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Author SHA1 Message Date
Maxim Cournoyer
7c9be7b7cb
gnu: services: docker: Add a debug? parameter. 
* gnu/services/docker.scm (docker-configuration): Add a debug? field.
(containerd-shepherd-service): Pass the "--log-level=debug" argument when
DEBUG? is true.
(docker-shepherd-service): Pass the "--debug" and "--log-level=debug"
arguments when DEBUG? is true.
* doc/guix.texi (Miscellaneous Services): Update doc.
 2020-06-03 11:31:07 -04:00
Ricardo Wurmus
2f49007dd0
gnu: Add python-pairtools. 
* gnu/packages/bioinformatics.scm (python-pairtools): New variable.
 2020-06-03 15:01:19 +02:00
Ricardo Wurmus
6742a84c63
gnu: Remove bedtools-2.26. 
* gnu/packages/bioinformatics.scm (bedtools-2.26): Remove variable.
 2020-06-03 14:07:58 +02:00
Ricardo Wurmus
08542026ea
gnu: python-pybedtools: Disable unreliable test. 
* gnu/packages/bioinformatics.scm (python-pybedtools)[arguments]: Disable
test_intron_exon_reads test; run tests verbosely.

test_intron_exon_reads
 2020-06-03 14:07:48 +02:00
Katherine Cox-Buday
7277baf50d
gnu: librdkafka: Update to 1.4.2. 
* gnu/packages/networking.scm (librdkafka): Update to 1.4.2.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-06-03 18:37:47 +08:00
Efraim Flashner
ecd297a18c
gnu: global: Don't build static libraries. 
* gnu/packages/code.scm (global)[arguments]: Add configure-flag to
disable static libraries.
 2020-06-03 12:46:04 +03:00
Efraim Flashner
683910e983
gnu: global: Move vim plugins to correct directory. 
* gnu/packages/code.scm (global)[arguments]: Adjust 'post-install phase
to install vim plugin files to the expected directory.
 2020-06-03 12:43:04 +03:00
Nicolas Goaziou
9ab2790e2a
gnu: emacs-auctex: Update to 12.2.3. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 12.2.3.
 2020-06-03 10:08:44 +02:00
Tobias Geerinckx-Rice
523ddf348c
gnu: fmt: Update to 6.2.1. 
* gnu/packages/pretty-print.scm (fmt): Update to 6.2.1.
 2020-06-03 06:51:45 +02:00
Tobias Geerinckx-Rice
e809c891dd
gnu: camlp5: Update to 7.12. 
* gnu/packages/ocaml.scm (camlp5): Update to 7.12.
 2020-06-03 06:46:31 +02:00
Tobias Geerinckx-Rice
0c58139c9a
gnu: re2: Update to 2020-06-01. 
* gnu/packages/regex.scm (re2): Update to 2020-06-01.
 2020-06-03 06:46:31 +02:00
Tobias Geerinckx-Rice
9375555b55
gnu: nix: Update to 2.3.5. 
* gnu/packages/package-management.scm (nix): Update to 2.3.5.
 2020-06-03 06:46:31 +02:00
Tobias Geerinckx-Rice
a0cfa1e21a
gnu: intel-vaapi-driver: Update to 2.4.1. 
* gnu/packages/video.scm (intel-vaapi-driver): Update to 2.4.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[native-inputs]: Add autoconf, automake, and libtool.
 2020-06-03 06:46:30 +02:00
Tobias Geerinckx-Rice
16cf7d471c
gnu: osinfo-db: Update to 20200529. 
* gnu/packages/virtualization.scm (osinfo-db): Update to 20200529.
 2020-06-03 03:20:27 +02:00
Tobias Geerinckx-Rice
5c8a59e6b9
gnu: osinfo-db-tools: Update to 1.8.0. 
* gnu/packages/virtualization.scm (osinfo-db-tools): Update to 1.8.0.
 2020-06-03 03:20:27 +02:00
Tobias Geerinckx-Rice
9605af1acd
gnu: qutebrowser: Update to 1.12.0. 
* gnu/packages/web-browsers.scm (qutebrowser): Update to 1.12.0.
 2020-06-03 02:21:24 +02:00
Tobias Geerinckx-Rice
f295c08346
gnu: bs1770gain: Deduplicate home page URLs. 
* gnu/packages/audio.scm (bs1770gain)[source]: Re-use the HOME-PAGE
field in the snippet.
 2020-06-03 02:21:23 +02:00
Tobias Geerinckx-Rice
d6af27375d
gnu: bs1770gain: Update to 0.7.0. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.7.0.
 2020-06-03 02:21:23 +02:00
Tobias Geerinckx-Rice
56a9ef22e3
gnu: iw: Use CC-FOR-TARGET. 
* gnu/packages/linux.scm (iw)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:23 +02:00
Tobias Geerinckx-Rice
898e8b528b
gnu: net-tools: Fix cross-compilation. 
* gnu/packages/linux.scm (net-tools)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:23 +02:00
Tobias Geerinckx-Rice
6978cb2865
gnu: lemonbar: Fix cross-compilation. 
* gnu/packages/wm.scm (lemonbar)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:23 +02:00
Tobias Geerinckx-Rice
3b394f6a3e
gnu: inxi-minimal: Update to 3.1.01-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.1.01-1.
 2020-06-03 02:21:23 +02:00
Tobias Geerinckx-Rice
0792984459
gnu: acpica: Update to 20200528. 
* gnu/packages/admin.scm (acpica): Update to 20200528.
 2020-06-03 02:21:22 +02:00
Tobias Geerinckx-Rice
ac68ab337c
gnu: blktrace: Prepare for cross-compilation. 
* gnu/packages/linux.scm (blktrace)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:22 +02:00
Tobias Geerinckx-Rice
3dec317f1d
gnu: mdadm: Actually cross-compile. 
* gnu/packages/linux.scm (mdadm)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:22 +02:00
Tobias Geerinckx-Rice
7dd57cc00e
gnu: hdparm: Fix cross-compilation. 
* gnu/packages/linux.scm (hdparm)[arguments]: Use CC-FOR-TARGET.
Don't strip the binary during the build phase.
 2020-06-03 02:21:22 +02:00
Tobias Geerinckx-Rice
e45f0c79fb
gnu: mbpfan: Fix cross-compilation. 
* gnu/packages/linux.scm (mbpfan)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:22 +02:00
Tobias Geerinckx-Rice
15c8b1723a
gnu: earlyoom: Actually cross-compile. 
* gnu/packages/linux.scm (earlyoom)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:21 +02:00
Tobias Geerinckx-Rice
1f0e1c49aa
gnu: i2c-tools: Actually cross-compile. 
* gnu/packages/linux.scm (i2c-tools)[arguments]: Use CC-FOR-TARGET.
 2020-06-03 02:21:21 +02:00
Marius Bakke
c45431a283
gnu: libabigail: Update to 1.7. 
* gnu/packages/elf.scm (libabigail): Update to 1.7.
 2020-06-02 23:41:36 +02:00
Marius Bakke
9a46e0dd84
gnu: dbus: Fix CVE-2020-12049. 
* gnu/packages/patches/dbus-CVE-2020-12049.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus/fixed): New variable.
(dbus)[replacement]: New field.
 2020-06-02 23:41:35 +02:00
Tobias Geerinckx-Rice
395659d86d
gnu: sct: Prepare for cross-compilation. 
* gnu/packages/xdisorg.scm (sct)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:57:39 +02:00
Tobias Geerinckx-Rice
d9fda98049
gnu: sct: Update to 0.5. 
* gnu/packages/xdisorg.scm (sct): Update to 0.5.
 2020-06-02 20:57:39 +02:00
Tobias Geerinckx-Rice
24f4fc8431
gnu: ubridge: Fix cross-compilation. 
* gnu/packages/networking.scm (ubridge)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:19 +02:00
Tobias Geerinckx-Rice
907b9dc8cb
gnu: memtester: Fix cross-compilation. 
* gnu/packages/hardware.scm (memtester)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:19 +02:00
Tobias Geerinckx-Rice
ae05ac8fd2
gnu: iniparser: Edit synopsis & description. 
* gnu/packages/samba.scm (iniparser)[synopsis, description]: Flesh out.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
ebde5cfdf2
gnu: iniparser: Fix cross-compilation. 
* gnu/packages/samba.scm (iniparser)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
39f8ef2d16
gnu: linenoise: Fix cross-compilation. 
* gnu/packages/shells.scm (linenoise)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
3a169fe301
gnu: clipnotify: Fix cross-compilation. 
* gnu/packages/xdisorg.scm (clipnotify)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
2b9ce1007d
gnu: nvme-cli: Fix cross-compilation. 
* gnu/packages/linux.scm (nvme-cli)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
e712b998aa
gnu: lolcat: Fix cross-compilation. 
* gnu/packages/games.scm (lolcat)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
cb056c4019
gnu: clzip: Fix cross-compilation. 
* gnu/packages/compression.scm (clzip)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:18 +02:00
Tobias Geerinckx-Rice
cb3ca32052
gnu: lunzip: Fix cross-compilation. 
* gnu/packages/compression.scm (lunzip)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:17 +02:00
Tobias Geerinckx-Rice
9b9bc1b061
gnu: pigz: Fix cross-compilation. 
* gnu/packages/compression.scm (pigz)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:17 +02:00
Tobias Geerinckx-Rice
33430a455e
gnu: os-prober: Fix cross-compilation. 
* gnu/packages/bootloaders.scm (os-prober)[arguments]: Use CC-FOR-TARGET.
 2020-06-02 20:50:17 +02:00
Marius Bakke
37465b5be0
gnu: texlive-csquotes: Update source checksum. 
This package had not been adjusted for the TeX Live 2019 upgrade.
Fixes <https://bugs.gnu.org/41660>.

* gnu/packages/tex.scm (texlive-csquotes)[simple-texlive-package]: Update
expected checksum.
 2020-06-02 20:41:11 +02:00
Marius Bakke
5359b601cd
gnu: toutenclic: Add missing input. 
* gnu/packages/education.scm (toutenclic)[native-inputs]: Add UNZIP.
 2020-06-02 20:41:11 +02:00
Efraim Flashner
3ee51d616c
gnu: libreoffice: Update to 4.4.2.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 4.4.2.2.
[arguments]: Remove unrecognized configure-flag.
 2020-06-02 21:13:25 +03:00
Mark H Weaver
833252a88b
gnu: icecat: Update to 68.9.0-guix0-preview1 [security fixes]. 
Includes fixes for CVE-2020-12399 and CVE-2020-12405.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
 2020-06-02 14:06:20 -04:00
Mark H Weaver
7bc396bf35
gnu: nss: Fix CVE-2020-12399 via graft. 
* gnu/packages/patches/nss-CVE-2020-12399.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable.
(nss)[replacement]: Add field.
 2020-06-02 14:05:46 -04:00