Commit graph

92470 commits

Author SHA1 Message Date
Ricardo Wurmus
90b6b857fd
gnu: python-louvain: Update to 0.16.
* gnu/packages/graph.scm (python-louvain): Update to 0.16.
2022-01-31 16:07:39 +01:00
Ricardo Wurmus
9ce1fd24e3
gnu: bwa-meth: Remove trailing #T from build phase.
* gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Remove trailing #T
from build phase.
2022-01-31 16:07:39 +01:00
Ricardo Wurmus
f32a49fceb
gnu: bwa-meth: Update to 0.2.3.
* gnu/packages/bioinformatics.scm (bwa-meth): Update to 0.2.3.
2022-01-31 16:07:39 +01:00
Julien Lepiller
9295b91116
gnu: fontmanager: Add missing input.
* gnu/packages/fontutils.scm (fontmanager)[native-inputs]: Add
python-wrapper.
2022-01-31 15:53:48 +01:00
Julien Lepiller
c636a8786e
gnu: java-log4j-api: Update to 2.17.1.
* gnu/packages/java.scm (java-log4j-api): Update to 2.17.1.
2022-01-31 15:29:14 +01:00
Vinicius Monego
1b778f03e0
gnu: pre-commit: Update to 2.17.0.
* gnu/packages/version-control.scm (pre-commit): Update to 2.17.0.
2022-01-31 10:56:33 -03:00
Vinicius Monego
4014672172
gnu: shotcut: Update to 22.01.30.
* gnu/packages/video.scm (shotcut): Update to 22.01.30.
2022-01-31 10:55:48 -03:00
Efraim Flashner
e217174b7b
gnu: texlive-bin: Fix building on riscv64-linux.
* gnu/packages/tex.scm (texlive-bin)[arguments]: Adjust configure-flags
for riscv64-linux to skip luajit based binaries. Add phase to skip some
tests.
2022-01-31 09:22:49 +02:00
Marius Bakke
43dd34c777
gnu: Remove OpenSSL 1.0.
This package no longer has any users in Guix.

* gnu/packages/tls.scm (openssl-1.0): Remove variable.
2022-01-30 17:04:34 +01:00
Marius Bakke
9b8839099e
gnu: Remove unused patch.
* gnu/packages/patches/openssl-CVE-2019-1559.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-30 17:04:34 +01:00
Marius Bakke
2932c421a3
gnu: OpenSSL: Add 3.0.
* gnu/packages/tls.scm (openssl-3.0): New variable.
* gnu/packages/patches/openssl-3.0-c-rehash-in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-30 17:04:34 +01:00
Marius Bakke
753cacb1ad
gnu: util-linux-with-udev: Remove input labels.
* gnu/packages/linux.scm (util-linux+udev)[inputs]: Use MODIFY-INPUTS.
2022-01-30 17:04:34 +01:00
Marius Bakke
5c9c7856a6
gnu: expat: Update replacement to 2.4.4 [fixes CVE-2022-23852, CVE-2022-23990].
* gnu/packages/xml.scm (expat/fixed): Update to 2.4.4.
2022-01-30 17:04:34 +01:00
Marius Bakke
bb5f6d8cef
gnu: waylandpp: Update to 0.2.9.
* gnu/packages/freedesktop.scm (waylandpp): Update to 0.2.9.
2022-01-30 17:04:34 +01:00
Sharlatan Hellseher
3e497b3a4c
gnu: Add python-gwcs.
* gnu/packages/astronomy.scm (python-gwcs): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:19 -03:00
Sharlatan Hellseher
007495210d
gnu: Add python-asdf-wcs-schemas.
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:19 -03:00
Sharlatan Hellseher
7b2747c81d
gnu: Add python-asdf-astropy.
* gnu/packages/astronomy.scm (python-asdf-astropy): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:18 -03:00
Sharlatan Hellseher
527ee1bdc8
gnu: Add python-asdf-coordinates-schemas.
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:18 -03:00
Sharlatan Hellseher
89a5c53f38
gnu: Add python-asdf-transform-schemas.
* gnu/packages/astronomy.scm (python-asdf-transform-schemas): New variable.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:17 -03:00
Sharlatan Hellseher
e1437e7ec1
gnu: python-asdf: Update to 2.8.3.
* gnu/packages/astronomy.scm: (python-asdf): Update to 2.8.3.
[inputs]: Use the new style. Move python-importlib-resources,
python-jsonschema, python-numpy, python-pyyaml to ...
[propagated-inputs]: ... here. Use the new style. Add python-jmespath.

Signed-off-by: Vinicius Monego <monego@posteo.net>
2022-01-30 11:46:17 -03:00
Marius Bakke
ab8b76b735
services: zabbix: Support gexps in configuration serializer.
This makes it possible to do e.g. (include-files (list (local-file "foo.conf"))).

* gnu/services/monitoring.scm (serialize-field, serialize-list,
serialize-include-files, serialize-extra-options): Rewrite as gexps.
(zabbix-server-config-file, zabbix-agent-config-file): Simplify builders by
using FORMAT.
2022-01-30 14:47:43 +01:00
Efraim Flashner
dea8810036
gnu: patchelf: Add release-monitoring-url.
* gnu/packages/elf.scm (patchelf)[properties]: New field.
2022-01-30 14:58:28 +02:00
Efraim Flashner
0b1be21d1f
gnu: mesa: Add support for riscv64-linux.
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm-11 on riscv64-linux.
[native-inputs]: Add glslang on riscv64-linux.
[arguments]: In configure-flags adjust gallium-drivers to swap the
power* and intel drivers for the fallback option. Specify riscv64-linux
configure options for vulkan-drivers. Enable the vulkan-overlay-layer
and llvm support. Adjust the custom 'disable-failing-test phase to have
a riscv64-linux section.
2022-01-30 12:28:08 +02:00
Liliana Marie Prikler
6589966b97
gnu: audacity: Add fallback to locate ffmpeg via pkg-config.
* gnu/packages/patches/audacity-ffmpeg-fallback.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/audio.scm (audacity)[patches]: Use it here.
[inputs]: Add back ffmpeg.
2022-01-30 08:11:00 +01:00
Leo Famulari
090e925816
gnu: k3b: Do not depend on QtWebKit.
According to CMakelists.txt, "Qt5WebKitWidgets is used for prettier
k3bdiskinfoview."

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Remove qtwebkit.
2022-01-29 19:18:46 -05:00
Leo Famulari
4bd060909d
gnu: luminance-hdr: Replace dependency on QtWebKit with QtWebEngine.
See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/image-viewers.scm (luminance-hdr)[inputs]: Remove qtwebkit. Add
qtwebengine, qtdeclarative, and qtwebchannel.
2022-01-29 18:43:13 -05:00
Leo Famulari
f3d0ed37ea
gnu: python-black: Document the tomli version requirements.
* gnu/packages/python-xyz.scm (python-black): Add comment.
2022-01-29 18:29:32 -05:00
Leo Famulari
f928b56d13
gnu: choqok: Don't depend on QtWebKit.
These dependencies were only used to create a plugin for Konqueror, which Guix
does not include.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/kde-internet.scm (choqok)[inputs]: Remove kdewebkit and qtwebkit.
2022-01-29 18:16:48 -05:00
Leo Famulari
db17f8b502
gnu: fcitx5-chinese-addons: Replace the dependency on QtWebKit with QtWebEngine.
See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/fcitx5.scm (fcitx5-chinese-addons)[inputs]: Remove qtwebkit. Add
qtdeclarative, qtwebchannel, and qtwebengine.
[arguments]: Pass "-DUSE_WEBKIT=off" to #:configure-flags.
2022-01-29 17:59:30 -05:00
Leo Famulari
f8bfb2d856
gnu: texmaker: Don't depend on QtWebKit.
The program stopped using QtWebKit in version 5.0.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/tex.scm (texmaker)[inputs]: Remove qtwebkit.
2022-01-29 17:31:17 -05:00
Liliana Marie Prikler
07f45615c3
gnu: wpewebkit: Update to 2.34.3 [security fixes].
This update fixes all the security issues fixed upstream between
versions 2.30.5 and 2.34.3:

https://webkitgtk.org/news.html

* gnu/packages/webkit.scm (wpewebkit): Update to 2.34.3.
[#:phases]: Add ‘patch-cmake’ phase to fix an error in the install directories
of the documentation.
[inputs]: Add lcms.
2022-01-29 16:39:56 -05:00
Liliana Marie Prikler
f0bc429a52
gnu: wpebackend-fdo: Update to 1.12.0.
* gnu/packages/webkit.scm (wpebackend-fdo): Update to 1.12.0.
[build-system]: Use meson-build-system.
[inputs]: Add libepoxy.
2022-01-29 16:39:55 -05:00
Liliana Marie Prikler
c97e07be56
gnu: libwpe: Update to 1.12.0.
* gnu/packages/webkit.scm (libwpe): Update to 1.12.0.
[build-system]: Use meson-build-system.
2022-01-29 16:39:51 -05:00
Leo Famulari
08875dd556
gnu: WPE WebKit: Set the Common Platform Enumeration (CPE) name.
* gnu/packages/webkit.scm (wpewebkit)[properties]: New field.
2022-01-29 15:37:17 -05:00
Leo Famulari
0442d683c3
gnu: kdenlive: Don't depend on QtWebKit.
Kdenlive no longer uses QtWebKit.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/kde.scm (kdenlive)[inputs]: Remove qtwebkit.
2022-01-29 15:29:12 -05:00
Leo Famulari
9d13747fc2
gnu: nextcloud-client: Don't depend on QtWebKit.
This package propagates QtWebEngine and doesn't keep a reference to QtWebKit.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/sync.scm (qtwebkit)[inputs]: Remove qtwebkit.
[arguments]: Remove related #:configure-flag that is not recognized by
our version of nextcloud-client.
2022-01-29 13:38:56 -05:00
Marius Bakke
b6b0cfa2f8
tests: Add system test for TimescaleDB.
* gnu/tests/databases.scm (%timescaledb-os, run-timescaledb-test,
%test-timescaledb): New variables.
2022-01-29 16:09:03 +01:00
Marius Bakke
59847afda7
services: postgresql: Export missing <postgresql-configuration> accessor.
* gnu/services/databases.scm: Export POSTGRESQL-CONFIGURATION-EXTENSION-PACKAGES.
2022-01-29 16:09:03 +01:00
Marius Bakke
765be3dcef
tests: postgresql: Test the default PostgreSQL.
* gnu/tests/databases.scm (%postgresql-os): Change from POSTGRESQL-10 to
POSTGRESQL.
2022-01-29 16:09:03 +01:00
Marius Bakke
45681b89a8
gnu: zabbix: Update to 5.4.9.
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 5.4.9.
2022-01-29 12:52:38 +01:00
Marius Bakke
756f16aa01
services: zabbix-agent: Set the PATH variable.
* gnu/services/monitoring.scm (zabbix-agent-shepherd-service)[start]: Set the
PATH variable to the common values.
2022-01-29 12:52:38 +01:00
Marius Bakke
81873cbc5d
gnu: Add TimescaleDB.
* gnu/packages/databases.scm (timescaledb): New variable.
2022-01-29 12:52:38 +01:00
Marius Bakke
8fa6f975d4
services: zabbix-frontend: Adjust indentation.
* gnu/services/monitoring.scm (zabbix-front-end-activation): Reindent.
2022-01-29 12:52:37 +01:00
Marius Bakke
7f12a40e9a
services: zabbix-frontend: Enable IEEE754-compatible history values.
* gnu/services/monitoring.scm (zabbix-front-end-config): Specify
$DB['DOUBLE_IEEE754'] in the configuration file, as per current example.
2022-01-29 12:52:37 +01:00
Marius Bakke
5122805c48
services: zabbix-server: Add shepherd actions for runtime control commands.
* gnu/services/monitoring.scm (zabbix-server-runtime-control-procedure,
zabbix-server-actions): New variables.
(zabbix-server-shepherd-service)[actions]: New field.  Let-bind variables
common between actions and the start procedure.
2022-01-29 12:52:37 +01:00
Marius Bakke
0d347fe83e
gnu: zabbix-server: Use a sensible default for the "fping" executable.
* gnu/packages/monitoring.scm (zabbix-agentd)[source](modules, snippet): New
fields.
2022-01-29 12:52:37 +01:00
Marius Bakke
7971f88e83
gnu: fping: Enable IPv6 support.
* gnu/packages/networking.scm (fping)[arguments]: New field.
2022-01-29 12:52:37 +01:00
Marius Bakke
4657a39270
services: zabbix-frontend: Fix configuration file for hard coded passwords.
This is a follow-up to commit 078f5bfae7.

* gnu/services/monitoring.scm (zabbix-front-end-config): When DB-PASSWORD is
set, enclose the password with quotes in the configuration file.
2022-01-29 12:52:37 +01:00
Marius Bakke
171084792f
gnu: python-pydantic: Update to 1.9.0.
* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.9.0.
2022-01-29 12:52:37 +01:00
Liliana Marie Prikler
69218e84f1
.dir-locals.el: Don't mess up indentation of prepend and append.
The current version appears to assume special values in the first and second
package, but it's either all lists (default append) or all package input
expressions (inside modify-inputs), which themselves are either packages
or lists consisting of a package and a string.

* .dir-locals.el: Drop (eval . (put 'prepend 'scheme-indent-function 2))
and (eval . (put 'append 'scheme-indent-function 2)).
2022-01-29 08:47:38 +01:00