gnu: dealii: Update to 9.3.1 and clean up.
The cleanup notably:
* Builds and installs the documentation into a separate doc output (in
the process moving around some files erroneously installed into the root
directory); and
* Removes unnecessary inputs and moves some inputs into
propagated-inputs (the candidates of which were determined with a search
for "include.*LIBNAME" in include/deal.II).
* gnu/packages/maths.scm (dealii): Reword comments.
[version]: Update to 9.3.1.
[outputs]: New field including doc output.
[native-inputs]: New field.
[inputs]: Sort them. Remove p4est (deal.II interfaces with it only when
MPI is enabled). Move boost, suitesparse and tbb to...
[propagated-inputs]: ...here. New field including hdf5, which is
actually supported in deal.II without MPI.
[arguments]<#:tests?>: New argument. The tests were not being run before
anyway.
<#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag.
[-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md,
README.md, detailed.log and summary.log files from being installed in
the root directory (though note that the logs are removed in the new
remove-build-logs phase).
[-DDEAL_II_DOCHTML_RELDIR]: New flag.
[-DDEAL_II_COMPILE_EXAMPLES]: New flag.
[-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory
from being installed in the root directory.
[-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been
resolved.
<#:phases>{remove-build-logs}: New phase.
[home-page]: Add trailing slash.
(dealii-openmpi): Use package/inherit.
[inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer
interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi,
p4est-openmpi, petsc-openmpi and slepc-openmpi to...
[propagated-inputs]: ...here. New field.
[arguments]<#:configure-flags>: Rename cf variable to flags.
<#:phases>{mpi-setup}: Remove phase which is unused because the tests
are disabled.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
Paul A. Patience
Ludovic Courtès
parent
2c1cdbb19b
commit
4a136a3b7f
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@ -4610,40 +4610,75 @@ (define-public lpsolve
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(define-public dealii
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(package
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(name "dealii")
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(version "9.2.0")
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(version "9.3.1")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://github.com/dealii/dealii/releases/"
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"download/v" version "/dealii-" version ".tar.gz"))
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(sha256
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(base32
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"0fm4xzrnb7dfn4415j24d8v3jkh0lssi86250x2f5wgi83xq4nnh"))
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(base32 "1f0sqvlxvl0myqcn0q6xrn1vnp5pgx143lai4a4jkh1dmdv4cbx6"))
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(modules '((guix build utils)))
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(snippet
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;; Remove bundled sources: UMFPACK, TBB, muParser, and boost
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'(begin
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;; Remove bundled boost, muparser, TBB and UMFPACK.
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(delete-file-recursively "bundled")
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#t))))
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(build-system cmake-build-system)
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(outputs '("out" "doc"))
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(native-inputs
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;; Required to build the documentation.
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`(("dot" ,graphviz)
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("doxygen" ,doxygen)
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("perl" ,perl)))
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(inputs
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`(("tbb" ,tbb)
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("zlib" ,zlib)
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("boost" ,boost)
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("p4est" ,p4est)
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`(("arpack" ,arpack-ng)
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("blas" ,openblas)
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("lapack" ,lapack)
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("arpack" ,arpack-ng)
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("muparser" ,muparser)
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("gfortran" ,gfortran)
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("suitesparse" ,suitesparse))) ;for UMFPACK
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("lapack" ,lapack)
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("muparser" ,muparser)
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("zlib" ,zlib)))
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(propagated-inputs
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;; Some scripts are installed into share/deal.II/scripts that require
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;; perl and python, but they are not executable (and some are missing the
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;; shebang line) and therefore must be explicitly passed to the
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;; interpreter.
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;; Anyway, they are meant to be used at build time, so rather than adding
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;; the interpreters here, any package depending on them should just add
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;; the requisite interpreter to its native inputs.
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`(("boost" ,boost)
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("hdf5" ,hdf5)
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("suitesparse" ,suitesparse) ; For UMFPACK.
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("tbb" ,tbb)))
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(arguments
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`(#:build-type "DebugRelease" ;only supports Release, Debug, or DebugRelease
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`(#:build-type "DebugRelease" ; Supports only Debug, Release and DebugRelease.
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;; The tests take too long and must be explicitly enabled with "make
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;; setup_tests".
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;; See https://www.dealii.org/developer/developers/testsuite.html.
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;; (They can also be run for an already installed deal.II.)
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#:tests? #f
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#:configure-flags
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;; Work around a bug in libsuitesparseconfig linking
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;; see https://github.com/dealii/dealii/issues/4745
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'("-DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON")))
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(home-page "https://www.dealii.org")
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(let ((doc (string-append (assoc-ref %outputs "doc")
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"/share/doc/" ,name "-" ,version)))
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`("-DDEAL_II_COMPONENT_DOCUMENTATION=ON"
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,(string-append "-DDEAL_II_DOCREADME_RELDIR=" doc)
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,(string-append "-DDEAL_II_DOCHTML_RELDIR=" doc "/html")
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;; Don't compile the examples because the source and CMakeLists.txt
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;; are installed anyway, allowing users to do so for themselves.
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"-DDEAL_II_COMPILE_EXAMPLES=OFF"
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,(string-append "-DDEAL_II_EXAMPLES_RELDIR=" doc "/examples")))
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#:phases
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(modify-phases %standard-phases
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(add-after 'install 'remove-build-logs
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;; These build logs leak the name of the build directory by storing
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;; the values of CMAKE_SOURCE_DIR and CMAKE_BINARY_DIR.
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((doc (string-append (assoc-ref outputs "doc")
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"/share/doc/" ,name "-" ,version)))
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(for-each delete-file (map (lambda (f) (string-append doc "/" f))
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'("detailed.log" "summary.log"))))
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#t)))))
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(home-page "https://www.dealii.org/")
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(synopsis "Finite element library")
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(description
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"Deal.II is a C++ program library targeted at the computational solution
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@ -4654,30 +4689,24 @@ (define-public dealii
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(license license:lgpl2.1+)))
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(define-public dealii-openmpi
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(package (inherit dealii)
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(package/inherit dealii
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(name "dealii-openmpi")
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(inputs
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`(("mpi" ,openmpi)
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;;Supported only with MPI:
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("hdf5" ,hdf5-parallel-openmpi) ;TODO: have petsc-openmpi propagate?
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`(("arpack" ,arpack-ng-openmpi)
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("metis" ,metis)
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("scalapack" ,scalapack)
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,@(alist-delete "arpack" (package-inputs dealii))))
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(propagated-inputs
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`(("hdf5" ,hdf5-parallel-openmpi)
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("mpi" ,openmpi)
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("p4est" ,p4est-openmpi)
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("petsc" ,petsc-openmpi)
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("slepc" ,slepc-openmpi)
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("metis" ,metis) ;for MUMPS
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("scalapack" ,scalapack) ;for MUMPS
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("mumps" ,mumps-metis-openmpi) ;configure supports only metis orderings
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("arpack" ,arpack-ng-openmpi)
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,@(fold alist-delete (package-inputs dealii)
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'("p4est" "arpack"))))
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,@(alist-delete "hdf5" (package-propagated-inputs dealii))))
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(arguments
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(substitute-keyword-arguments (package-arguments dealii)
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((#:configure-flags cf)
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`(cons "-DDEAL_II_WITH_MPI:BOOL=ON"
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,cf))
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((#:phases phases '%standard-phases)
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`(modify-phases ,phases
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(add-before 'check 'mpi-setup
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,%openmpi-setup)))))
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((#:configure-flags flags)
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`(cons "-DDEAL_II_WITH_MPI=ON" ,flags))))
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(synopsis "Finite element library (with MPI support)")))
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(define-public flann
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