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Author SHA1 Message Date
Valentin Ignatev 537f998be7
gnu: Add rust-serde-macros-0.4. 
* gnu/packages/crates-io.scm (rust-serde-macros-0.4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-26 14:00:53 +02:00
Valentin Ignatev be9655d96d
gnu: Add rust-serde-test-0.9. 
* gnu/packages/crates-io.scm (rust-serde-test-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-26 14:00:52 +02:00
Valentin Ignatev 87c1e7f5c9
gnu: Add rust-serde-0.4. 
* gnu/packages/crates-io.scm (rust-serde-0.4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-26 14:00:52 +02:00
Valentin Ignatev 1516f20a27
gnu: Add rust-serde-0.9. 
* gnu/packages/crates-io.scm (rust-serde-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-26 14:00:52 +02:00
Valentin Ignatev 7881fc114e
gnu: Add rust-serde-derive-0.9. 
* gnu/packages/crates-io.scm (rust-serde-derive-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-26 14:00:52 +02:00
Valentin Ignatev 8119352ffa
gnu: Add rust-serde-codegen-internals-0.14. 
* gnu/packages/crates-io.scm (rust-serde-codegen-internals-0.14):
New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-26 14:00:52 +02:00
Ricardo Wurmus 640d910427
gnu: macs: Update to 2.2.6. 
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.6.
[source]: Fetch from git.
[arguments]: Enable tests, build with default Python.
[inputs]: Replace python2-numpy with python-numpy.
[native-inputs]: Add python-pytest.
 2020-02-26 12:53:23 +01:00
Guillaume Le Vaillant 0e9fc3d61f
gnu: Add cl-dbd-sqlite3. 
* gnu/packages/lisp-xyz.scm (sbcl-dbd-sqlite3, cl-dbd-sqlite3): New variables.
 2020-02-26 11:29:28 +01:00
Guillaume Le Vaillant af469826e2
gnu: Add cl-dbd-postgres. 
* gnu/packages/lisp-xyz.scm (sbcl-dbd-postgres, cl-dbd-postgres): New
  variables.
 2020-02-26 11:29:28 +01:00
Guillaume Le Vaillant 903d0e81a1
gnu: Add cl-dbd-mysql. 
* gnu/packages/lisp-xyz.scm (sbcl-dbd-mysql, cl-dbd-mysql): New variables.
 2020-02-26 11:29:28 +01:00
Guillaume Le Vaillant 47a6cde09c
gnu: Add cl-dbi. 
* gnu/packages/lisp-xyz.scm (sbcl-dbi, cl-dbi): New variables.
 2020-02-26 11:29:28 +01:00
Guillaume Le Vaillant add1a3561f
gnu: Add cl-postmodern. 
* gnu/packages/lisp-xyz.scm (sbcl-postmodern, cl-postmodern): New variables.
 2020-02-26 11:29:27 +01:00
Guillaume Le Vaillant 88dbe39b16
gnu: Add cl-s-sql. 
* gnu/packages/lisp-xyz.scm (sbcl-s-sql, cl-s-sql): New variables.
 2020-02-26 11:29:27 +01:00
Guillaume Le Vaillant acba62d9bd
gnu: Add cl-simple-date-postgres-glue. 
* gnu/packages/lisp-xyz.scm (sbcl-simple-date-postgres-glue,
  cl-simple-date-postgres-glue): New variables.
 2020-02-26 11:29:27 +01:00
Guillaume Le Vaillant f5203d2584
gnu: Add cl-postgres. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-postgres, cl-postgres): New variables.
 2020-02-26 11:29:27 +01:00
Guillaume Le Vaillant c79ea1a217
gnu: Add cl-simple-date. 
* gnu/packages/lisp-xyz.scm (sbcl-simple-date, cl-simple-date,
  ecl-simple-date): New variables.
 2020-02-26 11:29:27 +01:00
Guillaume Le Vaillant 8a6c0f5515
gnu: Add cl-mysql. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-mysql, cl-mysql): New variables.
 2020-02-26 11:29:27 +01:00
Ricardo Wurmus 849f6bc20b
gnu: Add r-rstanarm. 
* gnu/packages/cran.scm (r-rstanarm): New variable.
 2020-02-26 10:12:36 +01:00
Ricardo Wurmus f3de8b6c8a
gnu: Add r-rstan. 
* gnu/packages/cran.scm (r-rstan): New variable.
 2020-02-26 10:12:28 +01:00
Ricardo Wurmus 762d3ca3dd
gnu: Add r-loo. 
* gnu/packages/cran.scm (r-loo): New variable.
 2020-02-26 10:12:14 +01:00
Ricardo Wurmus 70af390f62
gnu: Add r-rstantools. 
* gnu/packages/cran.scm (r-rstantools): New variable.
 2020-02-26 10:12:02 +01:00
Ricardo Wurmus 410cfa78be
gnu: Add r-shinystan. 
* gnu/packages/cran.scm (r-shinystan): New variable.
 2020-02-26 10:11:51 +01:00
Ricardo Wurmus 0ecb3a8bb4
gnu: Add r-dygraphs. 
* gnu/packages/cran.scm (r-dygraphs): New variable.
 2020-02-26 09:18:17 +01:00
Ricardo Wurmus 59c5f85d06
gnu: Remove python-loompy-for-pigx-scrnaseq. 
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): Remove
variable.
 2020-02-26 08:59:11 +01:00
Ricardo Wurmus 4f19106770
gnu: pigx-scrnaseq: Update to 1.1.3. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.3.
[arguments]: Remove.
[inputs]: Remove dropseq-tools and java-picard; add flexbar, jellyfish, and
r-seurat; replace python-loompy-for-pigx-scrnaseq with python-loompy.
 2020-02-26 08:58:06 +01:00
Ricardo Wurmus 290b55c55a
gnu: clang-runtime-3.5: Fix build. 
* gnu/packages/llvm.scm (clang-runtime-3.5)
[inputs]: Add libtirpc.
[arguments]: Add phase to find rpc headers.
 2020-02-25 22:49:20 +01:00
Ricardo Wurmus d2ebdb795d
gnu: Add r-rsconnect. 
* gnu/packages/cran.scm (r-rsconnect): New variable.
 2020-02-25 22:49:20 +01:00
Ricardo Wurmus 91f242357d
gnu: Add r-packrat. 
* gnu/packages/cran.scm (r-packrat): New variable.
 2020-02-25 22:49:20 +01:00
Alexandros Theodotou 6616b22b12
gnu: zrythm: Update to 0.7.573. 
* gnu/packages/music.scm (zrythm): Update to 0.7.573.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-02-25 20:16:55 +01:00
Marius Bakke dcc3f21586
gnu: libzip: Update to 1.6.1. 
* gnu/packages/compression.scm (libzip): Update to 1.6.1.
[inputs]: Add XZ.
 2020-02-25 18:35:34 +01:00
Marius Bakke 93f71b29a5
gnu: python-xmlschema: Update to 1.1.1. 
* gnu/packages/xml.scm (python-xmlschema): Update to 1.1.1.
 2020-02-25 18:35:34 +01:00
Marius Bakke cce5903672
gnu: xapian: Update to 1.4.15. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.15.
 2020-02-25 18:35:34 +01:00
Marius Bakke cbd8d8a879
gnu: libgphoto2: Update to 2.5.24. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.24.
 2020-02-25 18:35:34 +01:00
Marius Bakke eab27d2277
gnu: fluidsynth: Update to 2.1.1. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.1.1.
 2020-02-25 18:35:33 +01:00
Marius Bakke 1b01c103db
gnu: mbedtls-apache: Update to 2.16.5. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.5.
 2020-02-25 18:35:33 +01:00
Marius Bakke adf323e0d7
gnu: ungoogled-chromium: Update to 80.0.3987.122-0.bb952f1 [security fixes]. 
This release fixes CVE-2020-6407 and CVE-2020-6418.

* gnu/packages/chromium.scm (%chromium-version): Set to 80.0.3987.122.
(%ungoogled-revision): Update to 6056988937eb.
(%chromium-origin): Update hash.
(%ungoogled-origin): Download from pull request, update hash.
 2020-02-25 18:35:33 +01:00
Marius Bakke bfce33cdff
gnu: ungoogled-chromium-wayland: Fix build. 
* gnu/packages/chromium.scm (ungoogled-chromium/wayland)[arguments]: Add #:phases.
 2020-02-25 18:35:33 +01:00
Marius Bakke d64584cfb3
gnu: ungoogled-chromium: Add license information about preserved files. 
This is a follow-up to commit f613d459be.

* gnu/packages/chromium.scm (%preserved-third-party-files): Annotate newly
added entries with license information.
 2020-02-25 18:35:33 +01:00
Pierre Neidhardt f5520827b5
gnu: emacs-geiser: Update to 0.11.2. 
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.11.2.
 2020-02-25 15:52:38 +01:00
Valentin Ignatev f93a13c44a
gnu: Add rust-syn-0.11 and rust-synom-0.11. 
* gnu/packages/crates-io.scm (rust-syn-0.11, rust-synom-0.11):
New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:59 +02:00
Valentin Ignatev d489351cf8
gnu: Add rust-walkdir-1.0. 
* gnu/packages/crates-io.scm (rust-walkdir-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:59 +02:00
Efraim Flashner 40b4b6dfee
gnu: rust-regex-syntax-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-regex-syntax-0.3)[arguments]: Don't
skip build.
 2020-02-25 16:48:59 +02:00
Valentin Ignatev 8d90f2c786
gnu: Add rust-quickcheck-0.4. 
* gnu/packages/crates-io.scm (rust-quickcheck-0.4): New variable.
(rust-quickcheck-0.2): Inherit from rust-quickcheck-0.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:59 +02:00
Efraim Flashner ba8984cf3d
gnu: rust-conv-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-conv-0.3)[source]: Add snippet to
relax version requirements.
[arguments]: Don't skip build.
 2020-02-25 16:48:58 +02:00
Valentin Ignatev d3237cd302
gnu: Add rust-regex-0.1 and its cyclic dependencies. 
* gnu/packages/crates-io.scm (rust-regex-0.1, rust-aho-corasick-0.5,
rust-byteorder-0.5, rust-csv-0.14, rust-docopt-0.6, rust-memchr-0.1,
rust-utf8-ranges-0.1): New variables.
(rust-env-logger-0.3)[arguments]: Add missing input.
(rust-quickcheck-0.2)[arguments]: Don't skip build.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:58 +02:00
Valentin Ignatev 2a75243042
gnu: Add rust-obj-0.9. 
* gnu/packages/crates-io.scm (rust-obj-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:58 +02:00
Valentin Ignatev 341069bac6
gnu: Add rust-genmesh-0.6. 
* gnu/packages/crates-io.scm (rust-genmesh-0.6): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:58 +02:00
Valentin Ignatev ef6242415b
gnu: Add rust-cgmath-0.16. 
* gnu/packages/crates-io.scm (rust-cgmath-0.16): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev a836f50b46
gnu: Add rust-cgmath-0.17. 
* gnu/packages/crates-io.scm (rust-cgmath-0.17): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev b2ebcacd2d
gnu: Add rust-rusttype-0.8. 
* gnu/packages/crates-io.scm (rust-rusttype-0.8): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00