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Author SHA1 Message Date
Danny Milosavljevic
54891e850a
gnu: containerd: Enable tests. 
* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
 2019-01-07 19:12:14 +01:00
Ricardo Wurmus
1f1e338ad4
gnu: Add missing use-module clause. 
This is a follow-up to 4e5b8f7215.

* gnu/packages/docker.scm: Add missing use-module clause.
 2019-01-07 18:45:23 +01:00
Ricardo Wurmus
d53b23176f
gnu: Add r-corpcor. 
* gnu/packages/cran.scm (r-corpcor): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
e3bb076678
gnu: Add r-ddrtree. 
* gnu/packages/cran.scm (r-ddrtree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
9f33d76c33
gnu: Add r-qlcmatrix. 
* gnu/packages/cran.scm (r-qlcmatrix): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
58bc8857fb
gnu: Add r-combinat. 
* gnu/packages/cran.scm (r-combinat): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
13f5837b4c
gnu: Add r-densityclust. 
* gnu/packages/cran.scm (r-densityclust): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
b614009e6a
gnu: Add r-sparsesvd. 
* gnu/packages/cran.scm (r-sparsesvd): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
fbebccf7f6
gnu: Add r-docopt. 
* gnu/packages/cran.scm (r-docopt): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
45b469a472
gnu: Add r-rvcheck. 
* gnu/packages/cran.scm (r-rvcheck): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
61d7334906
gnu: Add r-tidytree. 
* gnu/packages/cran.scm (r-tidytree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
a6e4413d64
gnu: Add r-colorramps. 
* gnu/packages/cran.scm (r-colorramps): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
e37935e457
gnu: Add r-wordcloud. 
* gnu/packages/cran.scm (r-wordcloud): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
f3949fecb3
gnu: Add r-waveslim. 
* gnu/packages/cran.scm (r-waveslim): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
db084d79ea
gnu: Add r-tiff. 
* gnu/packages/cran.scm (r-tiff): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus
44b0c5b5b1
gnu: Add r-fftwtools. 
* gnu/packages/cran.scm (r-fftwtools): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
71601a5d92
gnu: Add r-softimpute. 
* gnu/packages/cran.scm (r-softimpute): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
03a3ec5e18
gnu: Add r-adgoftest. 
* gnu/packages/cran.scm (r-adgoftest): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
a50abb3614
gnu: Add r-gsl. 
* gnu/packages/cran.scm (r-gsl): New variable.
 2019-01-07 18:44:03 +01:00
Ricardo Wurmus
ced51a204e
gnu: Add r-stabledist. 
* gnu/packages/cran.scm (r-stabledist): New variable.
 2019-01-07 18:44:03 +01:00
Efraim Flashner
dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28. 
* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
 2019-01-07 19:42:41 +02:00
Danny Milosavljevic
4e5b8f7215
gnu: Add containerd. 
* gnu/packages/docker.scm (containerd): New variable.
 2019-01-07 16:41:17 +01:00
Danny Milosavljevic
7f2d67c826
gnu: Add dummy linker for arm-elf. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
 2019-01-07 16:39:35 +01:00
Ricardo Wurmus
2a2760a08f
gnu: Move R packages from geo.scm to cran.scm. 
* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics). 
* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics). 
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics). 
* gnu/packages/web.scm: Remove obsolete use-module clause.
 2019-01-07 15:55:06 +01:00
Ricardo Wurmus
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm 
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
 2019-01-07 15:55:06 +01:00
Jelle Licht
41a010875b
gnu: biber: Update to 2.12. 
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-01-07 15:40:58 +01:00
Ricardo Wurmus
60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm. 
* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
 2019-01-07 15:21:09 +01:00
Ludovic Courtès
67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm. 
Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.

* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here.  Keep
private.
 2019-01-07 15:09:30 +01:00
Jelle Licht
37e461e6f4
gnu: perl-file-slurper: Update to 0.012. 
* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
 2019-01-07 15:08:08 +01:00
Ricardo Wurmus
92ce188331
gnu: Move R packages from web.scm to cran.scm. 
* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
 2019-01-07 15:05:27 +01:00
Pierre Neidhardt
3a3d4d9d54
Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files" 
This reverts commit 5bc2e14add.
 2019-01-07 14:58:40 +01:00
Efraim Flashner
6fd2ed23ac
gnu: mantis: Limit to x86_64-linux. 
* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
 2019-01-07 15:47:34 +02:00
Pierre Neidhardt
e97b23e4bd
gnu: package-elisp-from-package: Clarify docstring. 
* gnu/packages/emacs.scm (package-elisp-from-package)[docstring]: Clarify.
 2019-01-07 14:45:21 +01:00
Tim Gesthuizen
5bc2e14add
gnu: Use package-elisp-from-package for clangs emacs lisp files 
Use package-elisp-from-package for emacs-clang-format and emacs-clang-rename.
Also remove package-from-clang-elisp-file as it is not needed anymore.

* gnu/packages/llvm.scm (emacs-clang-format): Use package-elisp-from-package
* gnu/packages/llvm.scm (emacs-clang-rename): Use package-elisp-from-package
* gnu/packages/llvm.scm (package-from-clang-elisp-file): Remove function
 2019-01-07 14:45:21 +01:00
Tim Gesthuizen
7d5856bd45
gnu: Add package-elisp-from-package 
Add a function to generate package definitions that packages single elisp
files from other packages.

* gnu/packages/emacs.scm (package-elisp-from-package): New function
 2019-01-07 14:45:21 +01:00
Ludovic Courtès
915c6bf60c
gnu: python2-fastlmm: Move to machine-learning.scm. 
This is a step towards removing OCaml modules from the closure
of (gnu packages python).

* gnu/packages/python.scm (python2-fastlmm): Move to...
* gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
 2019-01-07 14:41:01 +01:00
Ludovic Courtès
6fd5a80dbe
gnu: Remove unnecessary build-side module imports. 
* gnu/packages/batik.scm, gnu/packages/boost.scm,
gnu/packages/calendar.scm, gnu/packages/gl.scm,
gnu/packages/lua.scm, gnu/packages/qt.scm, gnu/packages/simulation.scm,
gnu/packages/terminals.scm: Remove unnecessary import of (guix build
utils).
* gnu/packages/emacs.scm: Remove unnecessary imports of (guix ...).
* gnu/packages/libcanberra.scm: Use (srfi srfi-1) instead of (guix build
utils) for 'alist-delete'.
* gnu/packages/wxwidgets.scm: Likewise.
 2019-01-07 14:41:00 +01:00
Ludovic Courtès
db1eb632be
gnu: Move Emacs modes for Dedukti to ocaml.scm. 
This removes OCaml-related modules from the closure of (gnu packages
emacs).

* gnu/packages/emacs.scm (emacs-dedukti-mode, emacs-flycheck-dedukti):
Move to ...
* gnu/packages/ocaml.scm: ... here.
 2019-01-07 14:41:00 +01:00
Ludovic Courtès
59a075047d
gnu: Move OCaml packages away from maths.scm. 
This removes (gnu packages ocaml) and related build system modules from
the closure of (gnu packages maths).

* gnu/packages/maths.scm (ocaml-gsl, ocaml4.01-gsl, cubicle): Move to...
* gnu/packages/ocaml.scm: ... here.
 2019-01-07 14:41:00 +01:00
Ludovic Courtès
54ddb6a154
lint: Avoid 'dirname' call at the top level. 
* guix/scripts/lint.scm (%distro-directory): Wrap in 'mlambda'.
(check-patch-file-names): Adjust accordingly.
 2019-01-07 14:41:00 +01:00
Ludovic Courtès
46cf4cd676
Remove (guix build pull). 
This module had been unused since commit
5f93d97005 (Oct. 2017).

* guix/build/pull.scm: Delete.
* Makefile.am (MODULES): Remove.
 2019-01-07 14:40:59 +01:00
Pierre Neidhardt
3b451546ed
gnu: Add rmlint. 
* gnu/packages/disk.scm (rmlint): New variable.
 2019-01-07 14:32:44 +01:00
Clément Lassieur
e0aa5b5bbf
gnu: Add prosody-http-upload. 
* gnu/packages/messaging.scm (prosody-http-upload): New variable.
 2019-01-07 14:15:57 +01:00
Ricardo Wurmus
e942813aac
gnu: Add mantis. 
* gnu/packages/bioinformatics.scm (mantis): New variable.
 2019-01-07 11:56:18 +01:00
Ricardo Wurmus
ad6f13308b
gnu: Add sdsl-lite. 
* gnu/packages/datastructures.scm (sdsl-lite): New variable.
 2019-01-07 11:56:14 +01:00
Efraim Flashner
c71bbfcca9
gnu: autoconf-archive: Update to 2019.01.06. 
* gnu/packages/autotools.scm (autoconf-archive): Update to 2019.01.06.
 2019-01-07 11:19:06 +02:00
Manolis Ragkousis
4d674b4143
gnu: Add jose. 
* gnu/packages/jose.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-01-07 10:15:37 +02:00