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Author SHA1 Message Date
Mădălin Ionel Patrașcu 7c75228c8b
gnu: Add bpp-phyl-omics. 
* gnu/packages/bioinformatics.scm (bpp-phyl-omics): New variable.
 2023-04-21 12:56:39 +02:00
Mădălin Ionel Patrașcu 722a8b2296
gnu: Add bpp-seq-omics. 
* gnu/packages/bioinformatics.scm (bpp-seq-omics): New variable.
 2023-04-21 12:56:39 +02:00
Mădălin Ionel Patrașcu 5107a8a1a3
gnu: bpp-phyl: Update to 2.4.1. 
* gnu/packages/bioinformatics.scm (bpp-phyl): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
[synopsis]: Use proper capitalization.
 2023-04-21 12:56:39 +02:00
Mădălin Ionel Patrașcu 627049872b
gnu: bpp-seq: Update to 2.4.1. 
* gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build and out-of-source.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
 2023-04-21 12:56:38 +02:00
Mădălin Ionel Patrașcu 51ef858c94
gnu: bpp-core: Update to 2.4.1. 
* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
stored sources.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
 2023-04-21 12:56:38 +02:00
Nicolas Goaziou 7cfc226d1e
gnu: luakit: Further improve style. 
This is a followup to d3bc56da04.

* gnu/packages/web-browsers.scm (luakit)[arguments]<#:phases>: Remove
unnecessary INPUTS key.
[inputs]: Sort alphabetically.
 2023-04-21 12:42:36 +02:00
Nicolas Goaziou d3bc56da04
gnu: luakit: Improve package style. 
* gnu/packages/web-browsers.scm (luakit)[arguments]<#:tests?>: Properly
disable tests instead of deleting CHECK phase.
<#:make-flags, #:phases>: Use G-expressions.  Remove trailing #T.
<#:test-targes>: Add it, for the record.
[inputs]: Remove labels.
 2023-04-21 11:18:56 +02:00
Yovan Naumovski 1027f10199
gnu: Add alienblaster. 
* gnu/packages/games.scm (alienblaster): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:55 +02:00
Antero Mejr 2662f074a0
gnu: Add clog. 
* gnu/packages/parallel.scm (clog): New variable.
* gnu/packages/patches/clog-fix-shared-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:55 +02:00
Andy Tai 9d7ba42dbf
gnu: a2ps: Update to 4.15.4 
* gnu/packages/pretty-print.scm (a2ps): Update to 4.15.4

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:55 +02:00
Eidvilas Markevičius 1322672667
gnu: kakoune: update to 2022.10.31. 
* gnu/packages/text-editors.scm (kakoune): Update to 2022.10.31.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:54 +02:00
Andy Tai 482196a855
gnu: terminator: Update to 2.1.3 
* gnu/packages/gnome.scm (terminator): Update to 2.1.3

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:54 +02:00
kiasoc5 c3f51e1599
gnu: wlr-randr: Update to 0.3.0. 
* gnu/packages/wm.scm (wlr-randr): Update to 0.3.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:54 +02:00
kiasoc5 87e37ac723
gnu: mpdevil: Update to 1.10.2. 
* gnu/packages/mpd.scm (mpdevil): Update to 1.10.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:54 +02:00
Andy Tai 74e2ac6a0e
gnu: icewm: Update to 3.3.3. 
* gnu/packages/wm.scm (icewm): Update to 3.3.3.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:53 +02:00
Brendan Tildesley 604f911d2c
gnu: python-txtorcon: Fix build. 
gnu/packages/python-crypto.scm (python-txtorcon): Fix build failure.
[propagated-inputs]: Add PYTHON-PYOPENSSL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:53 +02:00
Nicolas Goaziou db4daa4192
gnu: wireshark: Update to 4.0.5. 
* gnu/packages/networking.scm (wireshark): Update to 4.0.5.
 2023-04-21 10:50:53 +02:00
Liliana Marie Prikler b7747824d8
gnu: komikku: Update to 1.17.0. 
This fixes a version incompatibility with WebkitGTK.

* gnu/packages/gnome.scm (komikku): Update to 1.17.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:52 +02:00
Raphaël Mélotte b833e481c6
gnu: luakit: Update to 2.3.3. 
* gnu/packages/web-browsers.scm (luakit): Update to 2.3.3

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-04-21 10:50:52 +02:00
Nicolas Goaziou 823b1567cb
gnu: emacs-no-littering: Update to 1.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-no-littering): Update to 1.3.0.
[propagated-inputs]: Add EMACS-COMPAT.
 2023-04-21 10:50:52 +02:00
Nicolas Goaziou ec13119d20
gnu: emacs-embark: Update to 0.22.1. 
* gnu/packages/emacs-xyz.scm (emacs-embark): Update to 0.22.1.
 2023-04-21 10:50:52 +02:00
Nicolas Goaziou 4c6524d981
gnu: emacs-elfeed-score: Build and install info documentation. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score)[arguments]<#:phases>: Add
a phase to build info files.
[native-inputs]: Add TEXINFO.
 2023-04-21 10:50:51 +02:00
Nicolas Goaziou c0d324095e
gnu: emacs-elfeed-score: Update to 1.2.5. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.5.
 2023-04-21 10:50:51 +02:00
Nicolas Goaziou 85f56611da
gnu: emacs-doom-modeline: Update to 3.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 3.4.0.
 2023-04-21 10:50:51 +02:00
Nicolas Goaziou 4c88e73786
gnu: emacs-buttercup: Update to 1.31. 
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.31.
 2023-04-21 10:50:50 +02:00
Nicolas Goaziou 0460ff069e
gnu: emacs-emms: Update to 15. 
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 15.
 2023-04-21 10:50:50 +02:00
Leo Famulari ccfae52855
gnu: linux-libre 4.14: Update to 4.14.313. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.313.
(linux-libre-4.14-pristine-source): Update hash.
 2023-04-20 23:45:13 -04:00
Leo Famulari 4c0afe137c
gnu: linux-libre 4.19: Update to 4.19.281. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.281.
(linux-libre-4.19-pristine-source): Update hash.
 2023-04-20 23:45:12 -04:00
Leo Famulari f2863d0c99
gnu: linux-libre 5.4: Update to 5.4.241. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.241.
(linux-libre-5.4-pristine-source): Update hash.
 2023-04-20 23:45:12 -04:00
Leo Famulari 85a50e9b82
gnu: linux-libre 5.10: Update to 5.10.178. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.178.
(linux-libre-5.10-pristine-source): Update hash.
 2023-04-20 23:45:12 -04:00
Leo Famulari 48fe853abc
gnu: linux-libre 5.15: Update to 5.15.108. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.108.
(linux-libre-5.15-pristine-source): Update hash.
 2023-04-20 23:45:12 -04:00
Leo Famulari 930f3fc86e
gnu: linux-libre 6.1: Update to 6.1.25. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.25.
(linux-libre-6.1-pristine-source): Update hash.
 2023-04-20 23:45:12 -04:00
Leo Famulari bdca6a49e7
gnu: linux-libre: Update to 6.2.12. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.12.
(linux-libre-6.2-pristine-source, deblob-scripts-6.2): Update hashes.
 2023-04-20 23:45:04 -04:00
Pierre Neidhardt 904b77e181
gnu: sbcl-quri: Update to 0.7.0. 
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.7.0.
 2023-04-20 19:09:52 +02:00
Navid Afkhami 61d1569575
gnu: Add r-tidygeocoder. 
* gnu/packages/cran.scm (r-tidygeocoder): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-04-20 11:46:11 +02:00
Andy Tai fde70e3864
gnu: poke: Update to 3.1. 
* gnu/packages/engineering.scm (poke): Update to 3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-04-20 11:24:23 +03:00
Fabio Natali b82a18c8a3
gnu: borgmatic: Update to 1.7.12. 
* gnu/packages/backup.scm (borgmatic): Update to 1.7.12.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-04-18 19:50:57 -04:00
Sharlatan Hellseher ea8022264f
gnu: stellarium: Update to 23.1 [fixes CVE-2023-28371]. 
Upstream introduced new versioning model <year>.<release>

* gnu/packages/astronomy.scm (stellarium): Update to 23.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-04-18 19:50:57 -04:00
Sharlatan Hellseher cd6abb5de5
gnu: calcmysky: Update to 0.3.0. 
* gnu/packages/astronomy.scm (calcmysky): Update to 0.3.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2023-04-18 19:50:56 -04:00
Efraim Flashner bb721d8861
gnu: gnutls: Extend test timeout on powerpc-linux. 
* gnu/packages/tls.scm (gnutls)[arguments]: When building for
powerpc-linux add a phase to extend the test timeout.
 2023-04-18 20:02:24 +03:00
Efraim Flashner 4d030fbd48
gnu: ultrastar-deluxe: Build with ffmpeg-5. 
* gnu/packages/games.scm (ultrastar-deluxe)[inputs]: Replace ffmpeg with
ffmpeg-5.
 2023-04-18 20:02:24 +03:00
Maxim Cournoyer 936b7bff32
gnu: guix: Update to 1.4.0-5.286cdf0. 
* gnu/packages/package-management.scm (guix): Update to 1.4.0-5.286cdf0.
 2023-04-18 12:29:12 -04:00
Maxim Cournoyer 286cdf0bc5
tests: guix-system: Drop the i686-linux desktop image test. 
Desktop these days means having Rust support (GNOME), which i686 currently
lacks on Guix.

* tests/guix-system.sh: Do not attempt to build the desktop.tmpl image for
i686-linux.
 2023-04-18 11:43:14 -04:00
John Kehayias ff8fd73927
gnu: samba: Update to 4.18.1 [security fixes]. 
Fixes CVE-2023-0922 and CVE-2023-0614.

* gnu/packages/samba.scm (samba): Update to 4.18.1.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-04-18 11:23:47 -04:00
Maxim Cournoyer a8e17eb8e5
gnu: samba: Apply graft, and make graft private. 
* gnu/packages/samba.scm (samba) [replacement]: Add field.
(samba/security-fixes): Renamed from samba/fixed, for clarity.
* gnu/packages/samba.scm (samba/pinned): Adjust for graft variable name change.
 2023-04-18 11:23:47 -04:00
Maxim Cournoyer 813d670b15
gnu: samba: Make the python-cryptography input conditional. 
* gnu/packages/samba.scm (samba) [arguments]: Conditionally enable self tests
in configure phase.
[native-inputs]:  Conditionally add python-cryptography.
* gnu/packages/samba.scm (samba/pinned) [native-inputs]: Likewise.

Reported-by: John Kehayias <john.kehayias@protonmail.com>
 2023-04-18 11:23:47 -04:00
Maxim Cournoyer 04cccedba5
tests: Fix texlive->guix-package test. 
The home page for the package had changed.

* tests/texlive.scm ("texlive->guix-package"): Match the home-page and
synopsis inexactly to avoid future similar breakages.
 2023-04-18 11:23:47 -04:00
Maxim Cournoyer 661d79ad32
gnu: python-pillow/security-fixes: Make graft package private. 
This fixes the tests/packages.scm test suite, which would have failed its
'fold-available-packages with/without cache' test case due two python-pillow
packages having the same name/version.

* gnu/packages/python-xyz.scm (python-pillow/security-fixes): Make private.
 2023-04-18 11:23:47 -04:00
Maxim Cournoyer edffb3554f
tests: Re-add debug output to a package tests. 
* tests/packages.scm ("fold-available-packages with/without cache"):
Re-introduce debugging output.
 2023-04-18 11:23:47 -04:00
Ricardo Wurmus a9f4b6ecd0
gnu: r-dmrseq: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.1.
 2023-04-18 16:04:07 +02:00