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Author SHA1 Message Date
Ricardo Wurmus 4ef9ac7f27
gnu: fastp: Update to 0.23.2. 
* gnu/packages/bioinformatics.scm (fastp): Update to 0.23.2.
[inputs]: Remove zlib; add isa-l and libdeflate.
 2023-02-13 23:09:23 +01:00
Ricardo Wurmus 54b431b7b3
gnu: fastp: Simplify. 
* gnu/packages/bioinformatics.scm (fastp)[arguments]: Simplify gexp.
 2023-02-13 23:09:23 +01:00
Ricardo Wurmus 7260cc75da
gnu: fastqc: Use gexp. 
* gnu/packages/bioinformatics.scm (fastqc)[arguments]: Use gexp; drop
trailing #T from build phase.
[inputs]: Drop package labels.
 2023-02-13 23:09:23 +01:00
Maxim Cournoyer 47f0e022dc
gnu: icedove: Install icons. 
* gnu/packages/gnuzilla.scm (icedove) [phases]: Add install-icons phase.

Series-to: 61391@debbugs.gnu.org
Cover-letter:
Improvements to Icedove (icons, gexps, un-bundling)
Hi Guix,

This series improves our Icedove package a bit, unbundling NSS and producing
its icon so that it looks more tidy in GNOME or other desktop environments.

Thanks!
END
 2023-02-13 16:08:11 -05:00
Maxim Cournoyer fbd3565efc
gnu: icedove: Use more gexps. 
* gnu/packages/gnuzilla.scm (icedove)
[configure]: Use search-input-file and this-package-native-input.
 2023-02-13 16:08:11 -05:00
Maxim Cournoyer 9fd1cd442f
gnu: icedove: Unbundle NSS. 
* gnu/packages/gnuzilla.scm (icedove) [inputs]: Add nss-next.  Remove nspr-4.32.
[configure]: Add "ac_add_options --with-system-nss".
 2023-02-13 16:08:11 -05:00
Maxim Cournoyer cc9633ad07
gnu: Add nss-next. 
* gnu/packages/nss.scm (nss-next): New variable.
 2023-02-13 16:08:11 -05:00
Maxim Cournoyer 7df2b610fc
gnu: Add nspr-next. 
* gnu/packages/nss.scm (nspr-next): New variable.
 2023-02-13 16:08:11 -05:00
Maxim Cournoyer 51d2b76529
gnu: icedove-wayland: Use gexps. 
* gnu/packages/gnuzilla.scm (icedove/wayland)
[inputs]: Set to the empty list.
[arguments]: Use gexps.
 2023-02-13 16:08:10 -05:00
Ricardo Wurmus f223f773a4
gnu: Add r-visnetwork. 
* gnu/packages/cran.scm (r-visnetwork): New variable.
 2023-02-13 22:06:17 +01:00
Hilton Chain dd724cfad4
gnu: picard: Update to 2.8.5. 
* gnu/packages/music.scm (picard): Update to 2.8.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:09 +00:00
Morgan Smith 403066162c
gnu: libnitrokey: Update to 3.8. 
* gnu/packages/security-token.scm (libnitrokey): Update to 3.8.
[description]: Fix typo.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:09 +00:00
Josselin Poiret af1c817c84
gnu: icedove: Update to 102.7.2. 
* gnu/packages/gnuzilla.scm (%icedove-build-id, icedove-version,
thunderbird-source): Update to 102.7.2 build 20230207000000.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:08 +00:00
Felix Gruber 54cd2049e8
gnu: osm2pgsql: Update to 1.8.0. 
* gnu/packages/geo.scm (osm2pgsql): Update to 1.8.0.
[arguments]: Remove -DEXTERNAL_RAPIDJSON configure-flag, since osm2pgsql
1.8.0 does not use rapidjson anymore.
[inputs]: Remove rapidjson.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:08 +00:00
Nicolas Goaziou 2106deb9f6
gnu: fet: Update to 6.8.3. 
* gnu/packages/education.scm (fet): Update to 6.8.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:08 +00:00
Greg Hogan 7696206ce8
gnu: LLVM, Clang, libomp, lld: Update to 15.0.7. 
* gnu/packages/llvm.scm (llvm-15, clang-15, libomp-15, lld-15):
Update to 15.0.7.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:08 +00:00
Greg Hogan ecebf5924c
gnu: r-survival: Update to 3.5-0. 
* gnu/packages/statistics.scm (r-survival): Update to 3.5-0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2023-02-13 18:18:08 +00:00
Christopher Baines e8483a410b
gnu: python-git-multimail: Update to 1.6.0. 
* gnu/packages/version-control.scm (python-git-multimail): Update to 1.6.0.
[arguments]: Patch setup.py to fix finding. README.rst.
 2023-02-13 18:18:08 +00:00
Andreas Enge ee69b60426
gnu: cm: Update to 0.4.1. 
* gnu/packages/algebra.scm (cm): Update to 0.4.1.
 2023-02-13 18:34:56 +01:00
Pierre Neidhardt a9b31c567e
gnu: Add cl-nclasses. 
* gnu/packages/lisp-xyz.scm (cl-nclasses, ecl-nclasses, sbcl-nclasses): New variables.
 2023-02-13 17:15:08 +01:00
Sergey Trofimov 8d8b9a4c0c
gnu: wpa-supplicant: Add netdev group dbus policy. 
The patch allows users in netdev group to control wpa-supplicant via D-Bus
interface.

* gnu/packages/admin.scm (wpa-supplicant)[source]: Add dbus policy patch.
* gnu/packages/patches/wpa-supplicant-dbus-group-policy.patch: New file.

Signed-off-by: Andrew Tropin <andrew@trop.in>
 2023-02-13 16:50:16 +04:00
Efraim Flashner 5b1eab43f0
gnu: universal-ctags: Update to 6.0.20230212.0. 
* gnu/packages/code.scm (universal-ctags): Update to 6.0.20230212.0.
 2023-02-13 11:41:46 +02:00
Efraim Flashner 7c51c9e3d4
gnu: universal-ctags: Install man pages. 
* gnu/packages/code.scm (universal-ctags)[native-inputs]: Add
python-docutils.
 2023-02-13 11:41:46 +02:00
Ricardo Wurmus 32404757a1
etc: Add TeX team. 
* etc/teams.scm.in (tex): New team; add Ricardo to the team.
 2023-02-13 10:19:06 +01:00
Efraim Flashner 2b1383c0a2
gnu: mujs: Update to 1.3.2. 
* gnu/packages/javascript.scm (mujs): Update to 1.3.2.
 2023-02-12 16:56:57 +02:00
Efraim Flashner cddc26a6f9
gnu: zathura: Update to 0.5.2. 
* gnu/packages/pdf.scm (zathura): Update to 0.5.2.
 2023-02-12 16:56:57 +02:00
Efraim Flashner 4cf0c6ee6d
gnu: zathura-pdf-poppler: Update to 0.3.1. 
* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.3.1.
 2023-02-12 16:56:57 +02:00
Efraim Flashner 10049e35ab
gnu: zathura-pdf-mupdf: Update to 0.4.0. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.4.0.
 2023-02-12 16:56:56 +02:00
Efraim Flashner d49be105d5
gnu: zathura-ps: Update to 0.2.7. 
* gnu/packages/pdf.scm (zathura-ps): Update to 0.2.7.
 2023-02-12 16:56:56 +02:00
Efraim Flashner e1081bcdae
gnu: zathura-cb: Update to 0.1.10. 
* gnu/packages/pdf.scm (zathura-cb): Update to 0.1.10.
 2023-02-12 16:56:56 +02:00
Efraim Flashner c0839cbac2
gnu: nheko: Update to 0.11.2. 
* gnu/packages/messaging.scm (nheko): Update to 0.11.2.
[inputs]: Add re2.
 2023-02-12 16:56:56 +02:00
Efraim Flashner 187e3107b9
gnu: mtxclient: Update to 0.9.1. 
* gnu/packages/messaging.scm (mtxclient): Update to 0.9.1.
[inputs]: Add re2.
 2023-02-12 16:56:55 +02:00
Efraim Flashner 3a259f1d50
gnu: coeurl: Update to 0.3.0. 
* gnu/packages/curl.scm (coeurl): Update to 0.3.0.
 2023-02-12 16:56:55 +02:00
Efraim Flashner 455f0bd191
gnu: git-annex: Update to 10.20230126. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230126.
 2023-02-12 16:56:55 +02:00
Efraim Flashner 36da1f2804
gnu: vim: Update to 9.0.1303. 
* gnu/packages/vim.scm (vim): Update to 9.0.1303.
 2023-02-12 16:56:55 +02:00
Efraim Flashner 89cea75fcd
gnu: parallel: Update to 20230122. 
* gnu/packages/parallel.scm (parallel): Update to 20230122.
 2023-02-12 16:56:54 +02:00
Efraim Flashner a4ac96d18e
gnu: tig: Update to 2.5.8. 
* gnu/packages/version-control.scm (tig): Update to 2.5.8.
 2023-02-12 16:56:54 +02:00
Efraim Flashner ab8327d4ce
gnu: translate-shell: Update to 0.9.7.1. 
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.7.1.
 2023-02-12 16:56:54 +02:00
Leo Famulari fb9799ff5f
gnu: WebKit: Update to 2.38.4. 
* gnu/packages/webkit.scm (%webkit-version, webkitgtk, wpewebkit): Update to 2.38.4.
 2023-02-12 13:24:06 +01:00
Leo Famulari 126608f7a9
gnu: dav1d: Update to 1.0.0. 
* gnu/packages/video.scm (dav1d): Update to 1.0.0.
 2023-02-12 12:49:14 +01:00
Efraim Flashner 2b1d1d76e7
gnu: hunspell-dictionary: Update to 7.5.0.3. 
* gnu/packages/hunspell.scm (hunspell-dictionary): Update to 7.5.0.3.
 2023-02-12 11:57:06 +02:00
Efraim Flashner 39d72fcaa1
gnu: libreoffice: Update to 7.5.0.3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 7.5.0.3.
 2023-02-12 11:57:06 +02:00
Liliana Marie Prikler 015777f4c5
gnu: Add esmini. 
* gnu/packages/patches/esmini-no-clutter-log.patch: New file.
* gnu/packages/patches/esmini-use-pkgconfig.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them here.
* gnu/packages/simulation.scm (esmini): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:36 +01:00
Liliana Marie Prikler 4a42167c3c
gnu: Add python-open-simulation-interface. 
* gnu/packages/simulation.scm (python-open-simulation-interface): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:35 +01:00
Liliana Marie Prikler efee3dd7a1
gnu: Add open-simulation-interface. 
* gnu/packages/simulation.scm (open-simulation-interface): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:35 +01:00
Liliana Marie Prikler 98b9f3a4bd
gnu: openscenegraph: Add output for plugins. 
This makes it so that other packages can find plugins via pkg-config and
link to them in the usual manner.

* gnu/packages/graphics.scm (openscenegraph)[outputs]: Add “pluginlib”.
[properties]: Add output synopsis for “pluginlib”.
[arguments]<#:modules>: Use (ice-9 regex).
<#:phases>: Add ‘copy-plugins’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:35 +01:00
Liliana Marie Prikler 629a5936a6
gnu: openscenegraph: Use modern package style. 
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Convert to list
of G-Expressions.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:35 +01:00
Luis Felipe e6ff91bfc4
gnu: ibus-speech-to-text: Fix lint warnings. 
* gnu/packages/ibus.scm (ibus-speech-to-text)[inputs]: Add
bash-minimal.
Move desktop-file-utils, glib:bin and gobject-introspection ...
[native-inputs] ... here.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:35 +01:00
Luis Felipe 59e2e0744b
gnu: ibus-speech-to-text: Fix execution of ibus-engine-stt. 
Fixes <https://issues.guix.gnu.org/61236>.

* gnu/packages/ibus.scm (ibus-speech-to-text)[#:phases]
<add-install-to-pythonpath>: New phase.
<wrap-additional-paths>: Use getenv to set GUIX_PYTHONPATH and GI_TYPELIB_PATH.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-02-12 08:45:34 +01:00
Andrew Tropin 2419a16365
gnu: tree-sitter-grammar: Migrate to tree-sitter-build-system. 
gnu/packages/tree-sitter.scm (tree-sitter-delete-generated-files): New
variable.
(tree-sitter-grammar): Remove source-directory argument, add inputs argument,
change package names, remove custom build code, update build system to
tree-sitter-build-system.
(tree-sitter-grammar-html): Rename to tree-sitter-html.
 2023-02-12 11:32:23 +04:00