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Author SHA1 Message Date
Pavel Shlyak 8b680b00d4
image: Add fat32 support. 
* gnu/build/image.scm (make-vfat-image): Pass fs-bits as an argument and force
1kb logical sector size only if "ESP" flag is set.
(make-partition-image): Add "fat32" partition type, support explicit "fat16"
type with vfat alias.
* gnu/system/image.scm (partition->dos-type partition): Return file system IDs
for "fat16" and "fat32" partitions.
(partition->gpt-type partition): Ditto.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-05-31 14:51:13 +02:00
yarl baudig 6169c582d1
gnu: emacs-helpful: Update to 0.19 
* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19.
[source]: Use the patch.
* gnu/local.mk (dist_patch_DATA): Register the patch.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-05-31 06:16:18 +02:00
Pierre Langlois b8fc3403d3
gnu: gandi.cli: Fix by downgrading python-click. 
* gnu/packages/python-xyz.scm (python-click-7): New variable.
* gnu/packages/networking.scm (gandi.cli)[inputs]: Depend on python-click-7.
 2022-05-30 22:18:21 +01:00
Pierre Langlois f12d08c6d2
gnu: python-click@8: Remove redundant package. 
The python-click package is already version 8.

* gnu/packages/python-xyz.scm (python-click-8): Remove variable.
(python-proselint)[propagated-inputs]: Depend on python-click.
 2022-05-30 22:18:12 +01:00
Ricardo Wurmus 0bcd28e58c
gnu: python-scanpy: Update to 1.9.1. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.9.1.
[arguments]: Add phase 'set-numba-cache-dir; disable more broken tests.
[propagated-inputs]: Add python-dask and python-session-info; replace
python-louvain-0.7 with python-louvain.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus ca2516f065
gnu: python-leidenalg: Update to 0.8.10. 
* gnu/packages/graph.scm (python-leidenalg): Update to 0.8.10.
[arguments]: Patch setup.py.
[native-inputs]: Remove python-setuptools; add python-setuptools-scm.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus 7c8f3dfa34
gnu: python-dask: Update to 2022.05.2. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2022.05.2.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus 1257c4c663
gnu: Add python-session-info. 
* gnu/packages/python-xyz.scm (python-session-info): New variable.
 2022-05-30 23:09:46 +02:00
Ricardo Wurmus 216fb59b9b
gnu: non-sequencer: Update to 1.9.5-5.257ec59. 
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-5.257ec59.
[source]: Use fork as old repository is defunct; use git-file-name and
git-version.
[arguments]: Remove python-2; add phase to replace bundled waf.
[native-inputs]: Add python-waf.
(non-session-manager)[native-inputs]: Add python-waf.
(non-mixer)[inputs]: Add lv2 and lilv.
[native-inputs]: Add python-waf.
(non-timeline)[native-inputs]: Add python-waf.
 2022-05-30 23:09:46 +02:00
Liliana Marie Prikler df43e8d45c
gnu: quodlibet: Correct wrappers. 
* gnu/packages/music.scm (quodlibet)[#:phases]: Rename ‘wrap-gi-typelib’ to
‘wrap-extra-paths’.  Use ‘=’ for GI_TYPELIB_PATH.  Add
‘GST_PLUGIN_SYSTEM_PATH’ with suffix binding.
 2022-05-30 21:28:53 +02:00
Ludovic Courtès fed51b2614
gnu: calceph: Add 'release-monitoring-url' property. 
* gnu/packages/astronomy.scm (calceph)[properties]: New field.
 2022-05-30 16:34:41 +02:00
Sharlatan Hellseher d730bbbbb3
gnu: Add calceph. 
* gnu/packages/astronomy.scm (calceph): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Kyle Meyer 8d5b27cae9
gnu: emacs-vterm: Update to 0.0.1-1.b447235. 
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0.0.1-1.b447235.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
ykonai 5e5e37fbc4
gnu: rspamd: Update to 3.2 
* gnu/packages/mail.scm (rspamd): Update to 3.2

I also added a new build option, that changes the LOCAL_CONFDIR variable to
/etc/rspamd. This allows for rspamd configuration via the /etc/rspamd/local.d
and override.d directories, which by default were located in the PREFIX which
is in /gnu/store.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
jgart b67fd51902
gnu: pre-commit: Update to 2.19.0. 
* gnu/packages/version-control.scm (pre-commit): Update to 2.19.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Rene Saavedra 38f3d38ead
gnu: xpad: Update to 5.8.0. 
* gnu/packages/gnome.scm (xpad): Update to 5.8.0.
[inputs]: Replace gtksourceview-3 with gtksourceview.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Greg Hogan 092ee35155
gnu: casync: Update to 99559cd1. 
* gnu/packages/sync.scm (casync): Update to 99559cd1.
[source]: Remove patch.
[arguments]: Fix installation.
[native-inputs]: Add python.
[inputs]: Add eudev.
* gnu/packages/patches/casync-renameat2-declaration.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:40 +02:00
Greg Hogan 7d8f6a5db5
gnu: rsync: Update to 3.2.4. 
* gnu/packages/rsync.scm (rsync): Update to 3.2.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:39 +02:00
Morgan Smith 3f31525546
gnu: GCC: Add cross environment variables patch to GCC 12. 
* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add
gcc-12-cross-environment-variables.patch.
* gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-30 16:34:39 +02:00
Ludovic Courtès 56dddd05e8
gnu: emacs-w3m: Update to 20220508.2259. 
* gnu/packages/emacs-xyz.scm (emacs-w3m): Update to 20220508.2259.
[source]: Switch to 'git-fetch'.
 2022-05-30 16:34:39 +02:00
Ludovic Courtès 7750f220be
gnu: tor: Record the file name of 'torsocks' in 'torify'. 
* gnu/packages/tor.scm (tor)[arguments]: Add 'adjust-torify' phase.
[inputs]: Add TORSOCKS.
 2022-05-30 16:34:39 +02:00
Ludovic Courtès 61d4f9e89d
tests: Adjust crate importer test to spdx changes. 
This is a followup to 95b0544fcf.

* tests/crate.scm ("licenses: MIT/Apache-2.0 AND BSD-2-Clause"): Adjust
expected result.
 2022-05-30 16:34:39 +02:00
Ludovic Courtès 1ae0e1dc29
store: 'map/accumulate-builds' preserves caches. 
Fixes <https://issues.guix.gnu.org/55721>.

Starting from the switch to functional object caches ca.
9e5812ac59, we would be losing accumulated
caches when aborting to the build handler.  This patch fixes that.

In particular, by preserving '%reference-cache-id', we avoid redundant
'query-references' RPCs, which accounted for a large part of the extra
processing time.

* guix/store.scm (build-accumulator): When returning an <unresolved>
node, call 'set-store-connection-caches!' before and after to preserve
caches.
(map/accumulate-builds): Pass STORE as the first argument to
the <unresolved> continuation.
 2022-05-30 16:34:39 +02:00
Ricardo Wurmus 281bf72745
gnu: r-lmom: Update to 2.9. 
* gnu/packages/statistics.scm (r-lmom): Update to 2.9.
 2022-05-30 15:35:04 +02:00
Ricardo Wurmus eba783130f
gnu: r-chron: Update to 2.3-57. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-57.
 2022-05-30 15:34:59 +02:00
Ricardo Wurmus 85e77d93ac
gnu: r-tree: Update to 1.0-42. 
* gnu/packages/cran.scm (r-tree): Update to 1.0-42.
 2022-05-30 15:34:52 +02:00
Ricardo Wurmus 440bd1b617
gnu: r-parameters: Update to 0.18.1. 
* gnu/packages/cran.scm (r-parameters): Update to 0.18.1.
 2022-05-30 15:34:46 +02:00
Ricardo Wurmus 0880acbcb5
gnu: r-clue: Update to 0.3-61. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-61.
 2022-05-30 15:34:39 +02:00
Ricardo Wurmus 7815efe731
gnu: r-cobs: Update to 1.3-5. 
* gnu/packages/cran.scm (r-cobs): Update to 1.3-5.
 2022-05-30 15:34:34 +02:00
Ricardo Wurmus 56373df33a
gnu: r-gee: Update to 4.13-23. 
* gnu/packages/cran.scm (r-gee): Update to 4.13-23.
 2022-05-30 15:34:28 +02:00
Ricardo Wurmus d3cb071050
gnu: r-qpdf: Update to 1.2.0. 
* gnu/packages/cran.scm (r-qpdf): Update to 1.2.0.
[source]: Remove trailing #T from snippet.
[arguments]: Remove trailing #T from 'configure phase.
[inputs]: Add libjpeg-turbo.
 2022-05-30 15:30:47 +02:00
Ricardo Wurmus bfcae1efbb
gnu: r-batchelor: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
 2022-05-30 15:16:35 +02:00
Efraim Flashner d2a9142852
gnu: gcc-9: Update to 9.5.0. 
* gnu/packages/gcc.scm (gcc-9): Update to 9.5.0.
 2022-05-30 15:28:04 +03:00
Efraim Flashner dc26d0f94e
gnu: hello: Update to 2.12.1. 
* gnu/packages/base.scm (hello): Update to 2.12.1.
 2022-05-30 15:28:04 +03:00
Efraim Flashner a037815f62
gnu: nss: Skip tests on riscv64-linux. 
* gnu/packages/nss.scm (nss)[arguments]: Skip tests when building for
riscv64-linux.
 2022-05-30 15:26:17 +03:00
Efraim Flashner 19e1045352
gnu: nss: Adjust make-flags for riscv64-linux. 
* gnu/packages/nss.scm (nss)[arguments]: When building for riscv64-linux
don't build the binaries with gtest.
 2022-05-30 15:18:17 +03:00
Evgenii Lepikhin 69b27be15d
gnu: Add rust-serde-regex-1. 
* gnu/packages/crates-io.scm (rust-serde-regex-1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:53 +03:00
Evgenii Lepikhin 6ec464ced7
gnu: rust-nom-7: Update to 7.1.1. 
* gnu/packages/crates-io.scm (rust-nom-7): Update to 7.1.1.
[arguments]: In cargo-inputs replace rust-minimal-lexical-0.1 with 0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:52 +03:00
Evgenii Lepikhin 4f5a71d5b7
gnu: Add rust-minimal-lexical-0.2. 
* gnu/packages/crates-io.scm (rust-minimal-lexical-0.2): New variable.
(rust-minimal-lexical-0.1): Inherit from rust-minimal-lexical-0.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:52 +03:00
Evgenii Lepikhin 4b18cb437a
gnu: Add rust-located-yaml-0.2. 
* gnu/packages/crates-io.scm (rust-located-yaml-0.2) New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:51 +03:00
Evgenii Lepikhin 30cf5284b2
gnu: Add rust-pretty-0.11. 
* gnu/packages/crates-io.scm (rust-pretty-0.11) New variable.
(rust-pretty-0.5): Inherit from rust-pretty-0.11.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:51 +03:00
Evgenii Lepikhin acada2580f
gnu: Add rust-nom-locate-4. 
* gnu/packages/crates-io.scm (rust-nom-locate-4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-05-30 11:13:50 +03:00
Efraim Flashner 4259a6516a
gnu: virtuoso-ose: Register patch. 
This is a follow-up to 48efbde7a9.

* gnu/local.mk (dist_patch_DATA): Register patch.
 2022-05-30 10:42:47 +03:00
Efraim Flashner 1a8519dd01
gnu: yt-dlp: Remove trailing #t. 
* gnu/packages/video.scm (yt-dlp)[source]: Remove trailing #t from
snippet.
[arguments]: Remove trailing #t from phases.
 2022-05-30 10:41:28 +03:00
Efraim Flashner d56506aad5
gnu: yt-dlp: Update to 2022.05.18. 
* gnu/packages/video.scm (yt-dlp): Update to 2022.05.18.
[inputs]: Add python-brotli and python-certifi.
 2022-05-30 10:41:28 +03:00
Efraim Flashner e5dd864e68
gnu: links: Update to 2.27. 
* gnu/packages/web-browsers.scm (links): Update to 2.27.
 2022-05-30 10:41:25 +03:00
Roel Janssen 48efbde7a9
gnu: virtuoso-ose: Update to 7.2.7. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.7; Run autogen
  after applying the patch below.
* gnu/packages/patches/virtuoso-ose-remove-pre-built-jar-files.patch:
  New file.
 2022-05-30 09:03:02 +02:00
Mark H Weaver 7f63a6aefc
gnu: icecat: Update to 91.9.1-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2022-1529 and CVE-2022-1802.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
 2022-05-29 23:21:41 -04:00
Wiktor Zelazny acb08304c8
gnu: Add python-gpy. 
* gnu/packages/python-science.scm (python-gpy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:06 +02:00
Wiktor Zelazny 6400f08d07
gnu: Add python-paramz. 
* gnu/packages/python-science.scm (python-paramz): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-29 23:56:05 +02:00