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125435 commits

Author SHA1 Message Date
Ludovic Courtès 97927608cb
Revert "system: accounts: Export <user-account>."
This reverts commit 03795e2ba2.
Fixes <https://issues.guix.gnu.org/66279>.
2023-10-05 23:14:54 +02:00
B. Wilson 87b3ac13fe
gnu: Add apple-bash.
* gnu/packages/apple.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODELS): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:54 +02:00
Ludovic Courtès 762fdbdef5
perform-download: Set PATH before invoking ‘git’.
Fixes <https://issues.guix.gnu.org/66305>.
Reported by Guillaume Le Vaillant <glv@posteo.net>.

* guix/scripts/perform-download.scm (perform-git-download): Add call to
‘setenv’.
2023-10-05 23:14:53 +02:00
Distopico efab2a25be
gnu: rust-trybuild: Update 1.0.19 version hash.
Fixes <https://issues.guix.gnu.org/66345>.

* gnu/packages/crates-io.scm (rust-trybuild): Update 1.0.19 hash.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05 23:14:53 +02:00
Mekeor Melire 5694352c05
doc: Update bug-reference configuration snippet.
* doc/contributing.texi (The Perfect Setup)
<Viewing Bugs within Emacs>: Make bug-reference-bug-regexp match
more URLs based on issues.guix.gnu.org.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Suggested-by: Simon Tournier <zimon.toutoune@gmail.com>
2023-10-05 13:11:46 -04:00
Arun Isaac 0374640618
gnu: Add cgit-pink.
* gnu/packages/version-control.scm (cgit-pink): New variable.
2023-10-05 17:38:33 +01:00
Arun Isaac db52c06c3d
gnu: cgit: Fix cross compilation.
* gnu/packages/version-control.scm (cgit)[native-inputs]: Move bzip2, gzip and
xz to ...
[inputs]: ... here. Add bash-minimal.
[arguments]: Use cc-for-target.
2023-10-05 17:38:32 +01:00
Arun Isaac faad060771
gnu: cgit: Update package style.
* gnu/packages/version-control.scm (cgit)[arguments]: Rewrite using
G-expressions. Do not return #t from custom phases.
2023-10-05 17:38:28 +01:00
Mathieu Othacehe 29243a9f39
gnu: python-pynetbox: Update to 7.2.0.
* gnu/packages/python-web.scm (python-pynetbox): Update to 7.2.0.
2023-10-05 18:31:11 +02:00
Timotej Lazar 21f3f30141
gnu: Add python-pynetbox.
* gnu/packages/python-web.scm (python-pynetbox): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05 17:23:48 +02:00
Sharlatan Hellseher 9917079bd7
gnu: Add WCSTools.
* gnu/packages/astronomy.scm (wcstools): New variable.
* gnu/packages/patches/wcstools-extend-makefiles.patch: New file.
* gnu/local.mk: Add it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05 17:07:16 +02:00
Ricardo Wurmus d37e24827a
gnu: r-bayesfactor: Update to 0.9.12-4.5.
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.5.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus bba0dc6e5d
gnu: r-puniform: Update to 0.2.7.
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.7.
[propagated-inputs]: Add r-numderiv.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus a7b9a558d5
gnu: r-lubridate: Update to 1.9.3.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.3.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 6015f41454
gnu: r-vgam: Update to 1.1-9.
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus f3a73e9ce5
gnu: r-rmarkdown: Update to 2.25.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.25.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 6535a7d047
gnu: r-withr: Update to 2.5.1.
* gnu/packages/statistics.scm (r-withr): Update to 2.5.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 3b9bb9c61e
gnu: r-openssl: Update to 2.1.1.
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 48dcf15dea
gnu: r-dbplyr: Update to 2.3.4.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.3.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus d9993b98c6
gnu: r-markdown: Update to 1.9.
* gnu/packages/statistics.scm (r-markdown): Update to 1.9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 8f145cafec
gnu: r-evaluate: Update to 0.22.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.22.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus a82e566cbc
gnu: r-plyr: Update to 1.8.9.
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 07bf9f857f
gnu: r-matrix: Update to 1.6-1.1.
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-1.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 8b56e8fd32
gnu: r-lattice: Update to 0.21-9.
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-9.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 93f0029067
gnu: r-varhandle: Update to 2.0.6.
* gnu/packages/cran.scm (r-varhandle): Update to 2.0.6.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus bbf8ac3229
gnu: r-mockery: Update to 0.4.4.
* gnu/packages/cran.scm (r-mockery): Update to 0.4.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 9e2434a2ac
gnu: r-paws: Update to 0.4.0.
* gnu/packages/cran.scm (r-paws): Update to 0.4.0.
[propagated-inputs]: Add r-paws-common.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus dee60226bb
gnu: r-paws-common: Update to 0.6.1.
* gnu/packages/cran.scm (r-paws-common): Update to 0.6.1.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 5a62f0cb03
gnu: r-tensorflow: Update to 2.14.0.
* gnu/packages/cran.scm (r-tensorflow): Update to 2.14.0.
[propagated-inputs]: Add r-lifecycle.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 9737b40053
gnu: r-exactextractr: Update to 0.10.0.
* gnu/packages/cran.scm (r-exactextractr): Update to 0.10.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus bb034d5a57
gnu: r-protolite: Update to 2.3.0.
* gnu/packages/cran.scm (r-protolite): Update to 2.3.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus ce99c51f8f
gnu: r-vroom: Update to 1.6.4.
* gnu/packages/cran.scm (r-vroom): Update to 1.6.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 2c6fb7a21f
gnu: r-delaporte: Update to 8.3.0.
* gnu/packages/cran.scm (r-delaporte): Update to 8.3.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 12774311dd
gnu: r-pdftools: Update to 3.4.0.
* gnu/packages/cran.scm (r-pdftools): Update to 3.4.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 06fb5cf520
gnu: r-vdiffr: Update to 1.0.7.
* gnu/packages/cran.scm (r-vdiffr): Update to 1.0.7.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 4d0861d307
gnu: r-mlr3misc: Update to 0.13.0.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.13.0.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 1d7dfe2f8d
gnu: r-seurat: Update to 4.4.0.
* gnu/packages/cran.scm (r-seurat): Update to 4.4.0.
[propagated-inputs]: Add r-purrr.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus f7b4b14d49
gnu: r-seuratobject: Update to 4.1.4.
* gnu/packages/cran.scm (r-seuratobject): Update to 4.1.4.
2023-10-05 15:16:29 +02:00
Ricardo Wurmus 9703a303f6
gnu: r-metafor: Update to 4.4-0.
* gnu/packages/cran.scm (r-metafor): Update to 4.4-0.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 509ad5c498
gnu: r-brms: Update to 2.20.4.
* gnu/packages/cran.scm (r-brms): Update to 2.20.4.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 2bcbcea451
gnu: r-projpred: Update to 2.7.0.
* gnu/packages/cran.scm (r-projpred): Update to 2.7.0.
[propagated-inputs]: Add r-gtools.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus d1f4bc7ae1
gnu: r-rstanarm: Update to 2.26.1.
* gnu/packages/cran.scm (r-rstanarm): Update to 2.26.1.
[propagated-inputs]: Add r-posterior.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus ee4d8fabbb
gnu: r-rsconnect: Update to 1.1.1.
* gnu/packages/cran.scm (r-rsconnect): Update to 1.1.1.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus b5fc66d0ec
gnu: r-erm: Update to 1.0-4.
* gnu/packages/cran.scm (r-erm): Update to 1.0-4.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 250f6b92f7
gnu: r-kutils: Update to 1.73.
* gnu/packages/cran.scm (r-kutils): Update to 1.73.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 5767e3f443
gnu: r-rsvg: Update to 2.5.0.
* gnu/packages/cran.scm (r-rsvg): Update to 2.5.0.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 4aef0d05e1
gnu: r-caretensemble: Update to 2.0.3.
* gnu/packages/cran.scm (r-caretensemble): Update to 2.0.3.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 09a189941a
gnu: r-seewave: Update to 2.2.2.
* gnu/packages/cran.scm (r-seewave): Update to 2.2.2.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus b37735ec76
gnu: r-gamlss: Update to 5.4-20.
* gnu/packages/cran.scm (r-gamlss): Update to 5.4-20.
2023-10-05 15:16:28 +02:00
Ricardo Wurmus 0f08f438c0
gnu: r-parameters: Update to 0.21.2.
* gnu/packages/cran.scm (r-parameters): Update to 0.21.2.
2023-10-05 15:16:28 +02:00