Commit graph

55470 commits

Author SHA1 Message Date
Ricardo Wurmus 7069e6c2d6
gnu: r-bit: Update to 1.1-15.2.
* gnu/packages/statistics.scm (r-bit): Update to 1.1-15.2.
2020-02-19 20:55:35 +01:00
Ricardo Wurmus 304ea861c3
gnu: r-nlme: Update to 3.1-144.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-144.
2020-02-19 20:55:26 +01:00
Ricardo Wurmus 74fa293245
gnu: r-lattice: Update to 0.20-40.
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-40.
2020-02-19 20:55:18 +01:00
Ricardo Wurmus f45ada0fc8
gnu: r-seurat: Update to 3.1.3.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.3.
[propagated-inputs]: Remove r-sdmtools.
2020-02-19 20:55:00 +01:00
Ricardo Wurmus db092c2a90
gnu: r-qtl: Update to 1.45-11.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.45-11.
2020-02-19 20:54:45 +01:00
Ricardo Wurmus be1042b326
gnu: r-nmf: Update to 0.22.0.
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.22.0.
[propagated-inputs]: Add r-biobase and r-biocmanager.
2020-02-19 18:57:31 +01:00
Ricardo Wurmus 7c9d8a5d58
gnu: r-nmf: Move to (gnu packages bioconductor).
* gnu/packages/statistics.scm (r-nmf): Move this variable from here...
* gnu/packages/bioconductor.scm (r-nmf): ...to here.
2020-02-19 18:46:22 +01:00
Ricardo Wurmus bfb6c393b9
gnu: gwl: Build with Guile 3.
* gnu/packages/package-management.scm (gwl)[inputs]: Replace guile-2.2 with
guile-3.0.
[propagated-inputs]: Replace guix, guile-commonmark, guile-gcrypt, guile-pfds,
guile-syntax-highlight, and guile-wisp with their Guile 3.0 variants.
2020-02-19 17:30:29 +01:00
Ricardo Wurmus 5479cef8ef
gnu: Add guile-lens.
* gnu/packages/guile-xyz.scm (guile-lens): New variable.
2020-02-19 17:30:26 +01:00
Pierre Neidhardt 08c7853518
gnu: Add libgdiplus.
* gnu/packages/mono.scm (libgdiplus): New variable.
2020-02-19 17:11:10 +01:00
Valentin Ignatev ba7ead2b50
gnu: Add rust-nom-3.
* gnu/packages/crates-io.scm (rust-nom-3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-19 09:58:47 +02:00
Valentin Ignatev d20c6d3d01
gnu: Add rust-lazy-static-0.1.
* gnu/packages/crates-io.scm (rust-lazy-static-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-19 09:54:52 +02:00
Valentin Ignatev 192363333d
gnu: Add rust-lazy-static-0.2.
* gnu/packages/crates-io.scm (rust-lazy-static-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-19 09:53:24 +02:00
Valentin Ignatev f8d773f433
gnu: rust-nom-4.2: Fix dependencies
* gnu/packages/crates-io.scm (rust-nom-4.2)[arguments]: Remove
rust-lexical-core-0.4, add rust-version-check-0.1 to cargo-inputs.
Remove rust-doc-comment-0.3, rust-version-check-0.9 from
cargo-development-inputs.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-19 09:49:28 +02:00
Efraim Flashner 84eb24b68a
gnu: Add rust-jemallocator-0.1.
* gnu/packages/crates-io.scm (rust-jemallocator-0.1): New variable.
2020-02-19 09:40:07 +02:00
Efraim Flashner b08b29879d
gnu: Add rust-jemalloc-sys-0.1.
* gnu/packages/crates-io.scm (rust-jemalloc-sys-0.1): New variable.
2020-02-19 09:39:22 +02:00
Valentin Ignatev f8bf241c93
gnu: Add rust-osmesa-sys-0.1.
* gnu/packages/crates-io.scm (rust-osmesa-sys-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-19 09:26:01 +02:00
Julien Lepiller c6c447701c
gnu: services: Add openvpn options.
* gnu/services/vpn.scm (openvpn-client-configuration)
(openvpn-server-configuration): Add fast-io? and auth-user-pass options.
2020-02-19 04:08:55 +01:00
Julien Lepiller 0372dd1a1e
gnu: services: Fix openvpn boolean fields.
* gnu/services/vpn.scm (serialize-boolean): Do not print #t to the file.
2020-02-19 04:08:40 +01:00
Pierre Neidhardt 97c6670ef7
gnu: emacs-racket-mode: Update to 20200115.
* gnu/packages/emacs-xyz.scm (emacs-racket-mode): Update to 20200115.
2020-02-18 19:54:13 +01:00
Tobias Geerinckx-Rice e46aacacdf
gnu: mplayer: Fix dvdnav support.
* gnu/packages/video.scm (mplayer)[inputs]: Add libdvdread.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice 8480bdd32e
gnu: mplayer: Enable GIF support.
* gnu/packages/video.scm (mplayer)[inputs]: Add giflib.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice 858b68e491
gnu: mplayer: Don't follow home page browser redirection.
* gnu/packages/video.scm (mplayer)[home-page]: Let the browser eat
HTML.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice 59ed95d6b8
gnu: mplayer: Update to 1.4.
* gnu/packages/video.scm (mplayer): Update to 1.4.
[inputs]: Use default ffmpeg version.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice a894ca327b
gnu: cvs-fast-export: Use non-native Python 3.
* gnu/packages/version-control.scm (cvs-fast-export)[native-inputs]:
Remove python-2.
[inputs]: Add python-wrapper.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice d462bf0e49
gnu: cvs-fast-export: Update to 1.51.
* gnu/packages/version-control.scm (cvs-fast-export): Update to 1.51.
[arguments]: Remove obsolete ‘remove-optimizations’ phase.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice 8cc1fdcee7
gnu: pianobar: Update to 2019.02.14.
* gnu/packages/music.scm (pianobar): Update to 2019.02.14.
[inputs]: Use current ffmpeg.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice c298063545
gnu: Use HTTPS for www.dockapps.net home pages.
* gnu/packages/gnustep.scm (wmbattery, wmcpuload, wmclock)[home-page]:
Use HTTPS.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice a76e49addf
gnu: nfs-utils: Use HTTPS home page.
* gnu/packages/nfs.scm (nfs-utils)[home-page]: Use HTTPS.
2020-02-18 18:25:29 +01:00
Tobias Geerinckx-Rice a4e8a9e0f0
gnu: Use HTTPS for elephly.net home pages.
* gnu/packages/audio.scm (lv2-mda-epiano, lv2-mda-piano)[home-page]:
Use HTTPS.
2020-02-18 18:25:29 +01:00
Maxim Cournoyer adbdf188c2
scripts: system: Do not validate network file systems.
Fixes <https://bugs.gnu.org/39551>.

* guix/scripts/system.scm (check-file-system-availability): Ignore file
systems of the NFS type.
2020-02-18 12:20:17 -05:00
Mathieu Othacehe a0d19554cb
gnu: guile-ssh: Fix cross-compilation.
* gnu/packages/ssh.scm (guile-ssh)[native-inputs]: Add guile.
2020-02-18 17:11:43 +01:00
Mathieu Othacehe 38655d7b88
gnu: guile-ssh: Update to 0.12.0.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.12.0,
[source]: remove snippet that were integrated upstream,
[arguments]: Add a fix-guile-path phase to fix tests.
(guile3.0-ssh)[arguments]: Remove as this is fixed upstream.
2020-02-18 17:11:43 +01:00
Pierre Neidhardt 4b8450c07e
gnu: Add racket-minimal.
* gnu/packages/scheme.scm (racket-minimal): New variable.
(racket-minimal)[arguments]: Split 'pre-configure phase so that the
non-minimal part can be easily removed in racket-minimal.
2020-02-18 17:04:16 +01:00
Pierre Neidhardt fb9832436a
gnu: racket: Update to 7.6.
* gnu/packages/scheme.scm (racket): Update to 7.6.
[home-page]: Use HTTPS.
* gnu/packages/patches/racket-store-checksum-override.patch: Adjust for 7.6.
2020-02-18 17:03:09 +01:00
Timotej Lazar 45cf3c3019
gnu: julius: Update to 1.3.0.
* gnu/packages/games.scm (julius): Update to 1.3.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-02-18 16:38:05 +01:00
Tobias Geerinckx-Rice e2f28609de
gnu: mrrescue: Use HTTPS home page.
* gnu/packages/games.scm (mrrescue)[home-page]: Use HTTPS.
2020-02-18 16:18:23 +01:00
Tobias Geerinckx-Rice 3e97cf4731
gnu: pianobar: Update home page.
* gnu/packages/music.scm (pianobar)[home-page]: Update & use HTTPS.
2020-02-18 16:18:01 +01:00
Tobias Geerinckx-Rice 7858de3e95
gnu: key-mon: Use HTTPS home page.
* gnu/packages/key-mon.scm (key-mon)[home-page]: Use HTTPS.
2020-02-18 16:18:01 +01:00
Tobias Geerinckx-Rice df71892b21
gnu: libfakekey: Update to 0.3.
* gnu/packages/xdisorg.scm (libfakekey): Update to 0.3.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Bootstrap manually.
[native-inputs]: Add autoconf, automake, and libtool.
2020-02-18 16:01:37 +01:00
Tobias Geerinckx-Rice e031806277
gnu: Always use HTTPS for orthecreedence.github.io.
* gnu/packages/lisp-xyz.scm (sbcl-cl-async-future, sbcl-blackbird)[home-page]: Use HTTPS.
2020-02-18 15:49:11 +01:00
Tobias Geerinckx-Rice 10650b89f1
gnu: Add wireguard-tools.
The ‘wireguard’ repository that included both tools and kernel patch is
no longer maintained.  I will add this to its description once kernel
5.6 hits Guix.

* gnu/packages/linux.scm (wireguard-tools): New public variable.
2020-02-18 15:49:11 +01:00
Tobias Geerinckx-Rice 8c20508f48
gnu: rust-nodrop-union-0.1: Fix typo.
This follows up on commit 028b0deebb.

* gnu/packages/crates-io.scm (rust-nodrop-union-0.1)[arguments]: Quote.
2020-02-18 15:48:23 +01:00
Pierre Neidhardt 676e21e4d2
gnu: next: Update to 1.5.0.
* gnu/packages/web-browsers.scm (next): Update to 1.5.0.
[synopsis]: Remove marketing.
[description]: Remove marketing.
2020-02-18 15:38:33 +01:00
Pierre Neidhardt 08d341003e
gnu: Add gnome-arcade.
* gnu/packages/emulators.scm (gnome-arcade): New variable.
2020-02-18 15:38:33 +01:00
Mathieu Othacehe fde46843ec
Revert "gnu: guile-ssh: Fix cross-compilation."
This reverts commit 10cdf14080.

./guix/store.scm:1224:15: Throw to key `srfi-34' with args `(#<condition &store-protocol-error [message: "build of `/gnu/store/gj4pk7zn0wrvf5c9rl9x8gnd3719l98d-guile3.0-ssh-0.12.0.drv' failed" status: 100] 7fa4df090120>)'.
guix pull: error: You found a bug: the program '/gnu/store/0nbcv4jkhf73qlvc6dsy05iamj6l662c-compute-guix-derivation'
2020-02-18 14:45:59 +01:00
Mathieu Othacehe 3db8833b46
Revert "gnu: guile-ssh: Update to 0.12.0."
This reverts commit 668740cc05.

This causes the following error when running guix pull:

./guix/store.scm:1224:15: Throw to key `srfi-34' with args `(#<condition &store-protocol-error [message: "build of `/gnu/store/gj4pk7zn0wrvf5c9rl9x8gnd3719l98d-guile3.0-ssh-0.12.0.drv' failed" status: 100] 7fa4df090120>)'.
guix pull: error: You found a bug: the program '/gnu/store/0nbcv4jkhf73qlvc6dsy05iamj6l662c-compute-guix-derivation'
2020-02-18 14:43:43 +01:00
Valentin Ignatev 815d3ac4c3
gnu: rust-mio-0.6: Update to 0.6.21.
* gnu/packages/crates-io.scm (rust-mio-0.6): Update to 0.6.21.
[arguments]: Don't skip build. Skip tests. Add rust-cfg-if-0.1 to
cargo-inputs. Replce rust-winapi-0.3 with 0.2 in cargo-inputs.
Replace rust-bytes-0.4 with 0.3, rust-env-logger-0.6 with 0.4 in
cargo-development-inputs.
2020-02-18 14:11:33 +02:00
Efraim Flashner 2ebb82cae3
gnu: Add rust-bytes-0.3.
* gnu/packages/crates-io.scm (rust-bytes-0.3): New variable.
2020-02-18 14:11:33 +02:00
Valentin Ignatev 15b6bb4198
gnu: Add rust-shared-library-0.1.
* gnu/packages/crates-io.scm (rust-shared-library-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-18 14:00:54 +02:00