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Author SHA1 Message Date
Ludovic Courtès 57db09aae7
environment: Add '--nesting'. 
* guix/scripts/environment.scm (show-environment-options-help)
(%options): Add '--nesting'.
(options/resolve-packages): Handle it.
(launch-environment/container): Add #:nesting? and honor it.
[nesting-mappings]: New procedure.
(guix-environment*): Add support for '--nesting'.
* guix/scripts/shell.scm (profile-cached-gc-root): Special-case
'nesting?'.
* tests/guix-environment-container.sh: Test it.
* doc/guix.texi (Invoking guix shell): Document it.
 2023-04-06 18:34:15 +02:00
Theofilos Pechlivanis 58769f9273
gnu: rizin: Update to 0.5.2. 
* gnu/packages/engineering.scm (rizin): Update to 0.5.2.
[arguments]: Remove libuv. Add lzma, libmspack and swift_demangler. Skip the analysis_var test.
[inputs]: Add libmspack.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:15 +02:00
Yovan Naumovski 730655d56a
gnu: janet: Update to 1.27.0. 
* gnu/packages/lisp.scm (janet): Update to 1.27.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:15 +02:00
Bruno Victal 11e671c816
gnu: libexif: Update to 0.6.24. [fixes CVE-2020-0198, CVE-2020-0452] 
* gnu/packages/photo.scm (libexif): Update to 0.6.24.
[source]: Switch to git checkout.
[native-inputs]: Add autoconf, automake, gettext-minimal and libtool.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Z572 452b2ec593
gnu: tcsh: Fix riscv64 cross-compilation. 
* gnu/packages/shells.scm (tcsh): fix riscv64 cross-build.
[arguments]<#:phase>: Add 'update-config-scripts' phase for riscv64.
[native-inputs]: Add CONFIG for riscv64.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Sergey Trofimov b5a35caeeb
gnu: Add avfs. 
* gnu/packages/file-systems.scm (avfs): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Arjan Adriaanse cfbd3a3965
gnu: pounce: Update to 3.1. 
* gnu/packages/messaging.scm (pounce): Update to 3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-04-06 18:34:14 +02:00
Ricardo Wurmus 155db42699
gnu: r-ranger: Update to 0.15.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.15.1.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus f707d99bf5
gnu: r-sn: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-sn): Update to 2.1.1.
[native-inputs]: Add r-r-rsp.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 946f530dc0
gnu: r-rsqlite: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.1.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus bc9595cc36
gnu: r-rcpparmadillo: Update to 0.12.2.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.2.0.0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 241edf1daa
gnu: r-ggplot2: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.2.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 52d960874a
gnu: r-matrix: Update to 1.5-4. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus a2f4b3368d
gnu: r-lattice: Update to 0.21-8. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-8.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus d9285dc460
gnu: r-gstat: Update to 2.1-1. 
* gnu/packages/cran.scm (r-gstat): Update to 2.1-1.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus d98d68c60e
gnu: r-spacetime: Update to 1.3-0. 
* gnu/packages/cran.scm (r-spacetime): Update to 1.3-0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus e8b964b8dc
gnu: r-ggh4x: Update to 0.2.4. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.4.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 2dc53b757e
gnu: r-readtext: Update to 0.82. 
* gnu/packages/cran.scm (r-readtext): Update to 0.82.
[propagated-inputs]: Remove r-tibble; add r-pillar.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 9801058875
gnu: r-densestbayes: Update to 1.0-2.2. 
* gnu/packages/cran.scm (r-densestbayes): Update to 1.0-2.2.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 6ce72e8a85
gnu: r-tune: Update to 1.1.0. 
* gnu/packages/cran.scm (r-tune): Update to 1.1.0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 22f9445b3e
gnu: r-dials: Update to 1.2.0. 
* gnu/packages/cran.scm (r-dials): Update to 1.2.0.
 2023-04-06 17:33:15 +02:00
Ricardo Wurmus 8f3c0aed69
gnu: r-projpred: Update to 2.5.0. 
* gnu/packages/cran.scm (r-projpred): Update to 2.5.0.
[propagated-inputs]: Remove r-dplyr, r-magrittr, and r-rlang.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus e7c284458e
gnu: r-loo: Update to 2.6.0. 
* gnu/packages/cran.scm (r-loo): Update to 2.6.0.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 2e5d3192a0
gnu: r-openmx: Update to 2.21.8. 
* gnu/packages/cran.scm (r-openmx): Update to 2.21.8.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 97948967d1
gnu: r-topicmodels: Update to 0.2-14. 
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-14.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 12ac342f7d
gnu: r-emplik: Update to 1.3. 
* gnu/packages/cran.scm (r-emplik): Update to 1.3.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 2c4d5a1f15
gnu: r-rglpk: Update to 0.6-5. 
* gnu/packages/cran.scm (r-rglpk): Update to 0.6-5.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 73e2504652
gnu: r-parameters: Update to 0.20.3. 
* gnu/packages/cran.scm (r-parameters): Update to 0.20.3.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus d8a2e51df7
gnu: r-xgboost: Update to 1.7.5.1. 
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.5.1.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 41bbe582d0
gnu: r-seqinr: Update to 4.2-30. 
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-30.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 9263c6301b
gnu: r-sjplot: Update to 2.8.14. 
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.14.
[propagated-inputs]: Remove r-effectsize.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus 06151f4908
gnu: r-ggeffects: Update to 1.2.1. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.1.
 2023-04-06 17:33:14 +02:00
Ricardo Wurmus c840a7621a
gnu: r-glmmtmb: Update to 1.1.7. 
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.7.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus 7f6e70bb95
gnu: r-interp: Update to 1.1-4. 
* gnu/packages/cran.scm (r-interp): Update to 1.1-4.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus 88d8ab1809
gnu: r-flextable: Update to 0.9.1. 
* gnu/packages/cran.scm (r-flextable): Update to 0.9.1.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus b93f3904f6
gnu: r-ellipse: Update to 0.4.5. 
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.5.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus e521bcbd8b
gnu: r-quantmod: Update to 0.4.21. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.21.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus b218a9c49c
gnu: r-tsp: Update to 1.2-4. 
* gnu/packages/cran.scm (r-tsp): Update to 1.2-4.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus 6d980ffa69
gnu: r-prodlim: Update to 2023.03.31. 
* gnu/packages/cran.scm (r-prodlim): Update to 2023.03.31.
[propagated-inputs]: Add r-data-table and r-diagram.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus a2bf89f814
gnu: r-ps: Update to 1.7.4. 
* gnu/packages/cran.scm (r-ps): Update to 1.7.4.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus fef2e3658d
gnu: r-ecp: Update to 3.1.4. 
* gnu/packages/cran.scm (r-ecp): Update to 3.1.4.
[native-inputs]: Add r-r-rsp.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus 1caa6d3c2d
gnu: r-ggvenn: Update to 0.1.10. 
* gnu/packages/cran.scm (r-ggvenn): Update to 0.1.10.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus a5e3a4869d
gnu: r-ggpp: Update to 0.5.2. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.2.
 2023-04-06 17:33:13 +02:00
Ricardo Wurmus 0a696c002d
gnu: r-datawizard: Update to 0.7.1. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.7.1.
 2023-04-06 17:33:12 +02:00
Ricardo Wurmus 60dccb6a62
gnu: r-numbat: Update to 1.3.0. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.0.
 2023-04-06 17:33:12 +02:00
Leo Famulari e1336dc296
gnu: linux-libre 4.14: Update to 4.14.312. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.312.
(linux-libre-4.14-pristine-source): Update hash.
 2023-04-06 11:27:00 -04:00
Leo Famulari d3a5a5b633
gnu: linux-libre 4.19: Update to 4.19.280. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.280.
(linux-libre-4.19-pristine-source): Update hash.
 2023-04-06 11:26:59 -04:00
Leo Famulari 8485e6e0b7
gnu: linux-libre 5.4: Update to 5.4.240. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.240.
(linux-libre-5.4-pristine-source): Update hash.
 2023-04-06 11:26:59 -04:00
Leo Famulari f70c6e1012
gnu: linux-libre 5.10: Update to 5.10.177. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.177.
(linux-libre-5.10-pristine-source): Update hash.
 2023-04-06 11:26:59 -04:00
Leo Famulari 15fd6959d3
gnu: linux-libre 5.15: Update to 5.15.106. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.106.
(linux-libre-5.15-pristine-source): Update hash.
 2023-04-06 11:26:53 -04:00