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82069 commits

Author SHA1 Message Date
Ricardo Wurmus 68b22a8541
gnu: r-delayedmatrixstats: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus 26d6db11f0
gnu: r-sparsematrixstats: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus b2316605e2
gnu: r-scuttle: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus 2897ad3178
gnu: r-beachmat: Update to 2.8.1.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus da7e7c9de8
gnu: r-biocset: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus 9ff9a4756d
gnu: r-universalmotif: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus 0022f40462
gnu: r-clusterprofiler: Update to 4.0.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus 5543456ae9
gnu: r-dose: Update to 3.18.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus 1c23b99a3c
gnu: r-batchelor: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 82d6774757
gnu: r-ggtree: Update to 3.0.3.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus e4ad91eb3e
gnu: r-treeio: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 917f0def66
gnu: r-matrixgenerics: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 3ef4c12a49
gnu: r-chippeakanno: Update to 3.26.3.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 33fedd371a
gnu: r-diffbind: Update to 3.2.5.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 514454cc8f
gnu: r-structuralvariantannotation: Update to 1.8.2.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2.
[propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and
r-summarizedexperiment.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 1920e567a7
gnu: r-rtracklayer: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 495c50c68d
gnu: r-limma: Update to 3.48.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 3277c4e749
gnu: r-genomicfeatures: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 8df84bedf7
gnu: r-ensembldb: Update to 2.16.4.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus e46cf457bb
gnu: r-biostrings: Update to 2.60.2.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 227579e84a
gnu: r-biomart: Update to 2.48.3.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 2a775745d7
gnu: r-xml: Update to 3.99-0.7.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.7.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 871c81d0e6
gnu: r-rsqlite: Update to 2.2.8.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.8.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus e626540d41
gnu: r-rmarkdown: Update to 2.10.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.10.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus 5b7813fd09
gnu: r-readr: Update to 2.0.1.
* gnu/packages/statistics.scm (r-readr): Update to 2.0.1.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus ccdcb67353
gnu: r-r6: Update to 2.5.1.
* gnu/packages/statistics.scm (r-r6): Update to 2.5.1.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 54b95b640d
gnu: r-survival: Update to 3.2-12.
* gnu/packages/statistics.scm (r-survival): Update to 3.2-12.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 4f5328854f
gnu: r-keras: Update to 2.6.0.
* gnu/packages/cran.scm (r-keras): Update to 2.6.0.
[propagated-inputs]: Add r-ellipsis and r-glue.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 33317ba722
gnu: r-tensorflow: Update to 2.6.0.
* gnu/packages/cran.scm (r-tensorflow): Update to 2.6.0.
[propagated-inputs]: Remove r-jsonlite; add r-tfautograph.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus ed7d8e74e4
gnu: r-opencpu: Update to 2.2.5.
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.5.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 224cb006f6
gnu: r-vroom: Update to 1.5.4.
* gnu/packages/cran.scm (r-vroom): Update to 1.5.4.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 18a887b767
gnu: r-textplot: Update to 0.2.0.
* gnu/packages/cran.scm (r-textplot): Update to 0.2.0.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 36a506586b
gnu: r-rjsonio: Update to 1.3-1.5.
* gnu/packages/cran.scm (r-rjsonio): Update to 1.3-1.5.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 5f95575b84
gnu: r-english: Update to 1.2-6.
* gnu/packages/cran.scm (r-english): Update to 1.2-6.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 1df8915a03
gnu: r-mlr3learners: Update to 0.5.0.
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.0.
[propagated-inputs]: Add r-checkmate.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus f6e76ab262
gnu: r-mlr3: Update to 0.12.0.
* gnu/packages/cran.scm (r-mlr3): Update to 0.12.0.
[propagated-inputs]: Remove r-digest; add r-future.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 7dae9355fd
gnu: r-seurat: Update to 4.0.4.
* gnu/packages/cran.scm (r-seurat): Update to 4.0.4.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 0887bff472
gnu: r-infer: Update to 1.0.0.
* gnu/packages/cran.scm (r-infer): Update to 1.0.0.
[propagated-inputs]: Add r-broom, r-generics, r-patchwork, and r-tidyr.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 59bc5db72e
gnu: r-scatterpie: Update to 0.1.7.
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.7.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus d8cd4468e4
gnu: r-brms: Update to 2.16.0.
* gnu/packages/cran.scm (r-brms): Update to 2.16.0.
[propagated-inputs]: Add r-posterior.
2021-08-24 12:28:11 +02:00
Ricardo Wurmus 8a2f102fb4
gnu: r-rxnat: Update to 1.0.15.
* gnu/packages/cran.scm (r-rxnat): Update to 1.0.15.
[propagated-inputs]: Remove r-dplyr.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 9480d44b40
gnu: r-rlinsolve: Update to 0.3.2.
* gnu/packages/cran.scm (r-rlinsolve): Update to 0.3.2.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 01bcea4dcb
gnu: r-rsconnect: Update to 0.8.24.
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.24.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 50e345f1b1
gnu: r-packrat: Update to 0.7.0.
* gnu/packages/cran.scm (r-packrat): Update to 0.7.0.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 8804fe4f65
gnu: r-rpf: Update to 1.0.8.
* gnu/packages/cran.scm (r-rpf): Update to 1.0.8.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 33df0e388e
gnu: r-quanteda: Update to 3.1.0.
* gnu/packages/cran.scm (r-quanteda): Update to 3.1.0.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus b4b3ffb09e
gnu: r-tree: Update to 1.0-41.
* gnu/packages/cran.scm (r-tree): Update to 1.0-41.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 0ed48e1314
gnu: r-showtext: Update to 0.9-4.
* gnu/packages/cran.scm (r-showtext): Update to 0.9-4.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus a6ffecaf7b
gnu: r-sysfonts: Update to 0.8.5.
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.5.
2021-08-24 12:28:10 +02:00
Ricardo Wurmus 6b4e6deea6
gnu: r-terra: Update to 1.3-22.
* gnu/packages/cran.scm (r-terra): Update to 1.3-22.
2021-08-24 12:28:10 +02:00