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Author SHA1 Message Date
Ricardo Wurmus 841c3edf3c
gnu: r-hardyweinberg: Update to 1.6.9. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.9.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus 55a090deb4
gnu: r-mice: Update to 3.12.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.12.0.
[propagated-inputs]: Add r-cpp11 and r-rlang.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus cfd8779b22
gnu: r-recipes: Update to 0.1.15. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.15.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus 9597dc08b3
gnu: r-generics: Update to 0.1.0. 
* gnu/packages/cran.scm (r-generics): Update to 0.1.0.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus 1d8b53164e
gnu: r-lava: Update to 1.6.8.1. 
* gnu/packages/cran.scm (r-lava): Update to 1.6.8.1.
 2020-12-09 22:03:30 +01:00
Ricardo Wurmus 54dd6ce673
gnu: r-fitdistrplus: Update to 1.1-3. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-3.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 89088dc1bb
gnu: r-inline: Update to 0.3.17. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.17.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 882d699ff2
gnu: r-extremes: Update to 2.1. 
* gnu/packages/cran.scm (r-extremes): Update to 2.1.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 07cb317173
gnu: r-distillery: Update to 1.2. 
* gnu/packages/cran.scm (r-distillery): Update to 1.2.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus bd69b54a55
gnu: r-circlize: Update to 0.4.11. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.11.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus b1ad80e284
gnu: r-ps: Update to 1.5.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.5.0.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 327167bd50
gnu: r-colorspace: Update to 2.0-0. 
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-0.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 0415a46fd9
gnu: r-shinyfiles: Update to 0.9.0. 
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.0.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 2b1abb4f43
gnu: r-vegan: Update to 2.5-7. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-7.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2020-12-09 22:03:29 +01:00
Ricardo Wurmus 9bf316fcaf
gnu: r-ggpmisc: Update to 0.3.7. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.7.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus 17fa0953a8
gnu: r-ggalluvial: Update to 0.12.3. 
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.3.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus d856813829
gnu: r-v8: Update to 3.4.0. 
* gnu/packages/cran.scm (r-v8): Update to 3.4.0.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus 3e337d9bb7
gnu: r-rticles: Update to 0.17. 
* gnu/packages/cran.scm (r-rticles): Update to 0.17.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus 00a275fbf4
gnu: r-magrittr: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.1.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus 6c148eaae7
import/utils: Fix conditional. 
This is a follow-up to commit 45584061a9.

* guix/import/utils.scm (package->definition): Use EQ? instead of = to compare
truthiness; use ELSE instead of (#T).
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus 18ddbd474b
gnu: r-d3r: Update to 0.9.1. 
* gnu/packages/cran.scm (r-d3r): Update to 0.9.1.
[arguments]: Use esbuild for minification.
[native-inputs]: Add source for D3 version 6; replace uglify-js with esbuild.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus d106e3e7f6
gnu: Add r-projpred. 
* gnu/packages/cran.scm (r-projpred): New variable.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus fab49665bb
gnu: Add r-optimx. 
* gnu/packages/cran.scm (r-optimx): New variable.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus 8d15940f3c
gnu: Add r-gamm4. 
* gnu/packages/cran.scm (r-gamm4): New variable.
 2020-12-09 22:03:28 +01:00
Ricardo Wurmus f0862a3578
gnu: Add r-fds. 
* gnu/packages/cran.scm (r-fds): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus 6279d2b6dd
gnu: Add r-rainbow. 
* gnu/packages/cran.scm (r-rainbow): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus 14caba7eeb
gnu: Add r-hdrcde. 
* gnu/packages/cran.scm (r-hdrcde): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus feb7c4f6ca
gnu: Add r-ash. 
* gnu/packages/cran.scm (r-ash): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus 73545fde42
gnu: Add r-parallelly. 
* gnu/packages/cran.scm (r-parallelly): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus 9c3f5b2fa0
gnu: Add r-gitcreds. 
* gnu/packages/cran.scm (r-gitcreds): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus 71a732c35d
gnu: Add r-waldo. 
* gnu/packages/cran.scm (r-waldo): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus 24cf213edb
gnu: Add r-diffobj. 
* gnu/packages/cran.scm (r-diffobj): New variable.
 2020-12-09 22:03:27 +01:00
Ricardo Wurmus bd5f751259
gnu: Add r-brio. 
* gnu/packages/cran.scm (r-brio): New variable.
 2020-12-09 22:03:26 +01:00
Leo Famulari eaca440b65
gnu: python-llfuse: Update to 1.3.8. 
* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
 2020-12-09 15:41:25 -05:00
Eric Bavier 2a23e3f582
gnu: dealii: Update to 9.2.0. 
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
 2020-12-09 13:42:05 -06:00
Eric Brown e36291ef52
gnu: Add r-restrserve. 
* gnu/packages/cran.scm (r-restrserve): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-09 19:33:35 +00:00
Pierre Neidhardt 5f6a001933
gnu: Add kiwix-desktop. 
* gnu/packages/web.scm (kiwix-desktop): New variable.
 2020-12-09 18:25:32 +01:00
Pierre Neidhardt acbf47a067
gnu: Add kiwix-lib. 
* gnu/packages/web.scm (kiwix-lib): New variable.
 2020-12-09 18:25:32 +01:00
Pierre Neidhardt 44308c8c5f
gnu: Add libzim. 
* gnu/packages/web.scm (libzim): New variable.
 2020-12-09 18:24:46 +01:00
Pierre Neidhardt a294eecd98
gnu: Add emacs-helm-switch-to-repl. 
* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
 2020-12-09 17:27:51 +01:00
Nicolas Goaziou 5103459664
gnu: emacs-debbugs: Update to 0.27. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
 2020-12-09 14:54:27 +01:00
Ludovic Courtès 3d85c3ec65
gnu: pciutils: Fix compilation error on GNU/Hurd. 
* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
 2020-12-09 14:13:33 +01:00
Ludovic Courtès 69a0440a02
doc: Document 'advertise?' for 'guix-publish-configuration'. 
* doc/guix.texi (Base Services): Document the 'advertise?' field of
'guix-publish-configuration'.
 2020-12-09 14:13:33 +01:00
Ludovic Courtès f066e65713
services: guix-publish: Depend on 'avahi-daemon' when needed. 
* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'.  When ADVERTISE? is true, also add
'avahi-daemon'.
 2020-12-09 14:13:32 +01:00
Ludovic Courtès 59a6780f70
services: avahi: Depend on 'user-processes'. 
* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
 2020-12-09 14:13:32 +01:00
Ricardo Wurmus ebf11de4e3
gnu: r-diffbind: Update to 3.0.8. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus 4617cc7fd5
gnu: r-rhtslib: Propagate zlib. 
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
 2020-12-09 12:12:48 +01:00
Ricardo Wurmus 7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
 2020-12-09 12:12:48 +01:00
zimoun cde035e67f
gnu: r-gqtlstats: Update to 1.21.3. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
 2020-12-09 12:12:48 +01:00
zimoun 6a4818716d
gnu: r-gqtlbase: Update to 1.21.1. 
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>

* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
 2020-12-09 12:12:48 +01:00