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126827 commits

Author SHA1 Message Date
Ricardo Wurmus 4dd7a424bf
gnu: r-genomicinteractions: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.36.0.

Change-Id: I285ad15b9019c128b78bf0f42158f1275b0e3ee0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 3d30484b1c
gnu: r-interactionset: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.30.0.

Change-Id: I03fd7532d9f32550f50a31c42f32ac2f23dcf12f
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 89937f497b
gnu: r-riboseqr: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.36.0.

Change-Id: I2a1c843c0174fe058373d80e7a5fc1ecb301d900
2023-11-03 22:49:19 +01:00
Ricardo Wurmus a44c944971
gnu: r-riboprofiling: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.32.0.

Change-Id: I226116cdc9408f294d4baca51b341e97a6a99e84
2023-11-03 22:49:19 +01:00
Ricardo Wurmus c7f6a7e802
gnu: r-chipcomp: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.32.0.

Change-Id: I2229de3fc55e54de3a2157e7210ae2981fe0e5f0
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 89f04f09de
gnu: r-bayseq: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.0.

Change-Id: I45768d7f3f6197834df60816697c425166ba49ac
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 11b594314a
gnu: r-qdnaseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.38.0.

Change-Id: I057ba767886780632acb14af13402ce00c1775cd
2023-11-03 22:49:19 +01:00
Ricardo Wurmus af7177b379
gnu: r-cghbase: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.62.0.

Change-Id: Ib7b8ca1ee0c5ffe5831f92b4b26507e53da5a3a4
2023-11-03 22:49:19 +01:00
Ricardo Wurmus cbd1bdf433
gnu: r-marray: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.80.0.

Change-Id: I90a32ab6abf3dac1335822e87aa1b0d123ee3f6b
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 56b23251f2
gnu: r-matrixgenerics: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.14.0.

Change-Id: I1160b591dd0d35a3eaeafb4601ee446aa7eb1308
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 88a4c1ef40
gnu: r-chippeakanno: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.0.

Change-Id: Ic006e5393f6b058daf5b27eb2682dc85c50557f8
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 995fd0fb69
gnu: r-pepsnmr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.20.0.

Change-Id: Ibe357d5e6d70209d0d9efb8828133d07606bf3ca
2023-11-03 22:49:19 +01:00
Ricardo Wurmus e42bd79949
gnu: r-ggtreeextra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.12.0.

Change-Id: Ia904f7aef5cbb322bb22b440356f341dcdc7f29a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus e466895bcb
gnu: r-graph: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.80.0.

Change-Id: I1a81002cebc1a57cfcba4f99ce26ead8fa2bccf5
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 413ebda52e
gnu: r-multibac: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.12.0.

Change-Id: I4c151b28ffb076846d98156fcdc15a49de34c6e3
2023-11-03 22:49:19 +01:00
Ricardo Wurmus e648d5ab5a
gnu: r-mbkmeans: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.18.0.

Change-Id: Ia8808189503731978f7a6bc1e38e08b2517cbb77
2023-11-03 22:49:19 +01:00
Ricardo Wurmus cbf6c8c353
gnu: r-mbecs: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.6.0.
[propagated-inputs]: Remove r-markdown.

Change-Id: I13cb50d3c4dba5eb9f923117b1537d77bce9cc16
2023-11-03 22:49:19 +01:00
Ricardo Wurmus f76b1ecf16
gnu: r-diffbind: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.12.0.

Change-Id: Ib2ca5f8fc3e6d360ac2907ee8a35b7e0ab34251a
2023-11-03 22:49:19 +01:00
Ricardo Wurmus 41219277e1
gnu: r-greylistchip: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.34.0.

Change-Id: I9f10a21502160eceb32cbc65c3d98c462062d4a7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 41a5c3f69a
gnu: r-apeglm: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.24.0.

Change-Id: Iefd5a26f065763ad3bd7d9f73f4407f65a502888
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 79416c905f
gnu: r-apcomplex: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.68.0.

Change-Id: I48bd988a0977d873c59eb80bae2d09d349579cf4
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 9b9726239a
gnu: r-qvalue: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.34.0.

Change-Id: Ibc6f25bf2dcee3d98845fffd456ea923f853fd2a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 721c52eca7
gnu: r-quantsmooth: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.68.0.

Change-Id: I955f492df4f890f4ba6edb046487818e0d7e49d5
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 1f012cc06b
gnu: r-qfeatures: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.12.0.

Change-Id: I8bde97f0af1defc7e476f0d015bcc091f1efbecc
2023-11-03 22:49:18 +01:00
Ricardo Wurmus ec76b47df3
gnu: r-oligo: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.66.0.

Change-Id: Ia6630f2cd201f51fba03c6c6bea896169f38382a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 2b07d57f02
gnu: r-oligoclasses: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.64.0.

Change-Id: I660731bdd916015aa1bfb232de16ed501241f0d7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 2b9d304070
gnu: r-geneplotter: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.80.0.
[native-inputs]: Add r-knitr.

Change-Id: I77172aca93197a61a72898347532c998c58c802a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 41340588c8
gnu: r-zellkonverter: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.0.

Change-Id: Iccc4df8e474867f3318c07d1db1c645ef61816b3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus c994a043c5
gnu: r-zlibbioc: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.0.

Change-Id: I1f2b8d76ff55e094c184ff964600a7fb6d5b0df7
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 299fd237c3
gnu: r-xvector: Update to 0.42.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.42.0.
[propagated-inputs]: Add r-zlibbioc.

Change-Id: If2e4d2d2fe9c0f5efe26761a53b17c7d248aa4f6
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 5e6a4b0975
gnu: r-xmapbridge: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.60.0.

Change-Id: Id2c463f2b6a6a0d9554e6454ed2ed8cb21037fb3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 5e41fdf824
gnu: r-xina: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.20.0.

Change-Id: I9160afa32304721708ed37549c508b127b9b6a13
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 505e9ca855
gnu: r-vsn: Update to 3.70.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.70.0.

Change-Id: Ie8fdb7098eac529621139e22ffe57f6577fa0786
2023-11-03 22:49:18 +01:00
Ricardo Wurmus a497dbaa05
gnu: r-rgreat: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.4.0.

Change-Id: Iae44d5a6304db5fcc2590dc30b44cec74a5d89a1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 34c65d6f66
gnu: r-mixomics: Update to 6.26.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.26.0.

Change-Id: Id18c555d56cace915eaaef2a88107cfd4865f846
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 44d9185cfb
gnu: r-motifstack: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.46.0.
[arguments]: Simplify.

Change-Id: I1def6688307ae3cda991ab1349b6797d36c0e942
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 1eb852ff06
gnu: r-cghcall: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.64.0.

Change-Id: Ia1280ca4acbd79f1ab0ee3e902d6aec3d5b1c682
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 246eac46a8
gnu: r-multtest: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.58.0.

Change-Id: Ibfc1631dcbc9d0bfb2b89b0f92c34132dbc8f77f
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 01365740ea
gnu: r-variantannotation: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: If1ef81366022c829b2510435412bd16586401ae3
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 52922eac72
gnu: r-tximport: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.30.0.

Change-Id: Ica833c44870a941e780a10e8f72ba6bb80d51c87
2023-11-03 22:49:18 +01:00
Ricardo Wurmus b341a01aea
gnu: r-topgo: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.54.0.

Change-Id: Ie001a348300c3ba353e51e6ae35619f6f20608b9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 0b23c3e384
gnu: r-systempiper: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.8.0.

Change-Id: I6efc8605f7b6d19090ef7f538a455c8155783a8d
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 972c874418
gnu: r-sva: Update to 3.50.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.50.0.

Change-Id: I98ed4d820507efde8901413da1b9edd2df026aa9
2023-11-03 22:49:18 +01:00
Ricardo Wurmus c8df5d8f95
gnu: r-survcomp: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.52.0.

Change-Id: I4a655fc134a6300d0783682be17b9a9b17ea073b
2023-11-03 22:49:18 +01:00
Ricardo Wurmus c123daea71
gnu: r-summarizedexperiment: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.32.0.

Change-Id: Ifa23d01efcdb3b76858715b8e3919a9ceb56a9c1
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 3527647b1e
gnu: r-structuralvariantannotation: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.18.0.

Change-Id: Iee4a06a6c0f22ff0b88a583210968a6a752ff2df
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 05062b3a92
gnu: r-stringdb: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.0.

Change-Id: If98b068a6f09036fa4cadbba3569ac24d242d43c
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 8ea882bb48
gnu: r-stager: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.24.0.

Change-Id: I94dfc44a5437e7bcd4c8b6e258ef62cf7ce2515a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus a78f026f27
gnu: r-spectra: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.12.0.
[propagated-inputs]: Add r-metabocoreutils.

Change-Id: I6dcde0647e06d2a051b809c2b9e7cb659ce8733a
2023-11-03 22:49:18 +01:00
Ricardo Wurmus 5e36fcc1e6
gnu: r-slingshot: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.10.0.

Change-Id: I827a2ba68caa4a930c29858dcd2a3840449d1c91
2023-11-03 22:49:17 +01:00