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Author SHA1 Message Date
Guillaume Le Vaillant 9542ca07d0
gnu: cl-djula: Update to 0.2.0-2.6f14259. 
* gnu/packages/lisp-xyz.scm (sbcl-djula): Update to 0.2.0-2.6f14259.
 2023-02-24 15:50:35 +01:00
Guillaume Le Vaillant 540eca0cf2
gnu: cl-collectors: Update to 1.0-1.748f0a1. 
* gnu/packages/lisp-xyz.scm (sbcl-collectors): Update to 1.0-1.748f0a1.
 2023-02-24 15:50:35 +01:00
Guillaume Le Vaillant f59aa0916c
gnu: cl-introspect-environment: Update to 0.1-2.8fb20a1. 
* gnu/packages/lisp-xyz.scm (sbcl-introspect-environment): Update to
  0.1-2.8fb20a1.
 2023-02-24 15:50:35 +01:00
Guillaume Le Vaillant 37764f213b
gnu: cl-trivial-utf-8: Update to 0.0.0-2.6ca9943. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-utf-8): Update to 0.0.0-2.6ca9943.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 3639a25f19
gnu: cl-fast-io: Update to 1.0.0-3.a4c5ad6. 
* gnu/packages/lisp-xyz.scm (sbcl-fast-io): Update to 1.0.0-3.a4c5ad6.
  [arguments]: Enable tests.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 5eea067bd2
gnu: cl-lisp-namespace: Update to 0.1-2.699fccb. 
* gnu/packages/lisp-xyz.scm (sbcl-lisp-namespace): Update to 0.1-2.699fccb.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 90c24caa42
gnu: cl-let-plus: Update to 0.0.0-2.455e657. 
* gnu/packages/lisp-xyz.scm (sbcl-let-plus): Update to 0.0.0-2.455e657.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 27ac29ff23
gnu: cl-trivial-indent: Update to 1.0.0-1.f252750. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-indent): Update to 1.0.0-1.f252750.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant f3a2e1dee8
gnu: cl-anaphora: Update to 0.9.8. 
* gnu/packages/lisp-xyz.scm (sbcl-anaphora): Update to 0.9.8.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 156e56df68
gnu: cl-local-time: Update to 1.0.6-3.40169fe. 
* gnu/packages/lisp-xyz.scm (sbcl-local-time): Update to 1.0.6-3.40169fe.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 133fda953a
gnu: cl-cl+ssl: Update to 0.0.0-5.1e2ffc9. 
* gnu/packages/lisp-xyz.scm (sbcl-cl+ssl): Update to 0.0.0-5.1e2ffc9.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 8397e6e0a9
gnu: cl-named-readtables: Update to 0.9-4.d5ff162. 
* gnu/packages/lisp-xyz.scm (sbcl-named-readtables): Update to 0.9-4.d5ff162.
  [arguments]: Disable tests.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 4f35f85623
gnu: cl-cffi: Remove input labels. 
* gnu/packages/lisp-xyz.scm (sbcl-cffi)[source]: Fix file name.
  [inputs, native-inputs]: Remove labels.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 8facb57205
gnu: cl-usocket: Update to 0.8.5. 
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.5.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant 70a81fa6f0
gnu: cl-closer-mop: Update to 1.0.0-3.7b86f2a. 
* gnu/packages/lisp-xyz.scm (sbcl-closer-mop): Update to 1.0.0-3.7b86f2a.
 2023-02-24 15:50:34 +01:00
Guillaume Le Vaillant fb6e7e4c05
gnu: cl-babel: Update to 0.5.0-3.627d6a6. 
* gnu/packages/lisp-xyz.scm (sbcl-babel): Update to 0.5.0-3.627d6a6.
 2023-02-24 15:50:34 +01:00
Andrew Tropin e615aaca28
scripts: home: Move ensure-profile-directory to a better place. 
The profile directory is usually created by daemon, when user opens a
connection.  Ideally, we would like to remove ensure-profile-directory call at
all, but daemon doesn't handle case with custom $GUIX_STATE_DIRECTORY yet.
More information in: <https://issues.guix.gnu.org/61717>

* guix/scripts/home.scm (process-action): Move ensure-profile-directory call
to the place, where connection to the daemon is already open.

Reported-by: wolf <wolf@wolfsden.cz>
 2023-02-24 16:50:23 +04:00
Nicolas Goaziou e36ac71551
gnu: Fix texlive-minted build. 
* gnu/packages/tex.scm (texlive-fancyvrb): New variable.
(texlive-minted): Fix hash.
 2023-02-24 12:09:54 +01:00
Nicolas Goaziou 1f221c9fc5
gnu: emacs-suneater-theme: Update to 2.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-suneater-theme): Update to 2.2.1.
 2023-02-24 11:55:14 +01:00
Nicolas Goaziou 699c630946
gnu: emacs-taxy-magit-section: Update to 0.12.2. 
* gnu/packages/emacs-xyz.scm (emacs-taxy-magit-section): Update to 0.12.2.
 2023-02-24 11:55:13 +01:00
Yovan Naumovski 5957ac3bb3
gnu: Add tofi. 
* gnu/packages/xdisorg.scm (tofi): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-02-24 11:55:13 +01:00
conses 4d5ac8dad0
gnu: Add emacs-display-wttr. 
* gnu/packages/emacs-xyz.scm (emacs-display-wttr): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-02-24 11:55:13 +01:00
Yovan Naumovski cb8b758956
gnu: freeciv: Update to 3.0.6. 
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-02-24 11:55:12 +01:00
Simon Tournier 8eaef6abaa
gnu: r-tximeta: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.1.
 2023-02-24 08:02:22 +01:00
Simon Tournier 8fcae955db
gnu: r-gviz: Update to 1.42.1. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.42.1.
 2023-02-24 08:02:22 +01:00
Simon Tournier 63760dab9c
gnu: r-scran: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.26.2.
 2023-02-24 08:02:22 +01:00
Simon Tournier a95f6f7931
gnu: r-scuttle: Update to 1.8.4. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.4.
 2023-02-24 08:02:22 +01:00
Simon Tournier b36f98b19f
gnu: r-preprocesscore: Update to 1.60.2. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.2.
 2023-02-24 08:02:22 +01:00
Simon Tournier 7d4a159c78
gnu: r-variancepartition: Update to 1.28.4. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.4.
 2023-02-24 08:02:22 +01:00
Simon Tournier c8f618c808
gnu: r-biocfilecache: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.6.1.
 2023-02-24 08:02:22 +01:00
Simon Tournier 070274e314
gnu: r-massspecwavelet: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.64.1.
 2023-02-24 08:02:22 +01:00
Simon Tournier d635da51ce
gnu: r-lpsymphony: Update to 1.26.3. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.3.
 2023-02-24 08:02:21 +01:00
Simon Tournier 14038b4df0
gnu: r-dnacopy: Update to 1.72.3. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.3.
 2023-02-24 08:02:21 +01:00
Simon Tournier 2b6c03a34e
gnu: r-interactionset: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.26.1.
 2023-02-24 08:02:21 +01:00
Simon Tournier 9202c56e84
gnu: r-oligo: Update to 1.62.2. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.2.
 2023-02-24 08:02:21 +01:00
Simon Tournier 144c07fd4a
gnu: r-variantannotation: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.44.1.
 2023-02-24 08:02:21 +01:00
Simon Tournier 962278a621
gnu: r-stringdb: Update to 2.10.1. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.10.1.
 2023-02-24 08:02:21 +01:00
Simon Tournier 9682fd19bf
gnu: r-limma: Update to 3.54.1. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.1.
 2023-02-24 08:02:21 +01:00
Simon Tournier 8fb4758b12
gnu: r-impute: Update to 1.72.3. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.3.
 2023-02-24 08:01:02 +01:00
Simon Tournier 705d024b14
gnu: r-genomicfeatures: Update to 1.50.4. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.4.
 2023-02-24 08:01:02 +01:00
Simon Tournier 5b0984393c
gnu: r-genomeinfodb: Update to 1.34.9. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.9.
 2023-02-24 08:01:02 +01:00
Simon Tournier 4fd6ea684a
gnu: r-genefilter: Update to 1.80.3. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.3.
 2023-02-24 08:01:02 +01:00
Simon Tournier b38475bef4
gnu: r-edger: Update to 3.40.2. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.2.
 2023-02-24 08:01:02 +01:00
Simon Tournier 3ffaed5044
gnu: r-deseq2: Update to 1.38.3. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.38.3.
 2023-02-24 08:01:02 +01:00
Simon Tournier d2598f57fb
gnu: r-bsgenome: Update to 1.66.3. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.3.
 2023-02-24 08:01:02 +01:00
Simon Tournier 3f2a917993
gnu: r-annotationforge: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.1.
 2023-02-24 08:01:02 +01:00
Simon Tournier dd2c4cafdf
gnu: r-cytolib: Update to 2.10.1. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.10.1.
[propagated-inputs]: Remove r-rcpp, r-rcpparmadillo and r-rcppparallel.
 2023-02-24 08:00:58 +01:00
Tobias Geerinckx-Rice 5d10644371
git: Make better use of the better progress bar. 
Commit 189525412e introduced
‘high-resolution’ Unicode progress bars, but these require more granular
calls to reach their full potential.

* guix/git.scm (show-progress): Derive the number of PROGRESS-BAR
updates from its maximum resolution, rather than hard-coding 100.
 2023-02-19 01:00:06 +01:00
Tobias Geerinckx-Rice 98e2a15b1e
git: Factor out INDEXER-PROGRESS-TOTAL-OBJECTS access. 
* guix/git.scm (show-progress): Reuse the result of the first call.
 2023-02-19 01:00:06 +01:00
Tobias Geerinckx-Rice 9aa750776a
ssh: Factor out progress % calculation. 
* guix/ssh.scm (notify-transfer-progress): Trust its % argument.
 2023-02-19 01:00:06 +01:00