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57615 commits

Author SHA1 Message Date
Naga Malleswari 54a9fe3429
doc: Fix typo in example.
* doc/guix.texi (Base Services)[file->udev-rule]: Correct misspelt
"user-account".

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-24 13:10:43 +01:00
Naga Malleswari 022767d7c1
doc: Fix typo.
* doc/guix.texi (Invoking guix time-machine): Fix typo.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-24 13:07:17 +01:00
Guillaume Le Vaillant 151f3d416c
gnu: Add qgis.
* gnu/packages/geo.scm (qgis): New variable.

Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz>
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2020-03-24 11:42:41 +01:00
Arun Isaac d13d28265f
licenses: Add QWT 1.0 license.
* guix/licenses.scm (qwt1.0): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-03-24 11:42:41 +01:00
Arun Isaac 5d33e789c2
licenses: Add Open Government Licence for Public Sector Information.
* guix/licenses.scm (ogl-psi1.0): New variable.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant f7ac2fe1ce
gnu: Add saga.
* gnu/packages/geo.scm (saga): New variable.
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant 9fce591479
gnu: Add grass.
* gnu/packages/geo.scm (grass): New variable.
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant efcb05083f
gnu: Add python-owslib.
* gnu/packages/python-xyz.scm (python-owslib): New variable.
2020-03-24 11:42:40 +01:00
Ricardo Wurmus b0d1da986b
gnu: r-harmony: Update to 0.1.
* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 8ff6386491
gnu: r-shiny: Update to 1.4.0.2.
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus c649d31957
gnu: r-tximport: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus c10bef9bd3
gnu: r-caret: Update to 6.0-86.
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 1e40a27465
gnu: r-batchtools: Update to 0.9.13.
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 6005efa40f
gnu: r-mcmc: Update to 0.9-7.
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d3836473de
gnu: r-proc: Update to 1.16.2.
* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1.
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 2f445f0da3
gnu: r-radiant-data: Update to 1.3.4.
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus ff248f41cb
gnu: r-patchwork: Update to 1.0.0.
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus f7a21df523
gnu: r-robustbase: Update to 0.93-6.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 7e349066e6
gnu: r-hmisc: Update to 4.4-0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1.
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d16a4d1f96
gnu: r-dt: Update to 0.13.
* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus f871696911
gnu: r-locfit: Update to 1.5-9.2.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus e0d6a7da74
gnu: Add r-randomizr.
* gnu/packages/cran.scm (r-randomizr): New variable.
2020-03-24 11:05:59 +01:00
Guillaume Le Vaillant 47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb.
* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
  option in the build phase.
2020-03-24 09:31:43 +01:00
Michael Rohleder 0f96fd6454
gnu: dialog: Update to 1.3-20200228.
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-23 21:17:55 -04:00
Leo Famulari aae5f89db0
gnu: Git: Update to 2.26.0.
* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
2020-03-23 21:17:46 -04:00
Mathieu Othacehe acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input."
This reverts commit 4233e74b39.
2020-03-23 21:51:25 +01:00
Leo Famulari a11237e40a
gnu: Mutt: Update to 1.13.4.
* gnu/packages/mail.scm (mutt): Update to 1.13.4.
[source]: Prefer HTTPS URL and replace FTP URL with HTTP.
2020-03-23 15:53:11 -04:00
Alexandros Theodotou 0a6f68982b
gnu: sord: Add pcre to inputs.
* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
2020-03-23 20:48:49 +01:00
Brice Waegeneire 7884fc434f
gnu: youtube-dl: Add zsh completion.
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
install-completion.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 19:02:46 +01:00
Brice Waegeneire 4233e74b39
gnu: youtube-dl: Add 'ffmpeg' as input.
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
wrap-executable.
[inputs]: Add ffmpeg.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 19:02:44 +01:00
Brice Waegeneire 1a5443e86b
doc: Fix typo in example.
* doc/guix.texi (Invoking guix deploy): Fix example to use '%user'
variable defined above.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 18:57:01 +01:00
Brice Waegeneire a9f2c210f3
system: Export 'operating-system-kernel-loadable-modules'.
* gnu/system.scm: Export 'operating-system-kernel-loadable-modules'.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 18:52:31 +01:00
Maxim Cournoyer f2c698bd3e
gnu: emacs-lua-mode: Update to 20191204.
* (emacs-lua-mode): Update to 20191204.
2020-03-23 13:49:39 -04:00
Maxim Cournoyer 09c09c4c7c
gnu: emacs-ert-runner: Update to 0.8.0.
* (emacs-ert-runner): Update to 0.8.0.
2020-03-23 13:49:38 -04:00
Maxim Cournoyer 80168c4b5b
gnu: emacs-dash: Update to 2.17.0.
* (emacs-dash): Update to 2.17.0.
2020-03-23 13:49:38 -04:00
Mathieu Othacehe f9b6f75d1c
installer: Fix cow-store umount issue.
* gnu/installer/final.scm (kill-cow-users): Ignore exception that could be
raised if a process disappears between reading its pid and its maps file.
2020-03-23 18:46:40 +01:00
Tobias Geerinckx-Rice 5490b2c733
gnu: parallel: Update to 20200322.
* gnu/packages/parallel.scm (parallel): Update to 20200322.
2020-03-23 18:35:27 +01:00
Tobias Geerinckx-Rice c2d468a111
gnu: extremetuxracer: Update to 0.8.0.
* gnu/packages/games.scm (extremetuxracer): Update to 0.8.0.
2020-03-23 18:35:27 +01:00
Alexandros Theodotou d3e7282ec3
gnu: Add zlfo.
* gnu/packages/music.scm (zlfo): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-23 15:39:02 +01:00
Alexandros Theodotou 360ebe50b5
gnu: Add ztoolkit-rsvg.
* gnu/packages/audio.scm (ztoolkit-rsvg): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> [with modifications]
2020-03-23 15:39:01 +01:00
Alexandros Theodotou 2f4faccc6f
gnu: Add ztoolkit.
* gnu/packages/audio.scm (ztoolkit): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-23 15:39:00 +01:00
Roel Janssen 7ff6395100
gnu: Add circos.
* gnu/local.mk: Register circos-remove-findbin.patch.
* gnu/packages/patches/circos-remove-findbin.patch: New file.
* gnu/packages/perl.scm: New variable.
2020-03-23 11:42:36 +01:00
Alexandros Theodotou 591faabd8c
gnu: Add python-gcovr.
* gnu/packages/python-xyz.scm (python-gcovr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-23 10:48:18 +01:00