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43020 commits

Author SHA1 Message Date
Mark H Weaver 3f6b7699cd
gnu: linux-libre@4.14: Update to 4.14.112.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112.
(%linux-libre-4.14-hash): Update hash.
2019-04-19 14:26:59 -04:00
Mark H Weaver a85190ddd0
gnu: linux-libre@4.9: Update to 4.9.169.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
2019-04-19 14:26:19 -04:00
Nicolò Balzarotti 107850b391
gnu: Add r-styler.
* gnu/packages/cran.scm (r-styler): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-04-19 19:14:24 +02:00
Nicolas Goaziou 2613bab627
gnu: grammalecte: Update to 1.0.1.
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1.
[source]: Update URL.
2019-04-19 18:37:22 +02:00
Ludovic Courtès 60ecacdeaa
gnu: linkchecker: Shorten patch file name.
This file name was too long for 'tar', as reported by 'guix lint'.

* gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch:
Rename to...
* gnu/packages/patches/linkchecker-tests-require-network.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (linkchecker)[source]: Likewise.
2019-04-19 17:46:40 +02:00
Ludovic Courtès 30a6cd7cd0
gnu: ocaml-dose3: Shorten patch file name.
This file name was too long for 'tar', as reported by 'guix lint'.

* gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch:
Rename to...
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
2019-04-19 17:46:40 +02:00
Ludovic Courtès 04b5ac212f
build: Show completion percentage while building.
* build-aux/compile-all.scm (%): New procedure.
(command-line): Use it to report completion.
2019-04-19 17:46:40 +02:00
Ludovic Courtès 35a09fd9c1
maint: Build all the 'guix' packages in parallel.
Until now, the 'guix' package shipped in binary tarballs and system
images would be built sequentially for each system type, one at a time.
Now all of them can potentially be built in parallel.

* Makefile.am (system_flags): New function.
(release): Run "guix build guix" before "make binary-tarballs" and
before "guix system disk-image" to build all the 'guix' packages in
parallel.
2019-04-19 17:46:40 +02:00
Ludovic Courtès 24963c1307
maint: 'release' clears gettext-induced changes in doc/.
* Makefile.am (release): Run "git checkout ." in doc/
2019-04-19 17:46:40 +02:00
Ludovic Courtès ea261dea0c
guix build: Accept multiple '-s' options.
* guix/scripts/build.scm (%default-options): Remove 'system'.
(%options) <--system>: Keep previous occurrences of 'system in RESULT.
(options->derivations)[system]: Remove.
[systems, things-to-build]: New variables.
[compute-derivation]: New procedure.
Iterate on all of SYSTEMS to compute the derivations of THINGS-TO-BUILD.
* tests/guix-build.sh: Add test for one and multiple '-s' flags.
* doc/guix.texi (Additional Build Options): Document this behavior.
2019-04-19 17:46:40 +02:00
Ricardo Wurmus 296da6e624
gnu: r-seurat: Update to 3.0.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
2019-04-19 15:38:47 +02:00
Ricardo Wurmus 9b86fea05f
gnu: Add r-sctransform.
* gnu/packages/cran.scm (r-sctransform): New variable.
2019-04-19 15:38:46 +02:00
Ricardo Wurmus 7015ae6881
gnu: r-urltools: Update to 1.7.3.
* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
2019-04-19 14:43:34 +02:00
Ricardo Wurmus f0826fec46
gnu: r-rdpack: Update to 0.11-0.
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
2019-04-19 14:43:29 +02:00
Ricardo Wurmus 5ac82ee33b
gnu: r-sdmtools: Update to 1.1-221.1.
* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
2019-04-19 14:43:23 +02:00
Ricardo Wurmus 3d60c80713
gnu: r-hardyweinberg: Update to 1.6.2.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
2019-04-19 14:43:17 +02:00
Ricardo Wurmus 8e79d820d0
gnu: r-clipr: Update to 0.6.0.
* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
2019-04-19 14:43:10 +02:00
Ricardo Wurmus 664a6bc1a6
gnu: r-caret: Update to 6.0-83.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
2019-04-19 14:42:51 +02:00
Ricardo Wurmus f00067dbfb
gnu: klick: Fix build with latest scons.
* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make
it compatible with the current version of scons.
2019-04-19 14:24:04 +02:00
Christopher Baines 35259437a7
gnu: perl-datetime-timezone: Fix missing timezone data.
I noticed this when using Sqitch, on systems without /usr/share/zoneinfo,
actions like deploy fail.

* gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata
phase to replace /usr/share/zoneinfo with a reference to the tzdata package.
[inputs]: Add the tzdata package.
2019-04-19 11:42:30 +01:00
Marius Bakke f32164abd3
gnu: python2-send2trash: Don't inherit properties from python-send2trash.
This is a follow-up to commit 20b3fde776.
Commits and beer do not mix well.

* gnu/packages/python-xyz.scm (python2-send2trash): Inherit using STRIP-PYTHON2-VARIANT.
2019-04-19 02:29:43 +02:00
Marius Bakke 20b3fde776
gnu: python-send2trash: Really delay Python2 variant.
This is a follow-up to commit 4782a06f45, which
somehow solved my problem, but did so incorrectly.

* gnu/packages/python-xyz.scm (python-send2trash)[properties]: Refer to
PYTHON2-SEND2TRASH.
2019-04-19 01:57:34 +02:00
Marius Bakke cbeb891344
gnu: gpgme: Update to 1.13.0.
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0.
[source](patches): Remove.
2019-04-19 01:48:07 +02:00
Marius Bakke 4782a06f45
gnu: python-send2trash: Properly delay python2 variant.
* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ...
(python-send2trash)[properties]: ... to here.
2019-04-19 01:48:07 +02:00
Marius Bakke c105e50903
gnu: python-service-identity: Update to 18.1.0.
* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
2019-04-19 01:48:07 +02:00
Marius Bakke 1adde06e4e
gnu: python-jsonschema: Update to 3.0.1.
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1.
[arguments]: Adjust check phase for Twisted instead of nosetests.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER.  Add
PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED.
[propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX.
(python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
2019-04-19 01:48:07 +02:00
Marius Bakke ea43f0d581
gnu: Add python-pyrsistent.
* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New
public variables.
2019-04-19 01:48:07 +02:00
Marius Bakke 52ca1c4abf
gnu: python-twisted: Update to 19.2.0.
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0.
[propagated-inputs]: Add PYTHON-PYHAMCREST.
2019-04-19 01:48:06 +02:00
Marius Bakke 919d80a0e0
gnu: python-automat: Update to 0.7.0.
* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
2019-04-19 01:48:06 +02:00
Marius Bakke bcfb8fac36
gnu: python-m2r: Update to 0.2.1.
* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
2019-04-19 01:48:06 +02:00
Marius Bakke e95c983706
gnu: python-idna: Update to 2.8.
* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
2019-04-19 01:48:06 +02:00
Marius Bakke 431a0d26c8
gnu: python-hyperlink: Update to 19.0.0.
* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
2019-04-19 01:48:06 +02:00
Marius Bakke 8142eadd40
gnu: python-zope-interface: Update to 4.6.0.
* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
2019-04-19 01:48:06 +02:00
Marius Bakke e6d782621a
gnu: xmlsec: Update to 1.2.28.
* gnu/packages/xml.scm (xmlsec): Update to 1.2.28.
2019-04-19 01:48:06 +02:00
Christopher Baines 3fdb9a375f
guile-build-system: Support building in parallel.
* guix/build/guile-build-system.scm (build): Use invoke-each, instead of
for-each, to use multiple cores if available.
(invoke-each, report-build-process): New procedures.
2019-04-18 23:13:48 +01:00
Ludovic Courtès 702c3c7dab
lint: 'check-github-url' uses our own 'open-connection-for-uri'.
Fixes <https://bugs.gnu.org/35053>.
Reported by Efraim Flashner <efraim@flashner.co.il>.

Previously 'check-github-url' would let Guile 2.2's (web client) module
take care of opening the connection.  Consequently, it wouldn't use the
TLS priority strings that we use in (guix build download),
'open-connection-for-uri'.  In particular, it would not disable TLSv1.3,
which would trigger <https://bugs.gnu.org/34102> for github.com.

* guix/scripts/lint.scm (check-github-url): Add #:timeout parameter.
[follow-redirect]: Change parameter name to 'url' and pass it to
'string->uri'.  Call 'guix:open-connection-for-uri' to open the
connection and pass it to 'http-head' via #:port.
2019-04-18 17:43:56 +02:00
Efraim Flashner bd5b6ce0d7
gnu: gnuastro: Update to 0.9.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.9.
[native-inputs]: Add libtool.
2019-04-18 17:00:46 +03:00
Efraim Flashner 5d450aba1f
gnu: nano: Update to 4.1.
* gnu/packages/nano.scm (nano): Update to 4.1.
2019-04-18 16:59:28 +03:00
Rutger Helling fd6d2fd871
gnu: xpra: Update to 2.5.1.
* gnu/packages/xorg.scm (xpra): Update to 2.5.1.
2019-04-18 09:25:38 +02:00
Tobias Geerinckx-Rice 2ad0310615
gnu: rclone: Update to 1.47.0.
* gnu/packages/sync.scm (rclone): Update to 1.47.0.
2019-04-17 16:25:57 +02:00
Tobias Geerinckx-Rice afcd4438f8
gnu: console-setup: Update to 1.191.
* gnu/packages/xorg.scm (console-setup): Update to 1.191.
2019-04-17 15:54:54 +02:00
Ludovic Courtès 9015e63996
installer: Sort keyboard layouts according to language and translations.
Previously, we would always (1) put English first, and (2) sort the
other layouts based on their English description.  This fixes both
issues.

* gnu/installer/newt/keymap.scm (sort-layouts)[layout<?]: New procedure.
[preferred]: New variable.
Partition according to both the 'name' and 'synopsis' fields.  Sort both
the main layouts and the other layouts according to 'layout<?'.
2019-04-17 15:16:08 +02:00
Ludovic Courtès 818595a974
installer: Parse the 'shortDescription' field from xkeyboard-config.
* gnu/installer/keymap.scm (<x11-keymap-layout>)[synopsis]: New field.
(xkb-rules->models+layouts): Fill out the 'synopsis' field.
2019-04-17 15:13:31 +02:00
Ludovic Courtès feaa83a377
installer: Translate keyboard layout names.
* gnu/installer.scm (installer-program)[installer-builder]: Call
'bindtextdomain' for "xkeyboard-config".
* gnu/installer/newt/keymap.scm (run-keymap-page): Add calls to
'gettext'.
2019-04-17 15:11:21 +02:00
Ludovic Courtès 085e021e63
nls: Update 'de' translation. 2019-04-17 14:31:46 +02:00
Ludovic Courtès c04052e4df
nls: Update 'de' translation of the manual. 2019-04-17 14:06:30 +02:00
Ludovic Courtès 72f749dcb8
pull: '--url', '--commit', and '--branch' apply to the 'guix' channel.
Suggested by pkill9 <pkill9@runbox.com>.

* guix/scripts/pull.scm (channel-list): Apply REF and URL to the 'guix'
channel.
* doc/guix.texi (Invoking guix pull): Adjust accordingly.
2019-04-17 13:56:40 +02:00
Ludovic Courtès 14755829dc
installer: Sort items with 'string-locale<?'.
That way "Österreich" comes before "Schweiz" in a German locale (or
pretty much any sane locale.)

* gnu/installer/newt/page.scm (run-listbox-selection-page)[sort-listbox-items]:
Use 'string-locale<?' instead of 'string<=?'.
2019-04-17 11:53:54 +02:00
Ludovic Courtès 7cb7be17af
installer: Look up timezone name translations in "iso_3166-1".
* gnu/installer/newt/timezone.scm (run-timezone-page): Add call to
'gettext' for timezone names.
2019-04-17 11:53:54 +02:00
Ludovic Courtès 7837a57241
installer: Display language and territory names natively.
* gnu/installer.scm (installer-program): Add calls to 'bindtextdomain'.
* gnu/installer/newt/locale.scm (run-locale-page) <language, territory>:
Add calls to 'gettext'.
2019-04-17 11:53:54 +02:00