4eaf90470f
etc: Add teams.scm.
...
* etc/teams.scm.in: New file.
* configure.ac: Generate executable.
* .gitignore: Ignore generated file.
2022-07-03 14:12:32 +02:00
cba98b58bf
services: Add anonip-service-type.
...
* gnu/services/web.scm (anonip-configuration): New record type.
(anonip-configuration?, anonip-configuration-anonip,
anonip-configuration-input, anonip-configuration-output,
anonip-configuration-skip-private?, anonip-configuration-column,
anonip-configuration-replacement, anonip-configuration-ipv4mask,
anonip-configuration-ipv6mask, anonip-configuration-increment,
anonip-configuration-delimiter, anonip-configuration-regex): New procedures.
(anonip-service-type): New service type.
* doc/guix.texi (Log Rotation): Add subheading for Anonip Service.
2022-07-03 14:12:32 +02:00
e0d2f8164e
gnu: sbcl: Disable SB-SIMD module.
...
SB-SIMD gets enabled only on x86_64 CPUs supporting AVX2 instructions,
and some x86_64 CPUs don't.
Fixes <https://issues.guix.gnu.org/56353 >.
Reported by Wensheng Xie <xiewensheng@hotmail.com>.
* gnu/packages/lisp.scm (sbcl)[arguments]: Disable SB-SIMD in the 'build' and
'build-doc' phases.
2022-07-03 12:07:31 +02:00
f89b581148
gnu: nim: Update to 1.6.6.
...
* gnu/packages/nim.scm (nim): Updated to 1.6.6.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-03 10:12:24 +01:00
12787d532f
gnu: propeller-binutils: Remove source patches.
...
None of the patches seem to apply. The patches that are not used with binutils
are probably too new for the specific commit used here, and the patches that
were once applied have probably been removed, so just don't apply any patches.
* gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that
don't apply.
2022-07-03 10:11:24 +01:00
207ef8758e
gnu: java-xpp3: Download source from ci.guix.gnu.org.
...
The www.extreme.indiana.edu site is now serving a redirect:
This site has been deprecated. You can access an archive of this site at
https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/ .
Because this isn't a 404, as it probably should be, guix follows this redirect
and gets some content that isn't the file it asked for.
To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for
the file instead.
* gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org.
2022-07-03 10:11:24 +01:00
c145e51844
gnu: curl: Skip failing test on 32-bit architectures.
...
* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom
'skip-failing-tests phase on all 32-bit architectures.
2022-07-03 10:07:46 +03:00
89fe091bb4
gnu: curl: Fix build on some systems.
...
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around
implicit function declaration.
* gnu/packages/patches/curl-easy-lock.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2022-07-03 10:07:38 +03:00
cec5a522e1
gnu: Add sqls 0.2.18.
...
* gnu/packages/databases (sqls): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:07 +02:00
eed4494da7
gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0.
...
* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:07 +02:00
9b6226bcda
gnu: Add go-github-com-gorilla-websocket 1.5.0.
...
* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03 01:41:06 +02:00
e7ab3d33ae
challenge: Do nothing when passed zero arguments.
...
Previously, 'guix challenge' without arguments would list live store
items that had been locally built. This was deemed confusing,
especially since 'list-live' is an expensive operation.
* guix/scripts/challenge.scm (guix-challenge): Warn and exit with 0 when
FILES is empty.
* doc/guix.texi (Invoking guix challenge): Update accordingly.
2022-07-03 01:41:06 +02:00
4745be8514
gnu: r-ifultools: Patch in removed macros to fix build.
...
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility
macros.
2022-07-02 23:56:10 +02:00
a0142125e6
gnu: r-with-tests: Update to 4.2.1.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
2022-07-02 23:56:10 +02:00
3bb39fc370
gnu: r-tcgabiolinks: Update to 2.24.3.
...
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02 23:56:10 +02:00
af06365a3e
gnu: r-bionetstat: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02 23:56:10 +02:00
26981da96b
gnu: r-bgeedb: Update to 2.22.3.
...
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02 23:56:10 +02:00
5f03154c15
gnu: r-ggbio: Update to 1.44.1.
...
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02 23:56:10 +02:00
11f30bfa3d
gnu: r-rsubread: Update to 2.10.4.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02 23:56:10 +02:00
0a5a06ed24
gnu: r-biosigner: Update to 1.24.2.
...
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
fbb6489abd
gnu: r-ropls: Update to 1.28.2.
...
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2.
[propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02 23:56:10 +02:00
4aabb20226
gnu: r-genomicscores: Update to 2.8.2.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2.
[propagated-inputs]: Add r-httr.
2022-07-02 23:56:10 +02:00
b7a5534e61
gnu: r-clusterprofiler: Update to 4.4.4.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02 23:56:10 +02:00
a17b7aabfd
gnu: r-batchelor: Update to 1.12.3.
...
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02 23:56:10 +02:00
7ff0669cee
gnu: r-matrixgenerics: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02 23:56:10 +02:00
605eda07df
gnu: r-zellkonverter: Update to 1.6.3.
...
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02 23:56:09 +02:00
febec55f57
gnu: r-simplifyenrichment: Update to 1.6.1.
...
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02 23:56:09 +02:00
c4113d3035
gnu: r-rtracklayer: Update to 1.56.1.
...
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02 23:56:09 +02:00
5298b57d56
gnu: r-organismdbi: Update to 1.38.1.
...
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02 23:56:09 +02:00
4e6026031a
gnu: r-limma: Update to 3.52.2.
...
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02 23:56:09 +02:00
103d4d918f
gnu: r-ensembldb: Update to 2.20.2.
...
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02 23:56:09 +02:00
5888776c87
gnu: r-gld: Update to 2.6.5.
...
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
2022-07-02 23:56:09 +02:00
1f6de97557
gnu: r-clubsandwich: Update to 0.5.7.
...
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
2022-07-02 23:56:09 +02:00
f6c9920f62
gnu: r-ranger: Update to 0.14.1.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
2022-07-02 23:56:09 +02:00
9360df02d1
gnu: r-car: Update to 3.1-0.
...
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
2022-07-02 23:56:09 +02:00
2998060a53
gnu: r-gtools: Update to 3.9.2.2.
...
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2.
2022-07-02 23:56:09 +02:00
e9f9791b14
gnu: r-r-rsp: Update to 0.45.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0.
2022-07-02 23:56:09 +02:00
7d7712c9a0
gnu: r-r-utils: Update to 2.12.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0.
2022-07-02 23:56:09 +02:00
c37911f090
gnu: r-r-methodss3: Update to 1.8.2.
...
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2.
2022-07-02 23:56:08 +02:00
eae36e7aed
gnu: r-rcpparmadillo: Update to 0.11.2.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0.
2022-07-02 23:56:08 +02:00
a12211cd93
gnu: r-dbplyr: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1.
2022-07-02 23:56:08 +02:00
1e57895c5c
gnu: r-rlang: Update to 1.0.3.
...
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3.
2022-07-02 23:56:08 +02:00
2ddb659da1
gnu: r-dbi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3.
2022-07-02 23:56:08 +02:00
54c86cf5f8
gnu: r-nlme: Update to 3.1-158.
...
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158.
2022-07-02 23:56:08 +02:00
764938a242
gnu: r-spacetime: Update to 1.2-8.
...
* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8.
[native-inputs]: Add r-knitr.
2022-07-02 23:56:08 +02:00
621a3350c4
gnu: r-pkgdown: Update to 2.0.5.
...
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5.
2022-07-02 23:56:08 +02:00
3b656f1caf
gnu: r-downlit: Update to 0.4.1.
...
* gnu/packages/cran.scm (r-downlit): Update to 0.4.1.
[propagated-inputs]: Add r-withr.
2022-07-02 23:56:08 +02:00
b16b702db7
gnu: r-clustree: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-clustree): Update to 0.5.0.
2022-07-02 23:56:08 +02:00
6e5a09f701
gnu: r-phangorn: Update to 2.9.0.
...
* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0.
[propagated-inputs]: Add r-generics.
2022-07-02 23:56:08 +02:00
b427be3510
gnu: r-parsnip: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2022-07-02 23:56:08 +02:00
Ricardo Wurmus
Guillaume Le Vaillant
Trevor Richards
Christopher Baines
Efraim Flashner
muradm
Ludovic Courtès