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Author SHA1 Message Date
Tobias Geerinckx-Rice 6106044849
gnu: linux-libre: Bump max-silent-time even further. 
Aarch64 CI build still fail with ‘timed out after 3600 seconds of
silence’.

* gnu/packages/linux.scm (make-linux-libre*):
Increase the max-silent-time to 3 hours.

Reported by akirakyle in #guix.
 2023-01-08 01:00:02 +01:00
Tobias Geerinckx-Rice 03829e066d
gnu: emacs-hsluv: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-hsluv)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice 080c651a63
gnu: emacs-hide-lines: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-hide-lines)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice ec89b1ae16
gnu: emacs-syslog-mode: Name git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-syslog-mode)[source]: Specify a FILE-NAME.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice e4673b45d3
doc: Fix <openntpd-configuration> openntpd default. 
* doc/guix.texi (Networking Services): <openntpd-configuration>'s
openntpd field takes a package: it does not default to a FILE-APPEND
call.
 2023-01-08 01:00:01 +01:00
Tobias Geerinckx-Rice ce1db7a544
gnu: fbcat: Fix typo in description. 
* gnu/packages/linux.scm (fbcat)[description]: Fix ‘therof’.  Add newline.
 2023-01-08 01:00:00 +01:00
Marius Bakke 79a9bb25bc
gnu: perftest: Update to 4.5-0.20. 
* gnu/packages/linux.scm (perftest): Update to 4.5-0.20.
[source]: Switch to GIT-FETCH.
[arguments]: Remove.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and LIBTOOL.
[inputs]: Add PCIUTILS.
 2023-01-10 00:14:43 +01:00
Marius Bakke 73d5abd003
gnu: lib3mf: Update to 2.2.0. 
* gnu/packages/engineering.scm (lib3mf): Update to 2.2.0.
 2023-01-10 00:14:43 +01:00
Marius Bakke f29a17c84b
gnu: lib3mf: Remove bundled software. 
* gnu/packages/engineering.scm (lib3mf)[source](snippet): Delete bundled
copies of libzip and zlib.  Adjust header inclusions.
 2023-01-10 00:14:43 +01:00
Marius Bakke 5e36d4381f
gnu: lib3mf: Remove input labels. 
* gnu/packages/engineering.scm (lib3mf)[inputs]: Remove labels.
 2023-01-10 00:14:43 +01:00
Marius Bakke 5e101ab56f
gnu: lib3mf: Remove bundled ACT. 
* gnu/packages/engineering.scm (lib3mf)[source](modules, snippet): New fields.
[arguments]: Add phase to provide act binary.
[native-inputs]: Add AUTOMATIC-COMPONENT-TOOLKIT.
 2023-01-10 00:14:43 +01:00
Marius Bakke df33c8de73
gnu: Add automatic-component-toolkit. 
* gnu/packages/code.scm (automatic-component-toolkit): New variable.
 2023-01-10 00:14:42 +01:00
Ricardo Wurmus 8423ca9da8
gnu: r-biocset: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.1.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus 8ee7f8df76
gnu: r-biocviews: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.2.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus d41e85678a
gnu: r-variancepartition: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.1.
[propagated-inputs]: Add r-remacor.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus 850638df5a
gnu: r-flowworkspace: Update to 4.10.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.10.1.
[propagated-inputs]: Remove r-aws-s3, r-aws-signature, r-digest, r-lattice,
r-latticeextra, r-rcpp, r-rcpparmadillo, and r-rcppparallel; add
r-cpp11.
 2023-01-09 23:08:36 +01:00
Ricardo Wurmus 3ac0f4e62c
gnu: r-batchelor: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.14.1.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus aca59da931
gnu: r-msnbase: Update to 2.24.2. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.2.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus f5629558b1
gnu: r-genomeinfodb: Update to 1.34.6. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.6.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus b37a9bfba6
gnu: r-bsgenome: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.2.
 2023-01-09 23:08:35 +01:00
Ricardo Wurmus 3072990b03
gnu: r-biocparallel: Update to 1.32.5. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.5.
 2023-01-09 23:07:58 +01:00
Ricardo Wurmus 349d110ae0
gnu: Add r-remacor. 
* gnu/packages/cran.scm (r-remacor): New variable.
 2023-01-09 23:06:16 +01:00
Ricardo Wurmus 8e864f2a3b
gnu: Add r-clustergeneration. 
* gnu/packages/cran.scm (r-clustergeneration): New variable.
 2023-01-09 23:06:05 +01:00
Ricardo Wurmus 51e79fe737
gnu: Update copyright header. 
* gnu/packages/cran.scm: Update copyright header.
 2023-01-09 22:34:58 +01:00
Ricardo Wurmus 6e75790fc0
import/cran: Fix Bioconductor updater. 
* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION
instead of VERSION, which is always #F.
 2023-01-09 22:32:58 +01:00
Ricardo Wurmus 387c486591
gnu: r-fpc: Update to 2.2-10. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-10.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus bd0da7c791
gnu: r-statmod: Update to 1.5.0. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.5.0.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 1e3990d313
gnu: r-sendmailr: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.3-2.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 8c33135953
gnu: r-bien: Update to 1.2.6. 
* gnu/packages/cran.scm (r-bien): Update to 1.2.6.
[propagated-inputs]: Remove r-rgdal, r-rgeos, and r-sp; add r-terra.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 5aacc2bd98
gnu: r-rtweet: Update to 1.1.0. 
* gnu/packages/cran.scm (r-rtweet): Update to 1.1.0.
[propagated-inputs]: Add r-httr2.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus fa0dc85d40
gnu: r-mlr3learners: Update to 0.5.6. 
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.6.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 302f55fd9d
gnu: r-qtl: Update to 1.58. 
* gnu/packages/cran.scm (r-qtl): Update to 1.58.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 848c318aa0
gnu: r-tidytext: Update to 0.4.1. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.1.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 63921834e9
gnu: r-forecast: Update to 8.20. 
* gnu/packages/cran.scm (r-forecast): Update to 8.20.
 2023-01-09 22:30:51 +01:00
Ricardo Wurmus 20e6139df3
gnu: r-qqconf: Update to 1.3.1. 
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.1.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus dcf8c29277
gnu: r-gkmsvm: Update to 0.82.0. 
* gnu/packages/cran.scm (r-gkmsvm): Update to 0.82.0.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus a2c77eec88
gnu: r-lavaan: Update to 0.6-13. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-13.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus 8b7de31e7a
gnu: r-rncl: Update to 0.8.7. 
* gnu/packages/cran.scm (r-rncl): Update to 0.8.7.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus b24219443d
gnu: r-fmsb: Update to 0.7.5. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.5.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus 4e69d047c8
gnu: r-rgl: Update to 0.111.6. 
* gnu/packages/cran.scm (r-rgl): Update to 0.111.6.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus 4f9b35d55c
gnu: r-ncdf4: Update to 1.21. 
* gnu/packages/cran.scm (r-ncdf4): Update to 1.21.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus 1ce7003fb1
gnu: r-afex: Update to 1.2-1. 
* gnu/packages/cran.scm (r-afex): Update to 1.2-1.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus c63bbd4348
gnu: r-raster: Update to 3.6-13. 
* gnu/packages/cran.scm (r-raster): Update to 3.6-13.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus fd82a783eb
gnu: r-drtmle: Update to 1.1.2. 
* gnu/packages/cran.scm (r-drtmle): Update to 1.1.2.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus 8b322c5967
gnu: r-netrep: Update to 1.2.6. 
* gnu/packages/cran.scm (r-netrep): Update to 1.2.6.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus 8d696f2728
gnu: r-precrec: Update to 0.14.1. 
* gnu/packages/cran.scm (r-precrec): Update to 0.14.1.
[propagated-inputs]: Add r-rlang.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus fa9f02dc9f
gnu: r-writexl: Update to 1.4.2. 
* gnu/packages/cran.scm (r-writexl): Update to 1.4.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus c7d61d2077
gnu: r-officer: Update to 0.5.1. 
* gnu/packages/cran.scm (r-officer): Update to 0.5.1.
[propagated-inputs]: Add r-openssl.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus 18ea1e2085
gnu: r-billboarder: Update to 0.4.0. 
* gnu/packages/cran.scm (r-billboarder): Update to 0.4.0.
[native-inputs]: Update js-billboard to 3.6.3.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus 3090a07f90
gnu: r-reticulate: Update to 1.27. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.27.
 2023-01-09 22:30:49 +01:00