Eric Bavier
9a899cceab
gnu: petsc: Upgrade to 3.6.0.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 15:34:36 -05:00
Eric Bavier
cec86422b7
gnu: Add MUMPS.
...
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
Eric Bavier
aa75ad0097
gnu: Add METIS.
...
* gnu/packages/maths.scm (metis): New variable.
2015-06-29 15:34:36 -05:00
Eric Bavier
700ff22219
gnu: Add p4est.
...
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
2015-06-29 15:34:36 -05:00
Eric Bavier
e1ff597a64
gnu: Add ScaLAPACK.
...
* gnu/packages/maths.scm (scalapack): New variable.
2015-06-29 15:34:36 -05:00
Eric Bavier
cf0ec6c46e
gnu: scotch, pt-scotch: Build esmumps libraries.
...
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
2015-06-29 15:34:36 -05:00
Eric Bavier
d6602ee9d4
gnu: scotch, pt-scotch: Use modify-phases.
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* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
2015-06-29 15:34:36 -05:00
Eric Bavier
6c7985408f
gnu: Update scotch to 6.0.4.
...
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
[arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
Eric Bavier
38f0a2bade
gnu: openmpi: Upgrade to 1.8.5.
...
* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
[native-inputs]: Add perl.
[arguments]: Add configure flags for thread support.
2015-06-29 15:34:36 -05:00
Eric Bavier
579f5c8a58
gnu: hwloc: Move numactl to inputs.
...
* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
[inputs]: ...to here.
[arguments]: New 'refine-libnuma' phase.
2015-06-29 15:34:36 -05:00
Eric Bavier
ce7d9c989d
gnu: hwloc: Upgrade to 1.10.1.
...
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
[source]: Use patch.
[propagated-inputs]: Remove libpci.
[inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
2015-06-29 15:34:36 -05:00
Eric Bavier
7362371da5
gnu: python-mccabe: Fix license field.
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* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
'license:expat'.
2015-06-29 15:34:35 -05:00
Cyril Roelandt
e8df8f476e
gnu: Add python-flake8.
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* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
2015-06-30 00:07:56 +02:00
Cyril Roelandt
a59e017cb1
gnu: Add python-mccabe.
...
* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
2015-06-30 00:07:56 +02:00
Cyril Roelandt
e31d7f4420
gnu: Add python-pyflakes.
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* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
2015-06-30 00:07:55 +02:00
Cyril Roelandt
d889e6c4d9
gnu: Add python-pep8.
...
* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
2015-06-30 00:07:55 +02:00
Ricardo Wurmus
2573410865
gnu: withershins: Use new "libiberty" package.
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* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
[arguments]: Simplify "find-libiberty" phase.
2015-06-29 21:01:13 +02:00
Ricardo Wurmus
2b6b6d13e7
gnu: Add libiberty.
...
* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
2015-06-29 21:01:13 +02:00
Ricardo Wurmus
74e03fccd3
gnu: r: Update to 3.2.1.
...
* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 16:13:28 +02:00
Ricardo Wurmus
82c370dea1
gnu: Add Blast+.
...
* gnu/packages/bioinformatics.scm (blast+): New variable.
2015-06-29 16:13:28 +02:00
Ludovic Courtès
11906b2c38
gnu: global: Update to 6.5.
...
* gnu/packages/code.scm (global): Update to 6.5.
2015-06-29 14:42:10 +02:00
Ludovic Courtès
622a616e33
gnu: help2man: Update to 1.47.1.
...
* gnu/packages/man.scm (help2man): Update to 1.47.1.
2015-06-29 14:42:10 +02:00
Ludovic Courtès
b1f5fe0eb7
gnu: parallel: Update to 20150622.
...
* gnu/packages/parallel.scm (parallel): Update to 20150622.
2015-06-29 14:42:10 +02:00
Ludovic Courtès
dd138fc856
gnu: screen: Update to 4.3.1.
...
* gnu/packages/screen.scm (screen): Update to 4.3.1.
2015-06-29 14:42:10 +02:00
Ludovic Courtès
ce1e4bd58d
gnu: texinfo: Add version 6.0.
...
* gnu/packages/texinfo.scm (texinfo-6): New variable.
2015-06-29 14:42:10 +02:00
Ludovic Courtès
ab5f49cf6a
gnu: gcc-4.8: Update to 4.8.5.
...
* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
2015-06-29 14:42:10 +02:00
Ricardo Wurmus
cc6ed47737
gnu: Add plink.
...
* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
2015-06-29 12:54:48 +02:00
Eric Bavier
5c852e085d
gnu: synergy: Upgrade to 1.7.3.
...
* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
[source]: Use github for source download. Add snippet to remove
bundled source and binaries.
[inputs]: Add openssl.
[arguments]: Copy example configuration files to out during 'install
phase.
2015-06-28 12:03:30 -05:00
Ricardo Wurmus
b5ad1659ba
gnu: Add sfarkxtc.
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* gnu/packages/compression.scm (sfarkxtc): New variable.
2015-06-28 19:39:48 +02:00
Ricardo Wurmus
646898b358
gnu: Add sfarklib.
...
* gnu/packages/compression.scm (sfarklib): New variable.
2015-06-28 19:39:48 +02:00
Ricardo Wurmus
fcbeb00b70
gnu: Add Guitarix.
...
* gnu/packages/audio.scm (guitarix): New variable.
2015-06-28 18:59:57 +02:00
Ricardo Wurmus
fb029d463d
gnu: ardour: Update to 4.1.
...
* gnu/packages/audio.scm (ardour): Update to 4.1.
2015-06-28 14:34:08 +02:00
Ricardo Wurmus
58593975b0
gnu: Add libtar.
...
* gnu/packages/compression.scm (libtar): New variable.
2015-06-28 12:38:46 +02:00
Claes Wallin
60def646bb
gnu: Add pv.
...
* gnu/package/pv.scm (pv): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Alex Kost <alezost@gmail.com>
2015-06-27 17:27:49 +03:00
Ludovic Courtès
c92f1c0a33
gnu: Refer to 'gcc' instead of 'gcc-4.9'.
...
* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
(cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
%gcc-static, %gcc-stripped): Likewise.
2015-06-26 17:06:30 +02:00
Ludovic Courtès
744985761a
gnu: youtube-dl: Update to 2015.06.25.
...
* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
2015-06-26 16:56:43 +02:00
Ricardo Wurmus
3a1bfe186d
gnu: Add python2-fastlmm.
...
* gnu/packages/python.scm (python2-fastlmm): New variable.
2015-06-26 15:29:01 +02:00
Ricardo Wurmus
0dde623211
gnu: Add python2-pysnptools.
...
* gnu/packages/python.scm (python2-pysnptools): New variable.
2015-06-26 15:29:01 +02:00
Mark H Weaver
1c080cb68a
gnu: nettle: Disable ifunc method of library initialization.
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* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
phase.
2015-06-25 16:47:59 -04:00
Ricardo Wurmus
19afbea136
gnu: Replace versioned gfortran inputs with just "gfortran".
...
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
2015-06-25 18:28:54 +02:00
Ricardo Wurmus
eed67cbb8f
gnu: Add default GCC and default gfortran.
...
* gnu/packages/gcc.scm (gcc): New variable.
* gnu/packages/gcc.scm (gfortran): New variable.
2015-06-25 18:28:54 +02:00
宋文武
96693d1d92
gnu: gstreamer: Add search path specification for 'GST_PLUGIN_SYSTEM_PATH'.
...
This reverts commit e53fc0c8a
, which add it wrongly to gst-plugins-base.
* gnu/packages/gstreamer.scm (gstreamer)[native-search-paths]: New field.
(gst-plugins-base)[native-search-paths]: Remove.
2015-06-25 10:09:08 +08:00
Ludovic Courtès
eae5b3fff5
linux-initrd: Produce cpio archives with zeroed timestamps, etc.
...
* guix/cpio.scm (file->cpio-header*): New procedure.
* gnu/build/linux-initrd.scm (write-cpio-archive): Add #:file->header argument
to 'cpio:write-cpio-archive'.
2015-06-24 18:05:03 +02:00
Ludovic Courtès
583323ca1d
linux-initrd: Populate cpio archives in a deterministic order.
...
* gnu/build/linux-initrd.scm (write-cpio-archive)[files]: Use 'sort' instead
of 'reverse'.
2015-06-24 18:05:03 +02:00
Ludovic Courtès
e8277f90c8
linux-initrd: Use (guix cpio) instead of GNU cpio.
...
* gnu/build/linux-initrd.scm (write-cpio-archive): Remove 'open-pipe*' and
related calls. Compute list of files in 'files' variable. Use
'cpio:write-cpio-archive'. Remove #:cpio parameter.
(build-initrd): Remove #:cpio parameter.
* gnu/system/linux-initrd.scm (expression->initrd): Likewise, and adjust
BUILDER accordingly. Add (guix cpio) to #:modules.
2015-06-24 18:05:03 +02:00
Ludovic Courtès
31fbf4b637
gnu: pius: Depend on GnuPG 2.0 rather than 2.1.
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* gnu/packages/gnupg.scm (pius)[inputs]: Change GNUPG to GNUPG-2.0.
2015-06-24 18:05:03 +02:00
Ricardo Wurmus
6d149ec349
gnu: julia: Use modify-phases syntax and add return values.
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* gnu/packages/julia.scm (julia)[arguments]: Use modify-phases syntax for
build phases and add missing return values.
2015-06-24 15:34:55 +02:00
Ricardo Wurmus
83a0db178f
gnu: r: Use gfortran-4.9.
...
* gnu/packages/statistics.scm (r)[inputs]: Replace gfortran-4.8 with
gfortran-4.9.
2015-06-24 12:03:00 +02:00
Ricardo Wurmus
c69a8b7b1b
gnu: Add gfortran 4.9.
...
* gnu/packages/gcc.scm (gfortran-4.9): New variable.
2015-06-24 12:03:00 +02:00
Ben Woodcroft
c684629f7c
gnu: Add hmmer.
...
* gnu/packages/bioinformatics.scm (hmmer): New variable.
2015-06-24 00:39:22 -04:00