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Author SHA1 Message Date
zimoun
69ecae7801
gnu: r-affixcan: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.16.0.
 2022-11-24 12:31:12 +01:00
zimoun
b772bc7f75
gnu: r-adsplit: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.68.0.
 2022-11-24 12:31:12 +01:00
zimoun
daf0729533
gnu: r-adimpute: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.8.0.
 2022-11-24 12:31:12 +01:00
zimoun
a62284ad13
gnu: r-adamgui: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.14.0.
 2022-11-24 12:31:12 +01:00
zimoun
38fc0acf4d
gnu: r-adam: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-adam): Update to 1.14.0.
 2022-11-24 12:31:11 +01:00
zimoun
f24085bfb3
gnu: r-absseq: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.52.0.
 2022-11-24 12:31:11 +01:00
zimoun
349804b602
gnu: r-abarray: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.66.0.
 2022-11-24 12:31:11 +01:00
zimoun
8f67799a1b
gnu: Add r-gson. 
* gnu/packages/cran.scm (r-gson): New variable.
 2022-11-24 12:31:11 +01:00
zimoun
176fd3b052
gnu: Add r-rorcid. 
* gnu/packages/cran.scm (r-rorcid): New variable.
 2022-11-24 12:31:11 +01:00
zimoun
3d073b86d3
gnu: Add r-biocbaseutils. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): New variable.
 2022-11-24 12:31:11 +01:00
zimoun
e273f52358
gnu: r-ggprism: Update to 1.0.4. 
* gnu/packages/cran.scm (r-ggprism): Update to 1.0.4.
 2022-11-24 12:31:11 +01:00
zimoun
c70207ae3b
gnu: r-ggplot2: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.0.
[propagated-inputs]: Add r-cli, r-lifecycle, and r-vctrs.
 2022-11-24 12:31:11 +01:00
zimoun
8105b3c09f
gnu: Add r-hdo-db. 
* gnu/packages/bioconductor.scm (r-hdo-db): New variable.
 2022-11-24 12:31:11 +01:00
zimoun
f4a7ccc976
guix: Upgrade to Bioconductor 3.16. 
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to
3.16.
* guix/import/cran.scm (%bioconductor-version): Same.
 2022-11-24 12:31:11 +01:00
conses
68113dc249
gnu: Add whoogle-search. 
* gnu/packages/python-web.scm (whoogle-search): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Bruno Victal
42898ae8ca
gnu: Add mympd. 
* gnu/packages/mpd.scm (mympd): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner
963e86af87
gnu: Add hebcal. 
* gnu/packages/calendar.scm (hebcal): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner
4ca2159bab
gnu: Add go-github-com-hebcal-hebcal-go. 
* gnu/packages/golang.scm (go-github-com-hebcal-hebcal-go): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner
b0307b7c12
gnu: Add go-github-com-hebcal-gematriya. 
* gnu/packages/golang.scm (go-github-com-hebcal-gematriya): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:25 +00:00
Felix Lechner
58eef1a258
gnu: Add go-github-com-nathan-osman-go-sunrise. 
* gnu/packages/golang.scm (go-github-com-nathan-osman-go-sunrise): New
variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-24 09:44:24 +00:00
Paul A. Patience
8bde62d174
gnu: Add cl-tar. 
* gnu/packages/lisp-xyz.scm (sbcl-tar, cl-tar, ecl-tar): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:16:50 +01:00
Paul A. Patience
b0c392ffcf
gnu: Add cl-tar-file. 
* gnu/packages/lisp-xyz.scm (sbcl-tar-file, cl-tar-file, ecl-tar-file):
  New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:11:18 +01:00
Paul A. Patience
8a620036d7
gnu: Add cl-40ants-doc. 
* gnu/packages/lisp-xyz.scm (sbcl-40ants-doc, cl-40ants-doc,
  ecl-40ants-doc): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-24 10:06:21 +01:00
kiasoc5
4a97591d0a
gnu: btrfs-progs: Update to 6.0.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 6.0.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:15:58 +08:00
kiasoc5
6e142c69bd
gnu: xfsprogs: Update to 6.0.0. 
* gnu/packages/linux.scm (xfsprogs): Update to 6.0.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:13:01 +08:00
jgart
148c75e75e
gnu: clasp: Update to 3.3.9. 
* gnu/packages/maths.scm (clasp): Update to 3.3.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:08:54 +08:00
Simen Endsjø
c4bbdaf2db
gnu: font-iosevka: Update to 16.4.0. 
* gnu/packages/fonts.scm (font-iosevka): Update to 16.4.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:07:11 +08:00
Tobias Geerinckx-Rice
22d44f8776
doc: Note that ‘guix package’ accepts file names. 
* doc/guix.texi (Package Management)[Invoking guix package]:
Mention support for operating on store file names.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2022-11-20 01:00:00 +01:00
Ludovic Courtès
d33ed58169
offload: Increase default 'overload-threshold' value. 
When offloading to a single machine, the previous default value would
lead 'guix offload' to wait possibly for several minutes between
subsequent builds until normalized load would finally go below 0.6.
Increasing it mitigates that.

* guix/scripts/offload.scm (<build-machine>)[overload-threshold]: Bump
to 0.8.
* doc/guix.texi (Daemon Offload Setup): Likewise.
 2022-11-23 19:34:42 +01:00
Ludovic Courtès
02a4e54250
gnu: grep: Skip 'triple-backref' test. 
* gnu/packages/base.scm (grep)[arguments]: Add
'skip-triple-backref-test' phase for GNU/Hurd.
 2022-11-23 19:34:42 +01:00
Ludovic Courtès
2b151eb286
gnu: gettext: Skip Gnulib tests that fail on GNU/Hurd. 
* gnu/packages/gettext.scm (gettext-minimal)[arguments]: In
'patch-tests' phase, arrange to not run 'test-tls'.  Adjust
'XFAIL_TESTS' flag passed to #:make-flags.
 2022-11-23 19:34:42 +01:00
Jonathan Brielmaier
7a2082023a
NEWS: Update it. 
* NEWS: Shepherd is already at 0.9.3 now.
 2022-11-23 17:22:11 +01:00
Tobias Geerinckx-Rice
f7cb2b22a2
gnu: guile-torrent: Fix build. 
* gnu/packages/guile-xyz.scm (guile-torrent)[propagated-inputs]:
Replace (3.0) guile-gcrypt with guile2.2-gcrypt.

Reported by mirai on #guix.
 2022-11-20 01:00:00 +01:00
Pierre Neidhardt
22a788d085
gnu: sbcl-cl-prevalence: Update to 20221122. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-prevalence): Update to 20221122.
This update contains a critical bugfix, hence the conssecutive version bump.
 2022-11-23 13:59:57 +01:00
Ricardo Wurmus
4b23e2d868
gnu: python-py7zr: Update to 0.20.2. 
* gnu/packages/python-compression.scm (python-py7zr): Update to 0.20.2.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-brotli, python-brotlicffi,
python-importlib-metadata, python-inflate64, python-psutil, python-pybcj,
python-pycryptodomex, and python-pyppmd; remove python-bcj-cffi,
python-ppmd-cffi, python-pycryptodome, and python-zstandard.
 2022-11-23 13:57:48 +01:00
Ricardo Wurmus
101a4e2718
gnu: Add python-pybcj. 
* gnu/packages/python-compression.scm (python-pybcj): New variable.
 2022-11-23 13:57:48 +01:00
Ricardo Wurmus
6ea2229f89
gnu: Add python-inflate64. 
* gnu/packages/python-compression.scm (python-inflate64): New variable.
 2022-11-23 13:57:48 +01:00
Ricardo Wurmus
136760c3a9
gnu: python-multivolumefile: Update to 0.2.3. 
* gnu/packages/python-compression.scm (python-multivolumefile): Update to
0.2.3.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-pep517 and python-setuptools; add
python-hypothesis.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus
fb2d4aa088
gnu: Add python-brotlicffi. 
* gnu/packages/python-compression.scm (python-brotlicffi): New variable.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus
d2a7bd50a9
gnu: Add python-pyppmd. 
* gnu/packages/python-compression.scm (python-pyppmd): New variable.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus
0d9b69795d
gnu: python-zstandard: Update to 0.19.0. 
* gnu/packages/python-compression.scm (python-zstandard): Update to 0.19.0.
[propagated-inputs]: Add python-cffi.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus
32fa848611
gnu: python-pyzstd: Update to 0.15.3. 
* gnu/packages/python-compression.scm (python-pyzstd): Update to 0.15.3.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus
48a5dc0ffb
gnu: python-ppmd-cffi: Update to 0.5.0. 
* gnu/packages/python-compression.scm (python-ppmd-cffi): Update to 0.5.0.
[native-inputs]: Remove python-setuptools and python-pep517; add
python-hypothesis.
 2022-11-23 13:57:47 +01:00
Ricardo Wurmus
3ab9adba57
gnu: python-munkres: Conditionally disable failing test. 
* gnu/packages/python-xyz.scm (python-munkres)[arguments]: Add phase
"disable-test" to patch test suite.
 2022-11-23 13:57:47 +01:00
Mădălin Ionel Patrașcu
093bf20cdc
gnu: Add r-alpine. 
* gnu/packages/bioconductor.scm (r-alpine): New variable.
 2022-11-23 13:57:43 +01:00
Sharlatan Hellseher
7fa8c05753
gnu: python-cdflib: Update to 0.4.9. 
* gnu/packages/astronomy.scm (python-cdflib): Update to 0.4.9.
[build-system]: Use pyproject-build-system to simplify package.
[description]: Expand acronym for CDF.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00
Sharlatan Hellseher
6ffe15bda7
gnu: Add cl-cacau. 
* gnu/packages/lisp-check.scm (cl-cacau, ecl-cacau, sbcl-cacau): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00
Sharlatan Hellseher
cd9df33e41
gnu: Add cl-eventbus. 
* gnu/packages/lisp-xyz.scm (cl-eventbus, ecl-eventbus, sbcl-eventbus): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00
Sharlatan Hellseher
f39a18e7d4
gnu: Add cl-assert-p. 
* gnu/packages/lisp-check.scm (cl-assert-p, ecl-assert-p, sbcl-assert-p): New
variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00
Sharlatan Hellseher
dc95215dc0
gnu: Add cl-assertion-error. 
* gnu/packages/lisp-check.scm (cl-assertion-error, ecl-assertion-error,
sbcl-assertion-error): New variables.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-11-23 09:53:11 +00:00