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126870 commits

Author SHA1 Message Date
Ricardo Wurmus 8dc6103399
gnu: r-missmethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.36.0.

Change-Id: I94d8bedcc262015a50d865191f0d4c70d96e77af
2023-11-03 22:49:21 +01:00
Ricardo Wurmus f7152456ee
gnu: r-minfi: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.48.0.

Change-Id: Iac319a3da6a8a434517e9286a8753cef7113c4c7
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 3bc5dbe892
gnu: r-milor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.10.0.

Change-Id: I20c89307a59ab7659a35fc1c5c4f2c5c10cf7181
2023-11-03 22:49:20 +01:00
Ricardo Wurmus a997efca8c
gnu: r-microbiome: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.24.0.

Change-Id: Ifca782fec5346f00a866daaaf10760a962e5a36e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus c192f994c4
gnu: r-mia: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.10.0.
[propagated-inputs]: Add r-bluster and r-matrixgenerics.

Change-Id: I667de5184501a283f1090f3e49cd796537177882
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 919fad614e
gnu: r-bumpymatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.10.0.

Change-Id: I9ce9b6d0e765dcef1ef9b7eaa8ceadca19ba66f3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus e2f2927666
gnu: r-bumphunter: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.44.0.

Change-Id: I259937e8d0e7934986b174b0607411ffe1e62bde
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 9d69d64b46
gnu: r-siggenes: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.76.0.

Change-Id: I89ebcf7df2771f8ab19bd74d93ba15b72e1a70a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 54a13eff99
gnu: r-illuminaio: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.44.0.

Change-Id: I8da181164ac8e9c98ecc892a7d1fe878cdced4f0
2023-11-03 22:49:20 +01:00
Ricardo Wurmus cb94125b4c
gnu: r-geoquery: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.70.0.

Change-Id: I9d58b9ed1ad004177a354c7c688ec431368373f8
2023-11-03 22:49:20 +01:00
Ricardo Wurmus dffab6110f
gnu: r-scone: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.26.0.

Change-Id: Iae18ed324d7925e647a664e1547fa0eeaedab6a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 61a2dc87d8
gnu: r-scdd: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.26.0.

Change-Id: I631b260c9a8069fc88140c2a0c9f700f1f321a1a
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 005c3a7ec9
gnu: r-noiseq: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.46.0.

Change-Id: Ie5e5043de7def381411ae1637ebc224f82818eee
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 444871c0f2
gnu: r-sangerseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.38.0.

Change-Id: I53de38940e7ce55f35de24e2f9b5dbf83fcc4f90
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 1b63a91e57
gnu: r-monocle: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.0.

Change-Id: Ib0a52eae3545712f3b96e42addf2d9c647eb29f9
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 0c92b1d860
gnu: r-mast: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.28.0.

Change-Id: I53175447d543c51fba4bf34a11cbebfabf483d61
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 22b1839f1a
gnu: r-batchelor: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.0.

Change-Id: I0d8513f7d4ba32a5c642afce49724b0e88954b40
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 7af7d3d4e2
gnu: r-residualmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.12.0.

Change-Id: I011255d102774dfc396e41102f6f3fe4c90b9b2b
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 1d4787f8fa
gnu: r-icobra: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.30.0.

Change-Id: I952db827b7b11d54004aadff3420a9a6ca595141
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 82d8784abe
gnu: r-ihw: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.30.0.

Change-Id: Iee49effa9aa29957af7823a93712e459ca249975
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 09d9d27c6a
gnu: r-lpsymphony: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.30.0.
[native-inputs]: Remove gfortran.

Change-Id: I404d33ce76764d76e6cc5f50ce297c2cab193d52
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 5b36a69e0f
gnu: r-karyoploter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.28.0.

Change-Id: I22ef7507f4255cee55c502117994fe96e63458e5
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 9e5d778400
gnu: r-ebseq: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.0.0.
[propagated-inputs]: Add r-bh, r-rcpp, and r-rcppeigen.

Change-Id: I013ea3d56a794c0dc28e159b787b7615ff5ebadd
2023-11-03 22:49:20 +01:00
Ricardo Wurmus c0ea127d3f
gnu: r-dnacopy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.76.0.

Change-Id: Iba9ff03065138d1fbd295b28d91c06f5596e2048
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 819eb5ca24
gnu: r-chipexoqual: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.26.0.

Change-Id: I1246ce25e9da6aed07d52683e0f8bec677c6a41e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 02ddd7963b
gnu: r-destiny: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.16.0.

Change-Id: I3c22657e57062e00b135e94c764db7f5fbce4a41
2023-11-03 22:49:20 +01:00
Ricardo Wurmus dd6e945cb4
gnu: r-biocsingular: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.18.0.

Change-Id: If1228bfbe2b4a8bd84de6c645356ea35ed632262
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 1672a49c4e
gnu: r-metapod: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.0.

Change-Id: I6ae84bb0ab8e68833206b214046a0144f60ae3cb
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 8aeaa84e2a
gnu: r-ggtree: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.10.0.

Change-Id: Iec5a7eb16425f5c3dbe2d457a71e70c74eb1b159
2023-11-03 22:49:20 +01:00
Ricardo Wurmus 74253229f1
gnu: r-treesummarizedexperiment: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.10.0.

Change-Id: I287f495062c808354edef562d6844d8bb43cfaef
2023-11-03 22:49:20 +01:00
Ricardo Wurmus a7cd80eaf1
gnu: r-treeio: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.26.0.
[propagated-inputs]: Remove r-cli.

Change-Id: I7776d679c5af2e622451204ea586c297d4287389
2023-11-03 22:49:20 +01:00
Ricardo Wurmus b8daed53af
gnu: r-scaledmatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.10.0.

Change-Id: I50c8d29395648059e815c2e9ca2d3a07d17d2aba
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 69bd0f8752
gnu: r-biocneighbors: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.0.

Change-Id: I0e0dd9c4b2d1a4077176614814ef40a3f8c26e30
2023-11-03 22:49:19 +01:00
Ricardo Wurmus f9b3ee2f5f
gnu: r-ruvseq: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.36.0.

Change-Id: Iadb6c4c38b63a986bb845a482d00f8444b47b6ef
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 9ac392fc93
gnu: r-dnabarcodes: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.32.0.

Change-Id: I7b454a6429b4e7677c300607c794180364d61bb2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 642b3c3e27
gnu: r-inspect: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.31.0.

Change-Id: I05f8e69565de977045a28a6045e1dfe131ef4b09
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 81d0dedf9a
gnu: r-plyranges: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.22.0.

Change-Id: Idb42fef9913b8a1b6600a544928f39ec4b7b16fd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 7aee11f63e
gnu: r-plgem: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.74.0.

Change-Id: I11d5554e5b7833540bcbe327d73240844e816573
2023-11-03 22:49:19 +01:00
Ricardo Wurmus a5eefabd87
gnu: r-rots: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.30.0.

Change-Id: Ia13e99ece1a38eac6a5e370fa18da0ca93e4c962
2023-11-03 22:49:19 +01:00
Ricardo Wurmus e0031de95b
gnu: r-glmgampoi: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.0.

Change-Id: Iaa42254b9765e0942e045f19c15b0b9c04936235
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 3e8ae47f0d
gnu: r-glimma: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.12.0.

Change-Id: I075f2b5990724ab8e2e15e88b6ed5acd75a76e80
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 1a27f050be
gnu: r-goseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.54.0.

Change-Id: I42576c75b508d8a31f26042d148065896b65a6f2
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 256a5afa3f
gnu: r-ctc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.76.0.

Change-Id: I71627e23e977d69582ac593e35f7306491e04f92
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 4dd7a424bf
gnu: r-genomicinteractions: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.36.0.

Change-Id: I285ad15b9019c128b78bf0f42158f1275b0e3ee0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 3d30484b1c
gnu: r-interactionset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.30.0.

Change-Id: I03fd7532d9f32550f50a31c42f32ac2f23dcf12f
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 89937f497b
gnu: r-riboseqr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.36.0.

Change-Id: I2a1c843c0174fe058373d80e7a5fc1ecb301d900
2023-11-03 22:49:19 +01:00
Ricardo Wurmus a44c944971
gnu: r-riboprofiling: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.32.0.

Change-Id: I226116cdc9408f294d4baca51b341e97a6a99e84
2023-11-03 22:49:19 +01:00
Ricardo Wurmus c7f6a7e802
gnu: r-chipcomp: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.32.0.

Change-Id: I2229de3fc55e54de3a2157e7210ae2981fe0e5f0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 89f04f09de
gnu: r-bayseq: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.0.

Change-Id: I45768d7f3f6197834df60816697c425166ba49ac
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 11b594314a
gnu: r-qdnaseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.38.0.

Change-Id: I057ba767886780632acb14af13402ce00c1775cd
2023-11-03 22:49:19 +01:00