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Author SHA1 Message Date
Tobias Geerinckx-Rice 5decb16015
gnu: gmime: Update to 3.2.6. 
* gnu/packages/mail.scm (gmime): Update to 3.2.6.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 363fe78af1
gnu: liblo: Update to 0.31. 
* gnu/packages/audio.scm (liblo): Update to 0.31.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 46b39ce835
gnu: fish: Don't use NAME in source URI. 
* gnu/packages/shells.scm (fish)[source]: Hard-code NAME.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 848be51c88
gnu: gptfdisk: Update to 1.0.5. 
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.5.
[source]: Hard-code NAME.
[arguments]: Add ‘fix-include-directory’ phase.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 0e08ca1454
gnu: amtk: Update to 5.0.2. 
* gnu/packages/gnome.scm (amtk): Update to 5.0.2.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice e82cf6c687
gnu: notmuch: Extend test time-out. 
* gnu/packages/mail.scm (notmuch)[arguments]:
Add NOTMUCH_TEST_TIMEOUT=1h make flag.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 5815531202
gnu: oil-shell: Update to 0.7.0. 
* gnu/packages/shells.scm (oil-shell): Update to 0.7.0.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice efebdf3a66
gnu: serd: Update to 0.30.2. 
* gnu/packages/rdf.scm (serd): Update to 0.30.2.
 2020-03-03 05:06:47 +01:00
Tobias Geerinckx-Rice 78fca23163
gnu: python-pyudev: Update to 0.22.0. 
* gnu/packages/admin.scm (python-pyudev): Update to 0.22.0.
 2020-03-03 05:05:47 +01:00
Leo Famulari 6ce0865500
gnu: Go: Update to 1.13.8. 
* gnu/packages/golang.scm (go-1.13): Update to 1.13.8.
 2020-03-02 19:30:26 -05:00
Marius Bakke 15a6805751
gnu: Add system test for CUPS. 
* gnu/tests/cups.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2020-03-02 23:39:44 +01:00
Marius Bakke 1f8838d1f6
gnu: libgc: Fix replacement inheritance. 
* gnu/packages/bdw-gc.scm (libgc-8.0): Do not use PACKAGE/INHERIT, because it
does not make sense to inherit any replacements of LIBGC.
(libgc/back-pointers): Use PACKAGE/INHERIT.
 2020-03-02 23:39:44 +01:00
Ricardo Wurmus 1e07875b57
gnu: Add r-zseq. 
* gnu/packages/cran.scm (r-zseq): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus 02366a12d0
gnu: Add r-ztype. 
* gnu/packages/cran.scm (r-ztype): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus 11ab52888d
gnu: Add r-zvcv. 
* gnu/packages/cran.scm (r-zvcv): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus 505d6716d0
gnu: Add r-zyp. 
* gnu/packages/cran.scm (r-zyp): New variable.
 2020-03-02 23:05:49 +01:00
Ricardo Wurmus 7316f137dc
gnu: Add r-kendall. 
* gnu/packages/cran.scm (r-kendall): New variable.
 2020-03-02 23:05:49 +01:00
Maxim Cournoyer 1639e0b7b6
gnu: python-smmap: Update to version 3.0.1, deprecate python-smmap2. 
* gnu/packages/python-xyz.scm (python-smmap): Rename from python-smmap2, and
update to version 3.0.1.
(python-smmap2, python2-smmap2): Preserve original bindings, marked as
deprecated.
* gnu/packages/version-control.scm (python-gitdb)[propagated-inputs]: Depend
on the new python-smmap package.
 2020-03-02 17:03:03 -05:00
Maxim Cournoyer 166dbbb012
gnu: python-gitpython: Update to 3.1.0. 
* gnu/packages/version-control.scm (python-gitpython): Update to 3.1.0.
 2020-03-02 17:03:03 -05:00
Maxim Cournoyer cbe4272e6f
gnu: python-gitdb: Update to 4.0.2. 
* gnu/packages/version-control.scm (python-gitdb): Update to 4.0.2.
[source]: Correct the PyPI URL to refer to the actual gitdb package, not a
mirror.  This mirror had a problematic setup.py install requirement that
required gitdb>=4.0.1, which would cause run time errors when using snakemake.
 2020-03-02 17:03:03 -05:00
Maxim Cournoyer 357af7f283
gnu: python-pyyaml: Update to 5.3. 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.3.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer 8c06d6d8ce
gnu: python-xenon: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-xenon): Update to 0.7.0.
[arguments]: Set #:tests? to #f to disable test suite.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer f675ab4faf
gnu: python-radon: Update to 4.1.0. 
* gnu/packages/python-xyz.scm (python-radon): Update to 4.1.0.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer bd13705540
gnu: python-colorama: Update to 0.4.3. 
* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.3.
 2020-03-02 17:03:02 -05:00
Maxim Cournoyer 9c9704a9d7
gnu: Add python-wget. 
* gnu/packages/python-xyz.scm (python-wget): New variable.
 2020-03-02 17:03:02 -05:00
Nicolas Goaziou 1eee899617
gnu: emacs-windower: Fix description. 
* gnu/packages/emacs-xyz.scm (emacs-windower): Fix Texinfo code for lists in
description.
 2020-03-02 22:59:57 +01:00
Ricardo Wurmus 7a4b2da48f
gnu: r-forcats: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.0.
 2020-03-02 21:53:49 +01:00
Ricardo Wurmus 3f809fe875
gnu: r-testthat: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.2.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus d82a17ebaa
gnu: r-openmx: Update to 2.17.3. 
* gnu/packages/cran.scm (r-openmx): Update to 2.17.3.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus 2d063d4535
gnu: r-summarytools: Update to 0.9.6. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.6.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus bbba65e269
gnu: r-officer: Update to 0.3.7. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.7.
[propagated-inputs]: Remove r-base64enc, r-htmltools, r-rcpp, and r-rlang.
 2020-03-02 21:53:48 +01:00
Ricardo Wurmus 1284df4ef6
gnu: r-seqminer: Update to 8.0. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 8.0.
 2020-03-02 21:53:48 +01:00
Tobias Geerinckx-Rice b4034d1bc4
gnu: ecl-clunit: Use HTTPS home page. 
* gnu/packages/lisp-xyz.scm (ecl-clunit)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 711ebe771e
gnu: mapnik: Use HTTPS home page. 
* gnu/packages/geo.scm (mapnik)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 4e5ad79e4d
gnu: python-rq: Use HTTPS home page. 
* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 35e74723b5
gnu: java-plexus-interpolation: Use HTTPS home page. 
* gnu/packages/java.scm (java-plexus-interpolation)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice c99f0e5780
gnu: amsynth: Use HTTPS home page. 
* gnu/packages/music.scm (amsynth)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice a369682826
gnu: pootle: Use HTTPS home page. 
* gnu/packages/django.scm (pootle)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 9bbb492042
gnu: muse-sequencer: Update home page. 
* gnu/packages/music.scm (muse-sequencer)[home-page]: Follow (HTTPS)
redirection.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice ba6b48b84f
gnu: opensmtpd: Support ECDSA certificates. 
The required libressl version is now stable and more featureful than
openssl.

* gnu/packages/mail.scm (opensmtpd)[inputs]: Replace openssl with libressl.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice 0250672b97
gnu: libressl: Update to 3.0.2. 
* gnu/packages/tls.scm (libressl): Update to 3.0.2.
 2020-03-02 21:46:27 +01:00
Tobias Geerinckx-Rice b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
 2020-03-02 21:46:27 +01:00
Nicolas Goaziou 45a2636a0b
gnu: emacs-modus-themes: Update to 0.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.6.0.
 2020-03-02 21:37:15 +01:00
Leo Famulari 8e1f5aaba2
gnu: Syncthing: Fix installation of the 'util' package output. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the 'install' phase.
 2020-03-02 15:36:21 -05:00
Efraim Flashner 7b1ba1e4fc
gnu: librsvg-next: Fix cargo dependency. 
* gnu/packages/gnome.scm (librsvg-next-source): Don't hardcode patch
version of cargo inputs.
 2020-03-02 22:11:16 +02:00
Efraim Flashner 597f41ca49
gnu: rust-diff-0.1: Update to 0.1.12. 
* gnu/packages/crates-io.scm (rust-diff-0.1): Update to 0.1.12.
[arguments]: Replace rust-quickcheck-0.8 with 0.9 in
cargo-development-inputs.
 2020-03-02 22:09:04 +02:00
Efraim Flashner 4b309aad04
gnu: rust-defmac-0.2: Don't skip build. 
* gnu/packages/crates-io.scm (rust-defmac-0.2)[arguments]: Don't skip
build.
 2020-03-02 21:58:22 +02:00
Efraim Flashner 64a28fd6e1
gnu: rust-datetime-0.4: Don't skip build. 
* gnu/packages/crates-io.scm (rust-datetime-0.4)[arguments]: Don't skip
build. Add rust-regex-0.1 to cargo-development-inputs.
 2020-03-02 21:56:54 +02:00
Efraim Flashner 49877d9fd6
gnu: rust-constant-time-eq-0.1: Don't skip build. 
* gnu/packages/crates-io.scm (rust-constant-time-eq-0.1)[arguments]:
Don't skip build.
 2020-03-02 21:48:02 +02:00
Vincent Legoll bdcec7028c
gnu: debootstrap: Update to 1.0.119. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.119.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-03-02 21:33:28 +02:00