gnu: Add hmmer.

* gnu/packages/bioinformatics.scm (hmmer): New variable.
This commit is contained in:
Ben Woodcroft 2015-06-24 11:51:05 +10:00 committed by Mark H Weaver
parent 5a72e4665a
commit c684629f7c

View file

@ -1032,6 +1032,35 @@ (define-public hisat
particular, reads spanning multiple exons.")
(license license:gpl3+)))
(define-public hmmer
(package
(name "hmmer")
(version "3.1b2")
(source (origin
(method url-fetch)
(uri (string-append
"http://selab.janelia.org/software/hmmer"
(version-prefix version 1) "/"
version "/hmmer-" version ".tar.gz"))
(sha256
(base32
"0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))))
(build-system gnu-build-system)
(native-inputs `(("perl", perl)))
(home-page "http://hmmer.janelia.org")
(synopsis "Biosequence analysis using profile hidden Markov models")
(description
"HMMER is used for searching sequence databases for homologs of protein
sequences, and for making protein sequence alignments. It implements methods
using probabilistic models called profile hidden Markov models (profile
HMMs).")
(license (list license:gpl3+
;; The bundled library 'easel' is distributed
;; under The Janelia Farm Software License.
(license:non-copyleft
"file://easel/LICENSE"
"See easel/LICENSE in the distribution.")))))
(define-public htseq
(package
(name "htseq")