriptions are generated.
This patch addresses the second part of <https://bugs.gnu.org/48331>.
While existing -pkg.el files were previously installed, no such files
were generated for packages lacking them, resulting in packages not
being listed as installed and not being available towards
“describe-package”.

* guix/build/emacs-build-system.scm (find-root-library-file)
(ensure-package-description): New variables.
(%standard-phases): Add ‘ensure-package-description’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-01-29 08:45:06 +01:00