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Author SHA1 Message Date
Christopher Baines 4d372cb9a2
gnu: Add ruby-mathn. 
* gnu/packages/ruby.scm (ruby-mathn): New variable.
 2018-10-05 21:25:42 +01:00
Christopher Baines 2c7cb711e9
gnu: ruby-sass-spec: Fix spec expectation. 
This fixes building ruby-sass with Ruby 2.5.

* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
 2018-10-05 21:25:42 +01:00
Christopher Baines 39ecb977d3
gnu: ruby-term-ansicolor: Fix test for Ruby 2.5. 
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
 2018-10-05 21:25:41 +01:00
Christopher Baines 0b060e3486
gnu: ruby-shindo: Remove -rubygems flags. 
These have been removed in Ruby 2.5.

* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
 2018-10-05 21:25:41 +01:00
Christopher Baines 357450dca0
gnu: bioruby: Update to 1.5.2. 
This works with Ruby 2.5.

* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
 2018-10-05 21:25:39 +01:00
Kei Kebreau b0e829c632
gnu: gnucash-docs: Update to 3.3. 
The documentation on SourceForge is now located in the same directory as the
source code.

* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
 2018-10-05 14:28:44 -04:00
Kei Kebreau 73ca145a7e
gnu: gnucash: Update to 3.3. 
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
 2018-10-05 13:41:08 -04:00
Tobias Geerinckx-Rice fc4738149f
gnu: Add bastet. 
* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-05 19:32:45 +02:00
Tobias Geerinckx-Rice b008a12ae7
gnu: fdroidserver: Update to 1.0.10. 
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice 8713c03e55
gnu: audacity: Don't use unstable tarball. 
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice 3f90445692
gnu: filezilla: Update to 3.37.4. 
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
 2018-10-05 19:30:09 +02:00
Tobias Geerinckx-Rice 38aca674c3
gnu: libfilezilla: Update to 0.14.0. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
 2018-10-05 19:30:08 +02:00
Ricardo Wurmus a6798218be
gnu: samtools-0.1: Adjust to match changes in samtools. 
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 8e72f0f319
gnu: deeptools: Update to 3.1.2. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 939882f734
gnu: python-pysam: Update to 0.15.1. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 1a28b9ab55
gnu: python-plotly: Add python-pandas to inputs. 
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus f79b59e311
gnu: bcftools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus 4ae4a15232
gnu: samtools: Update to 1.9. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
 2018-10-05 09:21:54 +02:00
Ricardo Wurmus bd5f5eece9
gnu: htslib: Update to 1.9. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
 2018-10-05 09:21:50 +02:00
Mark H Weaver 4a5e2a90d8
gnu: icecat: Add fixes from mozilla-esr60 [security fixes]. 
Includes fixes for CVE-2018-12386 and CVE-2018-12387.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
 2018-10-04 21:35:01 -04:00
Mark H Weaver 2e073dc23c
gnu: linux-libre: Update to 4.18.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
 2018-10-04 20:36:32 -04:00
Mark H Weaver 2195636cc1
gnu: linux-libre@4.14: Update to 4.14.74. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
 2018-10-04 20:36:30 -04:00
Mark H Weaver 45f4ddd7c0
gnu: linux-libre@4.9: Update to 4.9.131. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
 2018-10-04 20:36:28 -04:00
Paul Garlick 9e2aa70bad
gnu: petsc-openmpi: Configure with support for MUMPS solver. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags.  Move 'mpi-setup' phase
ahead of 'configure' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-10-04 18:21:17 -04:00
Tobias Geerinckx-Rice d8b042326d
gnu: hiawatha: Set sane run-time directory defaults. 
* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
 2018-10-04 21:28:24 +02:00
Tobias Geerinckx-Rice b9b53fb4ff
gnu: hwloc: Update to 2.0.2. 
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
 2018-10-04 21:28:24 +02:00
Tobias Geerinckx-Rice 7382ecd818
gnu: Add nsd. 
* gnu/packages/dns.scm (nsd): New public variable.
 2018-10-04 21:10:34 +02:00
David Thompson 55b616fd15
gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779. 
* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
 2018-10-04 13:22:02 -04:00
David Thompson e14b3067e3
gnu: guile-next: Add the correct native search paths. 
* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
 2018-10-04 13:21:50 -04:00
Tobias Geerinckx-Rice aff91b0d0b
gnu: hiawatha: Support HTTP/2. 
* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.
 2018-10-04 19:06:06 +02:00
Tobias Geerinckx-Rice 8e87aa0497
gnu: hiawatha: Update to 10.8.3. 
* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
 2018-10-04 18:34:29 +02:00
Tobias Geerinckx-Rice 38a9bf805d
gnu: mbedtls-apache: Update to 2.13.0 [security fixes]. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.
 2018-10-04 17:42:30 +02:00
Arun Isaac 68c0a6260f
gnu: geos: Update to 3.7.0. 
* gnu/packages/geo.scm (geos): Update to 3.7.0.
 2018-10-04 20:01:06 +05:30
Tobias Geerinckx-Rice 0136fbd167
gnu: hexedit: Update to 1.4.2. 
* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.
 2018-10-04 15:59:08 +02:00
Tobias Geerinckx-Rice 4fab0da096
gnu: html-xml-utils: Update to 7.7. 
* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
 2018-10-04 15:59:08 +02:00
Tobias Geerinckx-Rice ddf72f5059
gnu: perl-xml-feed: Update to 0.54. 
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
 2018-10-04 15:59:07 +02:00
Ludovic Courtès ca91d35225
gnu: guix: Update to 1d0be47. 
* gnu/packages/package-management.scm (guix): Update to 1d0be47.
 2018-10-04 11:21:37 +02:00
Ludovic Courtès 1d0be47ab6
progress: Generate valid 'download-progress' traces when the size is unknown. 
Fixes <https://bugs.gnu.org/32895>.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.

* guix/progress.scm (progress-reporter/trace): In 'stop', make sure SIZE
is an integer.  Previously we'd generate a "@ download-progress" trace
with #f for the 'transferred' number when downloading files whose size
is not known in advance.
 2018-10-04 10:24:34 +02:00
Diego Nicola Barbato ff30bb010b
gnu: escpr: Update to 1.6.30. 
* gnu/packages/cups.scm (escpr): Update to 1.6.30.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-04 09:51:47 +02:00
Björn Höfling 63856931db
gnu: opencv: Update to 3.4.3. 
[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]

* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-04 09:48:45 +02:00
Ludovic Courtès 666fb2884a
gnu: r-acclma: Fix uses of @acronym in description. 
* gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments
to @acronym.  The wrong order was causing 'stexi->shtml' to fail (match
error).
 2018-10-04 09:46:43 +02:00
Ludovic Courtès 89fdd9ee0c
services: rottlog: Use command strings in the mcron jobs. 
* gnu/services/admin.scm (default-jobs): Remove the lambda around
"/…/bin/rottlog" to make "herd schedule mcron" more
transparent (otherwise it just says "Lambda function").
 2018-10-04 09:32:51 +02:00
Rutger Helling cd81c9e2a7
gnu: mpv: Update to 0.29.1. 
* gnu/packages/video.scm (mpv): Update to 0.29.1.
 2018-10-04 08:13:57 +02:00
Tobias Geerinckx-Rice 689ca9ba23
gnu: retroarch: Update to 1.7.5. 
* gnu/packages/emulators.scm (retroarch): Update to 1.7.5.
 2018-10-04 06:28:27 +02:00
Tobias Geerinckx-Rice 1fc346de4e
gnu: retroarch: Don't use unstable tarball. 
* gnu/packages/emulators.scm (retroarch)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-04 06:28:27 +02:00
Tobias Geerinckx-Rice fe30eb6d24
gnu: ephoto: Fix typos in description. 
* gnu/packages/enlightenment.scm (ephoto)[description]: Fix typos.
Wrap at 80 columns.
 2018-10-04 06:28:27 +02:00
Tobias Geerinckx-Rice 104f475f9b
gnu: perl-string-copyright: Update to 0.003006. 
* gnu/packages/license.scm (perl-string-copyright): Update to 0.003006.
 2018-10-04 06:28:26 +02:00
Tobias Geerinckx-Rice 91a3c8005d
gnu: rpm: Update to 4.14.2. 
* gnu/packages/package-management.scm (rpm): Update to 4.14.2.
[arguments]: Rename 'set-nspr-search-path' phase to
'set-nss-library-path' and remove CPATH work-around.
Remove obsolete 'fix-rpm-symlinks' phase.
[home-page]: Drop www.
 2018-10-04 06:28:26 +02:00
Tobias Geerinckx-Rice 88abd73eeb
gnu: imapfilter: Update to 2.6.12. 
* gnu/packages/mail.scm (imapfilter): Update to 2.6.12.
 2018-10-04 06:28:26 +02:00
Tobias Geerinckx-Rice b1d30f46c1
gnu: imapfilter: Don't use unstable tarball. 
* gnu/packages/mail.scm (imapfilter)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-04 06:28:26 +02:00