Commit graph

66422 commits

Author SHA1 Message Date
zimoun 6e0ab26f31
gnu: r-preprocesscore: Move to (gnu packages bioconductor).
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:12 +02:00
zimoun f4d920b9f7
gnu: r-fourcseq: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:00 +02:00
Ricardo Wurmus 62881beb4d
gnu: r-rgraphviz: Build reproducibly.
Fixes <https://bugs.gnu.org/43398>.

* gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase
"make-reproducible".
2020-09-14 21:25:17 +02:00
Ricardo Wurmus d60739dff2
gnu: r-quantreg: Update to 5.67.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 2feb943558
gnu: r-cowplot: Update to 1.1.0.
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 995641369e
gnu: r-ggdendro: Update to 0.1.22.
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 7e2aa0efba
gnu: r-stringi: Update to 1.5.3.
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 98f76dbcfb
gnu: r-mass: Update to 7.3-53.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 1c1b941902
gnu: r-diversitree: Update to 0.9-14.
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 8731d274ae
gnu: r-seurat: Update to 3.2.1.
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus e6711231ed
gnu: r-rfast: Update to 2.0.1.
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 0982ffa898
gnu: r-scatterpie: Update to 0.1.5.
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus df2210be8b
gnu: r-forecast: Update to 8.13.
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus ad10a45225
gnu: r-gamlss: Update to 5.2-0.
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus bf37420fe7
gnu: r-parameters: Update to 0.8.5.
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
2020-09-14 19:07:47 +02:00
Ricardo Wurmus 515b746945
gnu: r-systemfonts: Update to 0.3.1.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 3f67fb11cf
gnu: r-dalex: Update to 2.0.
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus ef59d57841
gnu: r-sf: Update to 0.9-6.
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus b426f79602
gnu: r-deldir: Update to 0.1-29.
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0435f7eec1
gnu: r-shinyjs: Update to 2.0.0.
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 11f448ba74
gnu: r-etm: Update to 1.1.1.
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus ffe714b5f4
gnu: r-fields: Update to 11.4.
* gnu/packages/cran.scm (r-fields): Update to 11.4.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0f93324a83
gnu: r-rnifti: Update to 1.2.2.
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 0b73771ad9
gnu: r-misc3d: Update to 0.9-0.
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 015e15c836
gnu: r-rcpphnsw: Update to 0.3.0.
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.3.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus a1e92714ce
gnu: r-ggeffects: Update to 0.16.0.
* gnu/packages/cran.scm (r-ggeffects): Update to 0.16.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 7975d2c3b8
gnu: r-performance: Update to 0.5.0.
* gnu/packages/cran.scm (r-performance): Update to 0.5.0.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 5efeef3f01
gnu: r-mosaicdata: Update to 0.20.1.
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.20.1.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 9e3712958f
gnu: r-mosaiccore: Update to 0.8.0.
* gnu/packages/cran.scm (r-mosaiccore): Update to 0.8.0.
[propagated-inputs]: Remove r-lazyeval.
2020-09-14 19:07:46 +02:00
Ricardo Wurmus 6880269b94
gnu: r-flextable: Update to 0.5.11.
* gnu/packages/cran.scm (r-flextable): Update to 0.5.11.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 07c1620f81
gnu: r-insight: Update to 0.9.5.
* gnu/packages/cran.scm (r-insight): Update to 0.9.5.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 9a22da3790
gnu: r-officer: Update to 0.3.14.
* gnu/packages/cran.scm (r-officer): Update to 0.3.14.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 16cc10eafb
gnu: r-extradistr: Update to 1.9.1.
* gnu/packages/cran.scm (r-extradistr): Update to 1.9.1.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 8d8db33f71
gnu: r-tsa: Update to 1.3.
* gnu/packages/cran.scm (r-tsa): Update to 1.3.
[propagated-inputs]: Add r-tseries.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 60e4d97295
gnu: r-xfun: Update to 0.17.
* gnu/packages/cran.scm (r-xfun): Update to 0.17.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus cb4243eaba
gnu: r-processx: Update to 3.4.4.
* gnu/packages/cran.scm (r-processx): Update to 3.4.4.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 302dacec7e
gnu: r-xts: Update to 0.12.1.
* gnu/packages/cran.scm (r-xts): Update to 0.12.1.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus dee6078a86
gnu: r-psych: Update to 2.0.8.
* gnu/packages/cran.scm (r-psych): Update to 2.0.8.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus c5199f2918
gnu: r-inline: Update to 0.3.16.
* gnu/packages/cran.scm (r-inline): Update to 0.3.16.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 5473d23f59
gnu: r-lmtest: Update to 0.9-38.
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-38.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 54c91e4a66
gnu: r-shape: Update to 1.4.5.
* gnu/packages/cran.scm (r-shape): Update to 1.4.5.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus 8c7a185779
gnu: r-jsonlite: Update to 1.7.1.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.1.
2020-09-14 19:07:45 +02:00
Ricardo Wurmus adde909369
gnu: r-callr: Update to 3.4.4.
* gnu/packages/cran.scm (r-callr): Update to 3.4.4.
2020-09-14 19:07:44 +02:00
Ricardo Wurmus c629dce1df
gnu: r-ggpmisc: Update to 0.3.6.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.6.
[propagated-inputs]: Add r-glue.
2020-09-14 19:07:44 +02:00
Ricardo Wurmus e1ce10e385
gnu: r-activedriverwgs: Update to 1.1.0.
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.0.
[propagated-inputs]: Remove r-plyr.
[native-inputs]: Add r-knitr.
2020-09-14 19:07:44 +02:00
Mathieu Othacehe 327f6aec55
gnu: emacs-esup: Fix build.
* gnu/packages/emacs-xyz.scm (emacs-esup): Update to 0.7.1-1.0de8af8.
[native-inputs]: Add "emacs-buttercup" and "emacs-undercover", remove
"emacs-el-mock".
[propagated-inputs]: Add "emacs-dash".
[arguments]: Fix testing.
2020-09-14 18:12:41 +02:00
Alexandros Theodotou 913faed8ba
gnu: Add lsp-dsp-lib.
* gnu/packages/audio.scm (lsp-dsp-lib): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-14 17:23:32 +03:00
Efraim Flashner 8422a67dc1
services: docker: Make docker command available.
* gnu/services/docker.scm (docker-service-type): Extend the
profile-service-type and add the docker-cli package.
2020-09-14 17:21:16 +03:00
Efraim Flashner ef7381f463
doc: Fix docker configuration options.
* doc/guix.texi (Docker Service): Fix typo in enable-proxy? default.
2020-09-14 17:21:12 +03:00