Commit graph

81309 commits

Author SHA1 Message Date
Paul A. Patience
4a136a3b7f
gnu: dealii: Update to 9.3.1 and clean up.
The cleanup notably:

* Builds and installs the documentation into a separate doc output (in
the process moving around some files erroneously installed into the root
directory); and
* Removes unnecessary inputs and moves some inputs into
propagated-inputs (the candidates of which were determined with a search
for "include.*LIBNAME" in include/deal.II).

* gnu/packages/maths.scm (dealii): Reword comments.
[version]: Update to 9.3.1.
[outputs]: New field including doc output.
[native-inputs]: New field.
[inputs]: Sort them. Remove p4est (deal.II interfaces with it only when
MPI is enabled). Move boost, suitesparse and tbb to...
[propagated-inputs]: ...here. New field including hdf5, which is
actually supported in deal.II without MPI.
[arguments]<#:tests?>: New argument. The tests were not being run before
anyway.
<#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag.
[-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md,
README.md, detailed.log and summary.log files from being installed in
the root directory (though note that the logs are removed in the new
remove-build-logs phase).
[-DDEAL_II_DOCHTML_RELDIR]: New flag.
[-DDEAL_II_COMPILE_EXAMPLES]: New flag.
[-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory
from being installed in the root directory.
[-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been
resolved.
<#:phases>{remove-build-logs}: New phase.
[home-page]: Add trailing slash.
(dealii-openmpi): Use package/inherit.
[inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer
interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi,
p4est-openmpi, petsc-openmpi and slepc-openmpi to...
[propagated-inputs]: ...here. New field.
[arguments]<#:configure-flags>: Rename cf variable to flags.
<#:phases>{mpi-setup}: Remove phase which is unused because the tests
are disabled.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-20 22:36:51 +02:00
Efraim Flashner
2c1cdbb19b
gnu: xorg.scm: Add missing module import.
This is a follow-up to 1a4c7ddefe.

* gnu/packages/xorg.scm: Add missing module import.
2021-07-20 22:19:12 +03:00
Tanguy Le Carrour
526171269d
gnu: Add python-tldr.
* gnu/packages/python-xyz.scm (python-tldr): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 22:10:35 +03:00
Efraim Flashner
e2dae72dab
gnu: rust-openssl-sys-extras-0.7: Skip build.
* gnu/packages/crates-io.scm (rust-openssl-sys-extras-0.7)
[arguments]: Skip build.
[inputs]: Remove openssl-1.0.
2021-07-20 22:04:40 +03:00
Efraim Flashner
7f43bc6839
gnu: rust-openssl-0.7: Skip build.
* gnu/packages/crates-io.scm (rust-openssl-0.7)[arguments]: Skip build.
Remove tests keyword.
[inputs]: Remove openssl-1.0.
2021-07-20 22:02:59 +03:00
Efraim Flashner
3f403bb750
gnu: rust-sha1-0.2: Skip tests.
* gnu/packages/crates-io.scm (rust-sha1-0.2)[arguments]: Skip tests.
[inputs]: Remove openssl-1.0.
2021-07-20 21:59:56 +03:00
Efraim Flashner
d68d84ee19
gnu: gpodder: Make the check phase honor the tests? argument.
* gnu/packages/gpodder.scm (gpodder)[arguments]: Adjust custom 'check
phase to skip tests when #:tests? is #f.
2021-07-20 21:41:48 +03:00
Efraim Flashner
c4413569f7
gnu: gpodder: Add bash-minimal.
* gnu/packages/gpodder.scm (gpodder)[inputs]: Add bash-minimal.
2021-07-20 21:41:48 +03:00
raingloom
a2f8ec94f6
gnu: gpodder: Add python-mutagen (fixes one of its addons).
* gnu/packages/gpodder.scm (gpodder)[inputs]: Added python-mutagen.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 21:39:51 +03:00
Efraim Flashner
1a4c7ddefe
gnu: xpra: Add bash-minimal.
* gnu/packages/xorg.scm (xpra)[inputs]: Add bash-minimal.
2021-07-20 21:16:09 +03:00
Matthew James Kraai
a4d9002bec
gnu: xpra: Update to 4.2.1.
* gnu/packages/xorg.scm (xpra): Update to 4.2.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 21:13:52 +03:00
Raghav Gururajan
e644e45aec
gnu: pipe-viewer: Correct references to youtube-dl program.
* gnu/packages/videos.scm (pipe-viewer)[phases](patch-source): Modify.
2021-07-20 07:54:56 -04:00
Raghav Gururajan
7b9c4417d5
gnu: claws-mail: Use absolute paths to referenced programs.
* gnu/packages/mail.scm (claws-mail)[phases](patch-source): New phase.
[inputs]: Add mailutils and sendmail.
2021-07-20 06:03:36 -04:00
Efraim Flashner
541066a02f
gnu: python-graph-tool: Sort inputs alphabetically.
* gnu/packages/graph.scm (python-graph-tool)[native-inputs]: Sort
alphabetically.
[inputs]: Same.
[propagated-inputs]: Same.
2021-07-20 12:01:20 +03:00
Alexandre Hannud Abdo
b8e7b284fc
gnu: Add sequeler.
* gnu/packages/databases.scm (sequeler): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 12:01:20 +03:00
Alexandre Hannud Abdo
ac840442ee
gnu: python-graph-tool: Update to 2.43.
* gnu/packages/graph.scm (python-graph-tool): Update to 2.43.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 11:59:54 +03:00
Paul A. Patience
59d09bfb2b
gnu: txr: Update to 266.
* gnu/packages/lisp.scm (txr)[version]: Update to 266.
  [inputs]: Add bash.
  [arguments]<#:phases>{inhibit-doc-syms-generation}: Correct the path to
  doc-syms.tl to its new location.
  {fix-tests}: Fix another test.
  {fix-paths}: New phase.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 10:50:04 +02:00
Paul A. Patience
6a0658afa7
gnu: txr: Fix license installation.
The install-license-files phase was installing LICENSE-CYG when it
shouldn't have, because that license applies only to TXR builds for
Microsoft Windows; and it was also ignoring the METALICENSE file.
However, TXR's Makefile was already installing the LICENSE and
METALICENSE files into share/txr (the datadir), so redirect them into
the appropriate doc directory and delete the install-license-files
phase.

* gnu/packages/lisp.scm (txr)[arguments]<#:phases>
  {fix-license-installation}: New phase.
  {install-license-files}: Delete phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 10:09:33 +02:00
Paul A. Patience
75922458af
gnu: txr: Build documentation.
* gnu/packages/lisp.scm (man-for-txr): New variable.
  (txr)[native-inputs]: New field.
  [inputs]: Move above the arguments field.
  [arguments]<#:phases>{inhibit-doc-syms-generation, build-doc, install-doc}:
  New phases.
  {fix-tests}: Add after the unpack phase rather than after the configure
  phase so that all file-modifying phases are performed after unpacking.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 10:03:30 +02:00
Charles
e1f9a10fdc
gnu: cl-authentic: Update to 0.1.2-2.4e9194d.
* gnu/packages/lisp-xyz.scm (sbcl-authentic): Update to 0.1.2-2.4e9194d.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-07-20 09:54:20 +02:00
Jonathan Brielmaier
d84c24935b
gnu: icedove: Update to 78.12.0 [security fixes].
Fixes CVE-2021-29969 and CVE-2021-29976.

* gnu/packages/gnuzilla.scm (icedove): Update to 78.12.0.
2021-07-19 21:19:32 +02:00
Vinicius Monego
52058a1144
gnu: Add searx.
* gnu/packages/search.scm (searx): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:52 +02:00
Vinicius Monego
c65183b628
gnu: Add python-langdetect.
* gnu/packages/python-xyz.scm (python-langdetect): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:52 +02:00
Paul A. Patience
6bd1d4a18b
gnu: Add nomad-optimizer.
* gnu/packages/maths.scm (nomad-optimizer): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:52 +02:00
Franck Pérignon
aa1b756723
gnu: Add python-pyhull.
* gnu/packages/python-xyz.scm (python-pyhull): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:51 +02:00
Ryan Prior
de50ff13de
gnu: visidata: Update to 2.5.
* gnu/packages/visidata.scm (visidata): Update to 2.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:51 +02:00
Vinicius Monego
5e437ce812
gnu: Add emacs-jupyter.
* gnu/packages/emacs-xyz.scm (emacs-jupyter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:51 +02:00
Vinicius Monego
3436d3f801
gnu: Add emacs-zmq.
* gnu/packages/emacs-xyz.scm (emacs-zmq): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:51 +02:00
Vinicius Monego
f8790ba4b4
gnu: zeromq: Enable DRAFTs.
* gnu/packages/networking.scm (zeromq)[arguments]<#:configure-flags>: Pass
--enable-drafts.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:51 +02:00
itd
51157d474f
import/print: package->code: Fix license object.
* guix/import/print.scm (package->code)<license->code>: Update generated
licence object to match record constructor.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-19 19:57:51 +02:00
Morgan Smith
703f932cc9
gnu: Add powercap.
* gnu/packages/linux.scm (powercap): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-19 16:28:08 +03:00
Kyle Meyer
4cda5a4dab
gnu: git-annex: Update to 8.20210714.
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210714.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-19 15:36:29 +03:00
Charles
385c485c65
build: Update uglifyjs for minify-build-system.
* guix/build-system/minify.scm (default-uglify-js): Update uglifyjs package used.
* guix/build/minify-build-system.scm (minify): Use updated uglifyjs command name.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-19 14:46:28 +03:00
Charles
d16148fcfd
gnu: Add node-uglify-js.
* gnu/packages/uglifyjs.scm (node-uglify-js, uglifyjs): New variables.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-19 14:43:29 +03:00
Charles
bfa847dbe0
gnu: Add node-acorn.
* gnu/packages/node-xyz.scm (node-acorn): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-19 14:28:52 +03:00
Efraim Flashner
0f46e0b79c
gnu: evisum: Update to 0.5.13.
* gnu/packages/enlightenment.scm (evisum): Update to 0.5.13.
[arguments]: Add phase to set homedir.
2021-07-19 09:44:36 +03:00
Raghav Gururajan
00c8a28512
gnu: gspell: Propagate glib and gtk+, as per pkg-config file.
* gnu/packages/gnome.scm (gspell)[inputs]: Move glib and gtk+ to ...
[propagated-inputs]: ... here.
2021-07-18 22:05:14 -04:00
Raghav Gururajan
53e445c463
gnu: libxscrnsaver: Propagate libx11 and libxext, as per pkg-config file.
* gnu/packages/xorg.scm (libxscrnsaver)[inputs]: Move libx11 and libxext to ...
[propagated-inputs]: ... here.
2021-07-18 21:52:38 -04:00
Raghav Gururajan
2fbffcf575
gnu: Add omemo-wget.
* gnu/packages/messaging.scm (omemo-wget): New variable.
2021-07-18 20:59:04 -04:00
Tobias Geerinckx-Rice
5d2e3b6b23
gnu: mg: Set PKG_CONFIG instead of substituting.
* gnu/packages/text-editors.scm (mg)[arguments]: Add PKG_CONFIG
to #:make-flags, and remove the custom
'pkg-config-for-cross-compiling-target phase.
2021-07-18 20:28:17 +02:00
Tobias Geerinckx-Rice
7f2b9306ee
gnu: mg: Fix reference to native diffutils.
* gnu/packages/text-editors.scm (mg)[inputs]: Add diffutils.
[arguments]: Refer to it in the 'correct-location-of-diff phase.
2021-07-18 20:28:17 +02:00
Guillaume Le Vaillant
8b1bde7bb3
gnu: sdrangel: Update to 6.16.1.
* gnu/packages/radio.scm (sdrangel): Update to 6.16.1.
2021-07-18 14:58:06 +02:00
Guillaume Le Vaillant
848a9a1e3f
gnu: dump1090: Update to 5.0.
* gnu/packages/radio.scm (dump1090): Update to 5.0.
  [inputs]: Add hackrf.
2021-07-18 13:38:40 +02:00
Xinglu Chen
71dffaacbf
gnu: emacs-pyim: Update to 3.9.2.
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-07-18 17:46:57 +08:00
phodina
9cddd39d75
gnu: Add sterm.
* gnu/packages/engineering.scm (sterm): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-07-18 17:40:17 +08:00
Maxim Cournoyer
c170abba47
build: pack: Mute error output when checking if tar supports --sort.
* guix/build/pack.scm (tar-base-options) [tar-supports-sort?]: Redirect error
output to void.
2021-07-18 02:11:13 -04:00
Maxim Cournoyer
11f0698243
pack: Streamline how files are included in tarballs.
Thanks to Guillem Jover <guillem@debian.org> on the OFTC's #debian-dpkg
channel for helping with troubleshooting.

Letting GNU Tar recursively walk the complete files hierarchy side-steps the
risks associated with providing a list of file names:

1. Duplicated files in the archive (recorded as hard links by GNU Tar)
2. Missing parent directories.

The above would cause dpkg to malfunction, for example by aborting early and
skipping triggers when there were missing parent directories.

* guix/scripts/pack.scm (self-contained-tarball/builder): Do not call
POPULATE-SINGLE-PROFILE-DIRECTORY, which creates extraneous files such as
/root.  Instead, call POPULATE-STORE and INSTALL-DATABASE-AND-GC-ROOTS
individually to more precisely generate the file system.  Replace the list of
files by the current directory, "." and streamline the way options are passed.
* gnu/system/file-systems.scm (reduce-directories): Remove procedure.
* tests/file-systems.scm ("reduce-directories"): Remove test.
2021-07-18 02:10:49 -04:00
Maxim Cournoyer
b019496fc3
pack/deb: Add default section and priority fields to the control file.
These fields, while optional per dpkg, are required by other tools such as
reprepro, commonly used to generate apt repositories.

* guix/scripts/pack.scm (debian-archive): Set the control file section field
to 'misc' and the priority field to 'optional'.
2021-07-18 02:02:34 -04:00
Maxim Cournoyer
aeded14b83
pack: Allow embedding custom control files in deb packs.
* guix/scripts/pack.scm (self-contained-tarball/builder)
[extra-options]: New argument.
(self-contained-tarball, squashfs-image, docker-image)
(debian-archive): Likewise.  Remove two TODO comments.  Document
EXTRA-OPTIONS.  Use the custom control files when provided.
(%deb-format-options): New variable.
(show-deb-format-options, show-deb-format-options/detailed): New procedures.
(%options): Register new options.
(show-help): Augment with new usage.
(guix-pack): Validate and propagate new argument values.
* doc/guix.texi (Invoking guix pack)[deb]: Document how to list advanced
options.  Add an example.
* tests/pack.scm (deb archive...): Provide extra-options to the debian-archive
procedure, and validate that the provided files are embedded in the pack.
2021-07-18 02:02:34 -04:00
Maxim Cournoyer
15b4372b60
import: go: Fix indentation.
* guix/import/go.scm: Fix indentation.
2021-07-18 01:57:17 -04:00