Commit graph

125710 commits

Author SHA1 Message Date
Afkhami, Navid 48f9484483
gnu: Add r-metacell.
* gnu/packages/bioinformatics.scm (r-metacell): New variable.
2023-10-17 14:25:36 +02:00
Afkhami, Navid 54274a5a3b
gnu: Add r-tgutil.
* gnu/packages/statistics.scm (r-tgutil): New variable.
2023-10-17 14:25:36 +02:00
Afkhami, Navid bd12aead95
gnu: r-tgstat: Update to 2.3.24.
* gnu/packages/statistics.scm (r-tgstat): Delete variable.
* gnu/packages/cran.scm (r-tgstat): Add updated variable here.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Remove r-rcpp.
[arguments]: Remove fix-isnan phase.
2023-10-17 14:25:36 +02:00
Afkhami, Navid 278432cb77
gnu: r-tgconfig: Update to 0.1.2-1.15cf199.
* gnu/packages/statistics.scm (r-tgconfig): Update to 0.1.2-1.15cf199.
[source]: Fetch from github.
[properties]: Add field.
[home-page]: Use new URL.
[description]: Expand.
[license]: Use GPLv3 or later.
2023-10-17 14:25:36 +02:00
Afkhami, Navid ea9334e113
gnu: r-svglite: Update to 2.1.2.
* gnu/packages/statistics.scm (r-svglite): Update to 2.1.2.
[properties]: Add field.
[home-page]: Do not use repository URL.
2023-10-17 14:25:36 +02:00
Ricardo Wurmus 018567adb7
gnu: singularity: Do not override PATH.
* gnu/packages/linux.scm (singularity)[arguments]: Prepend coreutils, but
don't make it impossible to pick up other tools.
2023-10-17 14:07:59 +02:00
Ricardo Wurmus 2fb94a505b
gnu: singularity: Modernize package definition.
* gnu/packages/linux.scm (singularity)[source]: Remove trailing #t from
snippet.
[arguments]: Use G-expressions; remove trailing #t from build phases.
[inputs]: Drop labels; add coreutils.
2023-10-17 13:58:48 +02:00
Christopher Baines d389f67773
gnu: guix-build-coordinator: Update to 0-90.3446355.
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-90.3446355.
2023-10-17 10:36:22 +01:00
Bruno Victal 1c0236aae4
gnu: mympd: Update to 12.1.0.
* gnu/packages/mpd.scm (mympd): Update to 12.1.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:32:38 +01:00
Paul A. Patience 33cbb0ca8d
gnu: nomad-optimizer: Update to 4.3.1.
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.3.1.
[native-inputs]: Remove python-wrapper and python-cython. Add openmpi.
[arguments]: Use G-expressions. Remove #:imported-modules and #:modules.
<#:configure-flags>: Remove -DBUILD_INTERFACE_PYTHON=ON.
<#:phases>: Remove 'fix-sources-for-build' phase. Rename
'fix-sources-for-tests' phase to 'fix-tests' and update it. Add
'mpi-setup' phase.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:28:27 +01:00
André Batista 67dcc64110
gnu: irssi: Update to 1.4.5.
* gnu/packages/irc.scm (irssi): Update to 1.4.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:27:45 +01:00
Paul A. Patience b7d4ed43df
gnu: mmg: Update to 5.7.2.
* gnu/packages/graphics.scm (mmg): Update to 5.7.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:27:21 +01:00
Paul A. Patience d07e75a4ce
gnu: python-trimesh: Update to 3.23.5.
* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:26:55 +01:00
Paul A. Patience 4aa6a924b2
gnu: python-pyvista: Update to 0.42.3.
* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:26:23 +01:00
Jean-Pierre De Jesus DIAZ c8312a6d07
gnu: crypto++: Add tunable property.
* gnu/packages/crypto.scm (crypto++): Set tunable? property to true.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:24:01 +01:00
Jean-Pierre De Jesus DIAZ 1138445494
gnu: crypto++: Update to 8.8.0.
* gnu/packages/crypto.scm (crypto++): Update to 8.8.0.
[arguments]: Update to new style. Remove .so symbolic link installation as the
project does it now. Fix cross-compilation for GNU/Linux and MinGW targets.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-17 10:23:55 +01:00
Efraim Flashner 0e467b7b0b
gnu: valeronoi: Reformat with guix style.
* gnu/packages/engineering.scm (valeronoi): Process package with guix
style.
2023-10-17 11:22:36 +03:00
Efraim Flashner 58452ecdb4
gnu: valeronoi: Unbundle catch2 header.
* gnu/packages/engineering.scm (valeroni)[source]: Add snippet to remove
bundled header.
[native-inputs]: Add catch2.
2023-10-17 11:22:32 +03:00
Efraim Flashner 047589b166
gnu: valeronoi: Update to 0.2.0.
* gnu/packages/engineering.scm valeronoi: Update to 0.2.0.
[inputs]: Remove qtbase-5 and qtsvg-5; add qtbase and qtsvg.
2023-10-17 11:19:59 +03:00
David Thompson b437896e87
gnu: Add guile-hoot.
* gnu/packages/guile-xyz.scm (guile-hoot): New variable.
2023-10-16 12:10:28 -04:00
Maxim Cournoyer ff11cbc2e9
gnu: libcamera: Disable log_process test on aarch64.
* gnu/packages/networking.scm (libcamera) [arguments]
[aarch64]: Add disable-problematic-tests phase.
2023-10-16 11:16:01 -04:00
Maxim Cournoyer 8d6838dfcd
gnu: maliit-framework: Disable two mimpluginmanager tests.
* gnu/packages/freedesktop.scm (maliit-framework) [arguments]: Override the
check phase to disable the ft_mimpluginmanager and ut_mimpluginmanager tests.
2023-10-16 11:16:01 -04:00
Maxim Cournoyer 9c2b2a0105
gnu: qtwayland-5: Disable tst_surface test on aarch64-linux.
* gnu/packages/qt.scm (qtwayland-5) [arguments]
[target-aarch64?]: Disable the tst_surface test.
2023-10-16 11:16:01 -04:00
Maxim Cournoyer 31cb6b923e
gnu: qtdeclarative: Add a debug output.
* gnu/packages/qt.scm (qtdeclarative) [outputs]: New field.

Series-version: 3
Series-to: 65922@debbugs.gnu.org
Series-prefix: qt-team
Cover-letter:
Avoid capturing python in qtbase, reinstate tests
Thes series removes Python from the closure of qtbase, both for versions 5.15
and 6.5.  It also reinstate a few tests that was made possible thanks to
discussions with upstream following reported the issues.
END
2023-10-16 11:16:01 -04:00
Maxim Cournoyer 2334a24a04
gnu: qtbase: Disable problematic tests on powerpc64le.
* gnu/packages/qt.scm (qtbase) [arguments] [powerpc64le]: Disable the
tst_qpainter, tst_qprocess and tst_qsqlthread tests in the check phase.

Series-changes: 3
- New commit
2023-10-16 11:16:01 -04:00
Maxim Cournoyer 6b8e35ce23
gnu: qtbase: Reinstate date related tests.
* gnu/packages/qt.scm (qtbase) [native-inputs]: Add tzdata-for-tests.
[arguments]: Set the TZDIR and TZ environment variables, and reinstate the
tst_qdate, tst_qtimezone and tst_qdatetime tests in the check phase.
(qtbase-5) [source]: Replace qtbase-use-TZDIR.patch with
qtbase-5-use-TZDIR.patch.
* gnu/packages/patches/qtbase-use-TZDIR.patch: Refresh patch with upstream
version, and preserve the old one for qtbase@5 as...
* gnu/packages/patches/qtbase-5-use-TZDIR.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Register new patch.

Series-changes: 2
- Use old TZDIR patch for qtbase@5 (the new one doesn't apply)
2023-10-16 11:16:01 -04:00
Maxim Cournoyer 3eba1dc655
gnu: qtbase: Add $TZDIR to native search paths.
* gnu/packages/qt.scm (qtbase) [native-search-paths]: Add $TZDIR.
2023-10-16 11:16:00 -04:00
Maxim Cournoyer 26b02f7797
gnu: qtbase: Do not capture Python (again).
Fixes <https://issues.guix.gnu.org/65457>.

* gnu/packages/qt.scm (qtbase-5) [arguments]: Add #:disallowed-references
argument to guard against the problem reoccurring in the future.
Add do-not-capture-python phase.
(qtbase) [arguments]: Update do-not-capture-python phase.
2023-10-16 11:16:00 -04:00
Maxim Cournoyer b6a070d2a3
gnu: git-lfs: Patch /bin/sh references.
* gnu/packages/version-control.scm (git-lfs)
[arguments]: Add patch-/bin/sh phase.

Change-Id: I2d455e683e4f6e30cd32f5b1fdaccac71616826c
Reviewed-by: Ludovic Courtès <ludo@gnu.org>
2023-10-16 09:53:19 -04:00
Wilko Meyer ce12a4118a
gnu: Add xsv.
* gnu/packages/crates-io.scm (xsv): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-16 12:34:57 +03:00
Wilko Meyer bebf130832
gnu: Add rust-csv-index-0.1.
* gnu/packages/crates-io.scm (rust-csv-index-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-16 12:34:57 +03:00
Wilko Meyer 0cedbd9cdb
gnu: Add rust-chan-0.1.
* gnu/packages/crates-io.scm (rust-chan-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-16 12:34:57 +03:00
Wilko Meyer 72522fd1ef
gnu: Add rust-filetime-0.1.
* gnu/packages/crates-io.scm (rust-filetime-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-16 12:34:57 +03:00
Sören Tempel 435090fa3f
pack: Allow setting a custom image tag for Docker images
Previously, the image repository name was automatically computed from
the packages in the manifest without allowing the user to set a custom
one. As such, changing the packages in the manifest would result in a
new image name. Thereby requiring updating documentation et cetera when
using `docker load` directory on the resulting image.

Inspired by `docker build -t`, this commit adds a new Docker-specific
option to `guix pack` which allows setting a custom repository name for
the resulting image. If this option is not specified, pack falls back
to computing the name from the manifest. Therefore, this change is
entirely backwards compatible.

Documentation has been added with: 373ec2cf8c.

* guix/scripts/pack.scm (guix-pack): Add --image-tag option.
(%docker-format-options): New constant.
(show-docker-format-options): New procedure.
(show-docker-format-options/detailed): New procedure.
(docker-image): Allow setting a custom
repository name for the created docker image via extra-options.

Signed-off-by: Sören Tempel <soeren@soeren-tempel.net>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-16 09:08:13 +02:00
Efraim Flashner a0d2ecde94
gnu: tootle: Deprecate in favor of tuba.
* gnu/packages/mastodon.scm (tootle): Deprecate for tuba.
* gnu/packages/patches/tootle-glib-object-renaming.patch,
gnu/packages/patches/tootle-reason-phrase.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2023-10-15 14:25:29 +03:00
Liliana Marie Prikler ef026e68fe
etc: snippets: Do not match unintended quotes.
* etc/snippets/tempel/scheme-mode (origin): Unquote ‘git-fetch’, ‘svn-fetch’,
‘hg-fetch’, ‘cvs-fetch’, and ‘bzr-fetch’.  Use ‘otherwise’ instead of ‘t’.
2023-10-15 12:28:19 +02:00
Liliana Marie Prikler f0a01ff42a
gnu: Add fast-downward.
* gnu/packages/maths.scm (fast-downward): New variable.
2023-10-15 12:28:19 +02:00
Liliana Marie Prikler f45114f38e
gnu: tracker-miners: Update to 3.3.2.
* gnu/packages/gnome.scm (tracker-miners): Update to 3.3.2.
2023-10-15 12:28:19 +02:00
Liliana Marie Prikler 5ca2a8ad94
gnu: Add ablorb.
* gnu/packages/web.scm (ablorb): New variable.
2023-10-15 12:28:19 +02:00
Liliana Marie Prikler 48286d4da4
gnu: gash-utils: Fix build.
* gnu/packages/shells.scm (gash-utils)[arguments]: Add ‘skip-failing-tests’
phase.
[native-inputs]: Add autoconf and automake.
2023-10-15 12:28:19 +02:00
Efraim Flashner e1600546b9
gnu: xcb-util-errors: Fix cross-compiling.
* gnu/packages/xorg.scm (xcb-util-errors)[native-inputs]: When
cross-compiling add libxcb.
2023-10-15 13:12:16 +03:00
Efraim Flashner 302b14fb19
gnu: xorg-server-xwayland: Fix cross-compiling.
* gnu/packages/xorg.scm (xorg-server-xwayland)[native-inputs]: When
cross-compiling add pkg-config-for-build, wayland, wayland-protocols.
2023-10-15 13:11:39 +03:00
Efraim Flashner f668e5c8d2
gnu: egl-wayland: Fix cross-compiling.
* gnu/packages/xorg.scm (egl-wayland)[native-inputs]: When
cross-compiling add pkg-config-for-build, wayland, wayland-protocols.
2023-10-15 13:10:50 +03:00
Efraim Flashner bc1634a197
gnu: libxkbcommon: Fix cross-compiling.
* gnu/packages/xdisorg.scm (libxkbcommon)[native-inputs]: When
cross-compiling add pkg-config-for-build.
2023-10-15 13:10:10 +03:00
Efraim Flashner 8f84587be7
gnu: swaybg: Fix cross-compiling.
* gnu/packages/wm.scm (swaybg)[inputs]: When cross-compiling add
wayland-protocols.
[native-inputs]: When cross-compiling add pkg-config-for-build, wayland.
2023-10-15 13:08:54 +03:00
Efraim Flashner d7c5456a39
gnu: sway: Fix cross-compiling.
* gnu/packages/wm.scm (sway)[native-inputs]: When cross-compiling add
pkg-config-for-build, wayland.
2023-10-15 13:08:18 +03:00
Efraim Flashner 76b706c71c
gnu: wlroots: Fix cross-compiling.
* gnu/packages/wm.scm (wlroots)[arguments]: Adjust custom phases to also
search for files from native-inputs.
[native-inputs]: Add wayland. When cross-compiling add
pkg-config-for-build.
2023-10-15 13:06:53 +03:00
Efraim Flashner dc2cfc9bea
gnu: poppler: Fix cross-compiling.
* gnu/packages/pdf.scm (poppler)[native-inputs]: When cross-compiling
add pkg-config-for-build.
2023-10-15 13:06:03 +03:00
Efraim Flashner cee779c800
gnu: libtirpc: Keep reference to mit-krb5 when cross-compiling.
* gnu/packages/onc-roc.scm (libtirpc)[arguments]: When cross-compiling
adjust the pkg-config file to retain a reference to mit-krb5.
2023-10-15 13:04:04 +03:00
Efraim Flashner a888342f89
gnu: nss: Fix cross-compiling.
* gnu/packages/nss.scm (nss)[arguments]: Adjust configure-flags when
cross-compiling to correctly set the target architecture and kernel.
Adjust the custom 'configure-phase when cross-compiling to use the
correct C++ compiler.
2023-10-15 13:02:26 +03:00